Wall clock time and date at job start Tue Mar 31 2020 11:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50700 * 109.47092 * 239.99574 * 2 1 3 5 5 H 1.08002 * 119.99770 * 239.99893 * 4 2 1 6 6 C 1.37876 * 119.99720 * 60.00211 * 4 2 1 7 7 N 1.31514 * 120.00513 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99651 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47265 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.46830 * 120.00397 * 8 6 4 11 11 H 1.48503 * 109.47108 * 240.00004 * 8 6 4 12 12 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 13 13 N 1.46499 * 109.47198 * 299.99984 * 12 2 1 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 2 15 15 O 1.21513 * 120.00315 * 359.72062 * 14 13 12 16 16 C 1.48174 * 119.99450 * 179.72357 * 14 13 12 17 17 C 1.39124 * 119.66729 * 179.72094 * 16 14 13 18 18 C 1.39679 * 118.91837 * 179.79504 * 17 16 14 19 19 C 1.48454 * 120.86412 * 180.22010 * 18 17 16 20 20 N 1.34053 * 126.67748 * 359.94696 * 19 18 17 21 21 N 1.28988 * 107.26659 * 179.86891 * 20 19 18 22 22 N 1.28729 * 108.94715 * 0.39602 * 21 20 19 23 23 H 0.97002 * 125.33986 * 179.76386 * 22 21 20 24 24 N 1.28874 * 109.31827 * 359.74814 * 22 21 20 25 25 C 1.39688 * 118.26959 * 0.47719 * 18 17 16 26 26 C 1.38335 * 119.21368 * 359.74100 * 25 18 17 27 27 N 1.31573 * 121.02495 * 0.03269 * 26 25 18 28 28 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 29 29 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 30 30 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 33 33 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 34 34 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 35 35 H 1.09009 * 109.46730 * 179.97438 * 12 2 1 36 36 H 1.08998 * 109.46846 * 60.00315 * 12 2 1 37 37 H 0.97001 * 119.99790 * 359.97438 * 13 12 2 38 38 H 1.08001 * 120.53522 * 0.02562 * 17 16 14 39 39 H 1.07992 * 120.39638 * 179.73073 * 25 18 17 40 40 H 1.08007 * 119.49042 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1198 -4.0079 9 1 3.1473 -2.2866 -3.6037 10 1 1.1678 -1.5868 -4.8164 11 1 3.1473 -0.1861 -4.8161 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8818 -0.4877 3.6695 15 8 2.5804 -1.4757 3.7811 16 6 1.3929 0.2145 4.8793 17 6 1.7331 -0.2667 6.1395 18 6 1.2673 0.4099 7.2693 19 6 1.6081 -0.0630 8.6346 20 7 2.3563 -1.1299 8.9489 21 7 2.4129 -1.1921 10.2361 22 7 1.7293 -0.2205 10.7319 23 1 1.6096 -0.0443 11.6782 24 7 1.2291 0.4814 9.7738 25 6 0.4679 1.5398 7.0809 26 6 0.1716 1.9503 5.7935 27 7 0.6300 1.2933 4.7498 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 0.7090 1.1613 -3.4845 35 1 3.1300 -0.7216 1.2491 36 1 1.6766 -1.7488 1.2493 37 1 0.9942 0.7584 2.3564 38 1 2.3504 -1.1469 6.2426 39 1 0.0856 2.0864 7.9302 40 1 -0.4464 2.8231 5.6427 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589267377.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:57 Heat of formation + Delta-G solvation = 122.744562 kcal Electronic energy + Delta-G solvation = -25097.078824 eV Core-core repulsion = 21336.119683 eV Total energy + Delta-G solvation = -3760.959141 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.90390 -40.66607 -38.77518 -36.32428 -35.12190 -34.38504 -33.27326 -31.87167 -31.70344 -30.65766 -26.21670 -25.65638 -25.57680 -25.22777 -24.94622 -23.40517 -22.73951 -20.48299 -19.64590 -18.79644 -17.91893 -17.58277 -16.94466 -16.14297 -15.78996 -15.25199 -15.09833 -14.96929 -14.56235 -14.53810 -14.07734 -13.88416 -13.39599 -12.87393 -12.74539 -12.69101 -12.25292 -12.12312 -11.94220 -11.67169 -11.54405 -11.33260 -11.15269 -10.84023 -10.62867 -10.33463 -10.24030 -10.10777 -9.75643 -9.63710 -9.57927 -9.44283 -9.23520 -8.72947 -8.42483 -8.27841 -5.97898 -4.07850 0.15708 0.57993 0.78441 1.77435 1.91960 2.93239 3.09544 3.30290 3.38722 3.42470 3.48627 3.75227 3.83691 4.15690 4.43837 4.57929 4.68118 4.73798 4.81747 5.00312 5.24734 5.28833 5.49325 5.56805 5.78005 5.91884 6.21796 6.28816 6.35701 6.57129 6.79769 6.92054 6.98627 7.05378 7.07934 7.40215 7.51649 7.61750 7.69439 7.74177 8.06510 8.08891 8.19684 8.42408 8.63844 8.92962 9.57751 11.03485 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.035331 B = 0.002411 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.317900 B =11612.361235 C =12213.589581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 C -0.132 4.132 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.128 3.872 13 N -0.690 5.690 14 C 0.557 3.443 15 O -0.540 6.540 16 C 0.094 3.906 17 C -0.075 4.075 18 C 0.019 3.981 19 C 0.217 3.783 20 N -0.256 5.256 21 N -0.044 5.044 22 N -0.225 5.225 23 H 0.477 0.523 24 N -0.286 5.286 25 C -0.120 4.120 26 C 0.103 3.897 27 N -0.443 5.443 28 H 0.009 0.991 29 H 0.086 0.914 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.086 0.914 33 H 0.009 0.991 34 H 0.259 0.741 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.410 0.590 38 H 0.161 0.839 39 H 0.149 0.851 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.956 4.294 25.145 25.