Wall clock time and date at job start Tue Mar 31 2020 11:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47287 * 2 1 4 4 C 1.50699 * 109.46908 * 240.00013 * 2 1 3 5 5 H 1.08007 * 119.99938 * 239.99828 * 4 2 1 6 6 C 1.37875 * 120.00146 * 59.99941 * 4 2 1 7 7 N 1.31519 * 119.99768 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46819 * 60.00364 * 8 6 4 10 10 H 1.48506 * 109.47291 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47448 * 300.00457 * 8 6 4 12 12 C 1.53001 * 109.47086 * 120.00452 * 2 1 3 13 13 N 1.46506 * 109.47077 * 299.99660 * 12 2 1 14 14 C 1.34769 * 120.00088 * 180.27688 * 13 12 2 15 15 O 1.21575 * 120.00065 * 359.72749 * 14 13 12 16 16 C 1.47631 * 120.00172 * 179.72378 * 14 13 12 17 17 C 1.39468 * 120.63473 * 6.02273 * 16 14 13 18 18 N 1.31648 * 120.67342 * 180.02562 * 17 16 14 19 19 C 1.32045 * 122.16621 * 0.02562 * 18 17 16 20 20 C 1.38017 * 121.20750 * 359.97438 * 19 18 17 21 21 C 1.39588 * 119.16789 * 359.76595 * 20 19 18 22 22 C 1.48261 * 120.97160 * 180.25462 * 21 20 19 23 23 N 1.34112 * 126.68619 * 55.70128 * 22 21 20 24 24 N 1.28987 * 107.25885 * 179.88975 * 23 22 21 25 25 N 1.28724 * 108.96361 * 0.37874 * 24 23 22 26 26 H 0.97001 * 125.32404 * 179.77888 * 25 24 23 27 27 N 1.28869 * 109.34087 * 359.75548 * 25 24 23 28 28 H 1.08999 * 109.47143 * 299.99702 * 1 2 3 29 29 H 1.09003 * 109.47242 * 59.99440 * 1 2 3 30 30 H 1.09000 * 109.47797 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46864 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47317 * 300.00026 * 3 2 1 33 33 H 1.09000 * 109.47274 * 60.00280 * 3 2 1 34 34 H 0.97001 * 120.00101 * 179.97438 * 7 6 4 35 35 H 1.09008 * 109.47077 * 179.97438 * 12 2 1 36 36 H 1.08995 * 109.47771 * 59.99653 * 12 2 1 37 37 H 0.96999 * 119.99347 * 0.02562 * 13 12 2 38 38 H 1.08000 * 119.66404 * 0.03218 * 17 16 14 39 39 H 1.08001 * 119.39548 * 180.02562 * 19 18 17 40 40 H 1.08001 * 120.41419 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6991 -0.2394 -2.4827 7 7 0.9434 0.8302 -2.6033 8 14 2.3223 -1.1195 -4.0080 9 1 1.8277 -2.5198 -4.0082 10 1 1.8266 -0.4199 -5.2205 11 1 3.8073 -1.1191 -4.0078 12 6 2.0400 -0.7214 1.2492 13 7 1.5517 -0.0308 2.4455 14 6 1.8818 -0.4880 3.6695 15 8 2.5808 -1.4765 3.7810 16 6 1.3948 0.2115 4.8749 17 6 0.4926 1.2695 4.7668 18 7 0.0582 1.8941 5.8412 19 6 0.4486 1.5566 7.0567 20 6 1.3392 0.5220 7.2602 21 6 1.8296 -0.1803 6.1581 22 6 2.7834 -1.3020 6.3310 23 7 2.6048 -2.3967 7.0850 24 7 3.6634 -3.1233 6.9615 25 7 4.4902 -2.5278 6.1749 26 1 5.3637 -2.8641 5.9207 27 7 3.9754 -1.4151 5.7778 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3635 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.7094 1.1619 -3.4843 35 1 3.1300 -0.7218 1.2490 36 1 1.6766 -1.7490 1.2492 37 1 0.9937 0.7577 2.3564 38 1 0.1467 1.5796 3.7918 39 1 0.0632 2.0994 7.9071 40 1 1.6495 0.2565 8.2600 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589267365.