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 C -0.190 4.190 4 C -0.543 4.543 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.006 3.994 13 N -0.340 5.340 14 C 0.340 3.660 15 O -0.418 6.418 16 C -0.044 4.044 17 C -0.098 4.098 18 C 0.007 3.993 19 C -0.063 4.063 20 N -0.129 5.129 21 N -0.039 5.039 22 N -0.071 5.071 23 H 0.332 0.668 24 N -0.138 5.138 25 C -0.142 4.142 26 C -0.056 4.056 27 N -0.155 5.155 28 H 0.028 0.972 29 H 0.104 0.896 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.104 0.896 33 H 0.028 0.972 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.247 0.753 38 H 0.179 0.821 39 H 0.167 0.833 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -2.435 3.544 24.600 24.973 hybrid contribution -0.071 0.117 0.415 0.437 sum -2.507 3.661 25.014 25.405 Atomic orbital electron populations 1.21837 0.97665 0.99199 1.00283 1.18369 0.92914 0.92825 0.90394 1.21839 0.98552 0.98319 1.00287 1.21021 1.31352 1.12053 0.89840 0.92343 1.24882 0.94909 0.94939 0.98839 1.69819 1.36753 1.22755 1.23060 0.86523 0.78615 0.79747 0.83036 1.19762 1.21114 1.21108 1.21849 0.98384 0.95961 0.83208 1.46210 1.50963 1.31601 1.05251 1.17789 0.81203 0.84071 0.82984 1.90780 1.38606 1.25996 1.86439 1.21386 0.96099 0.93098 0.93840 1.22164 0.97281 1.00002 0.90338 1.17418 0.99221 0.96165 0.86456 1.23417 0.97458 0.92152 0.93291 1.76200 1.16932 1.17003 1.02738 1.78990 1.11902 1.09149 1.03907 1.47762 1.31086 1.16519 1.11782 0.66829 1.74902 1.21320 1.21373 0.96191 1.22366 0.96588 0.95320 0.99940 1.22815 0.97223 0.98795 0.86810 1.67607 1.07071 1.05565 1.35213 0.97212 0.89581 0.95459 0.95459 0.89578 0.97206 0.93095 0.92318 0.92314 0.75305 0.82092 0.83338 0.81112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.08 37.16 0.30 -2.73 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -3.04 8.08 37.16 0.30 -2.74 16 4 C -0.50 -13.25 8.01 -34.44 -0.28 -13.53 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.71 9.35 55.43 0.52 -23.20 16 8 Si 0.89 20.83 29.54 -169.99 -5.02 15.80 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 C 0.13 2.76 4.50 -4.04 -0.02 2.75 16 13 N -0.69 -13.03 4.95 -61.14 -0.30 -13.34 16 14 C 0.56 10.21 7.81 -12.18 -0.10 10.12 16 15 O -0.54 -11.32 16.32 5.35 0.09 -11.24 16 16 C 0.09 1.41 6.75 -83.06 -0.56 0.84 16 17 C -0.07 -0.99 9.32 -38.71 -0.36 -1.35 16 18 C 0.02 0.20 5.91 -104.61 -0.62 -0.42 16 19 C 0.22 2.31 7.97 -156.29 -1.25 1.06 16 20 N -0.26 -3.02 12.33 32.16 0.40 -2.62 16 21 N -0.04 -0.41 13.47 60.35 0.81 0.40 16 22 N -0.23 -1.34 7.90 60.35 0.48 -0.87 16 23 H 0.48 0.40 8.96 -340.36 -3.05 -2.65 16 24 N -0.29 -2.36 12.17 32.17 0.39 -1.97 16 25 C -0.12 -1.03 9.80 -39.00 -0.38 -1.41 16 26 C 0.10 0.97 11.17 -17.63 -0.20 0.77 16 27 N -0.44 -5.86 9.53 -9.88 -0.09 -5.95 16 28 H 0.01 0.19 6.86 -51.93 -0.36 -0.17 16 29 H 0.09 2.17 6.07 -51.93 -0.32 1.85 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 2.17 6.07 -51.93 -0.32 1.86 16 33 H 0.01 0.19 6.86 -51.93 -0.36 -0.17 16 34 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 35 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.41 7.36 5.49 -40.82 -0.22 7.14 16 38 H 0.16 2.23 7.56 -52.49 -0.40 1.84 16 39 H 0.15 0.88 7.96 -52.49 -0.42 0.46 16 40 H 0.17 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 342.42 15.07 5.16 5.16 Total: -1.00 -31.66 342.42 -7.98 -39.65 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -7.09 Total: 1.94 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -3.32 Total: -3.77 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 2.20 Total: -47.54 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.24 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.66 -7.98 -39.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589267377.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.391 kcal (2) G-P(sol) polarization