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:01 Heat of formation + Delta-G solvation = 108.939848 kcal Electronic energy + Delta-G solvation = -26108.553324 eV Core-core repulsion = 22346.995565 eV Total energy + Delta-G solvation = -3761.557759 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.40543 -41.72695 -40.14512 -38.14248 -35.71960 -35.15306 -34.77737 -33.25849 -32.58959 -32.09268 -27.69798 -27.55985 -27.17608 -26.06627 -25.64809 -25.02029 -23.13695 -21.86737 -20.68152 -20.30604 -19.14411 -18.26221 -18.06744 -17.66854 -17.41787 -16.61099 -16.41814 -16.28491 -15.76766 -15.45956 -15.03326 -14.85419 -14.84110 -14.62395 -14.33390 -13.98325 -13.42028 -13.32962 -13.19876 -13.09783 -12.68668 -12.63900 -12.37592 -12.25378 -12.19069 -12.14356 -12.04958 -11.48991 -11.33794 -11.12848 -10.74603 -10.72540 -10.51563 -10.41165 -10.36073 -9.96800 -8.02281 -6.17951 -0.62102 -0.16952 0.18948 1.05284 1.43357 1.43448 1.45166 1.51168 1.80723 2.12327 2.46878 2.55210 2.68502 3.21472 3.25265 3.36263 3.65937 3.74377 3.83910 4.04864 4.26256 4.40375 4.48977 4.50177 4.57644 4.71382 4.72721 4.92279 4.98383 5.05489 5.10859 5.19441 5.31072 5.42616 5.53592 5.60043 5.67191 5.67689 6.15517 6.20886 6.42910 6.52801 6.74194 6.85387 7.13363 7.15316 7.49619 8.96380 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.017338 B = 0.003532 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.576875 B = 7924.934972 C = 9248.617561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.051 3.949 3 C -0.121 4.121 4 C -0.529 4.529 5 H 0.043 0.957 6 C 0.031 3.969 7 N -0.897 5.897 8 Si 0.943 3.057 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.277 1.277 12 C 0.153 3.847 13 N -0.700 5.700 14 C 0.550 3.450 15 O -0.567 6.567 16 C -0.171 4.171 17 C 0.144 3.856 18 N -0.486 5.486 19 C 0.139 3.861 20 C -0.132 4.132 21 C 0.069 3.931 22 C 0.204 3.796 23 N -0.282 5.282 24 N -0.062 5.062 25 N -0.203 5.203 26 H 0.490 0.510 27 N -0.260 5.260 28 H 0.038 0.962 29 H 0.064 0.936 30 H 0.017 0.983 31 H 0.018 0.982 32 H 0.063 0.937 33 H 0.038 0.962 34 H 0.261 0.739 35 H 0.041 0.959 36 H 0.038 0.962 37 H 0.408 0.592 38 H 0.179 0.821 39 H 0.214 0.786 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.522 2.447 20.387 20.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 C -0.179 4.179 4 C -0.568 4.568 5 H 0.062 0.938 6 C -0.170 4.170 7 N -0.535 5.535 8 Si 0.770 3.230 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.203 1.203 12 C 0.029 3.971 13 N -0.351 5.351 14 C 0.337 3.663 15 O -0.447 6.447 16 C -0.178 4.178 17 C -0.014 4.014 18 N -0.194 5.194 19 C -0.017 4.017 20 C -0.153 4.153 21 C 0.058 3.942 22 C -0.078 4.078 23 N -0.155 5.155 24 N -0.057 5.057 25 N -0.053 5.053 26 H 0.348 0.652 27 N -0.112 5.112 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.246 0.754 38 H 0.196 0.804 39 H 0.231 0.769 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.548 1.968 20.413 20.566 hybrid contribution 1.255 -1.026 -1.766 2.397 sum 2.802 0.942 18.647 18.880 Atomic orbital electron populations 1.21684 0.97012 0.98684 1.00566 1.18368 0.93330 0.93115 0.90164 1.21673 0.97947 0.97718 1.00519 1.21209 1.31853 1.12192 0.91553 0.93847 1.25415 0.95126 0.95570 1.00841 1.69891 1.36830 1.23136 1.23683 0.85858 0.78618 0.78794 0.79759 1.20413 1.20795 1.20292 1.21287 0.97125 0.94942 0.83720 1.46005 1.52247 1.31884 1.04972 1.18303 0.80229 0.84050 0.83734 1.90728 1.39392 1.27643 1.86982 1.20959 1.03110 1.00922 0.92778 1.23180 0.90257 0.88708 0.99265 1.67786 1.24037 1.28098 0.99495 1.23686 0.90415 0.92179 0.95456 1.22493 0.97787 0.95754 0.99260 1.17735 0.92425 0.90581 0.93506 1.23287 0.92307 0.96314 0.95848 1.76044 1.15949 1.02776 1.20775 1.78728 0.96510 1.20607 1.09841 1.47710 1.18478 1.10847 1.28273 0.65187 1.75068 1.11566 1.05679 1.18883 0.94278 0.91765 0.96400 0.96310 0.91791 0.94335 0.92989 0.94035 0.94326 0.75368 0.80430 0.76948 0.80773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.27 8.08 71.98 0.58 -4.69 16 2 C 0.05 2.30 0.50 -52.93 -0.03 2.27 16 3 C -0.12 -5.22 8.08 71.98 0.58 -4.64 16 4 C -0.53 -27.59 8.01 25.60 0.21 -27.39 16 5 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 6 C 0.03 1.59 5.15 84.65 0.44 2.02 16 7 N -0.90 -47.10 9.35 21.45 0.20 -46.90 16 8 Si 0.94 42.17 29.54 68.60 2.03 44.19 16 9 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 12 C 0.15 6.35 4.50 86.38 0.39 6.74 16 13 N -0.70 -23.68 4.91 -466.17 -2.29 -25.97 16 14 C 0.55 18.84 7.74 86.72 0.67 19.52 16 15 O -0.57 -22.94 13.17 -3.95 -0.05 -22.99 16 16 C -0.17 -4.63 5.91 -19.82 -0.12 -4.74 16 17 C 0.14 3.17 10.70 85.02 0.91 4.08 16 18 N -0.49 -9.40 10.33 -195.01 -2.01 -11.42 16 19 C 0.14 1.90 11.16 84.61 0.94 2.84 16 20 C -0.13 -2.15 9.87 22.54 0.22 -1.93 16 21 C 0.07 1.75 5.94 -19.60 -0.12 1.63 16 22 C 0.20 5.90 6.28 137.28 0.86 6.76 16 23 N -0.28 -8.20 12.54 -52.26 -0.66 -8.86 16 24 N -0.06 -1.62 13.47 37.02 0.50 -1.12 16 25 N -0.20 -4.62 7.90 37.02 0.29 -4.33 16 26 H 0.49 6.52 8.96 -347.53 -3.12 3.40 16 27 N -0.26 -7.53 10.42 -52.20 -0.54 -8.07 16 28 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 29 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 30 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 3.09 6.07 -2.39 -0.01 3.07 16 33 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 34 H 0.26 13.24 8.31 -92.71 -0.77 12.47 16 35 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.41 11.82 4.27 -92.71 -0.40 11.43 16 38 H 0.18 3.34 6.47 -2.91 -0.02 3.32 16 39 H 0.21 0.95 8.06 -2.91 -0.02 0.93 16 40 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -68.94 335.16 0.62 -68.32 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -2.39 Total: 14.66 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 5.54 Total: 2.47 kcal Atomic # 7 Polarization: -102.15 SS G_CDS: -4.51 Total: -106.67 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.05 Total: -22.99 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -68.94 0.62 -68.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589267365.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.265 kcal (2) G-P(sol) polarization free energy of solvation -68.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds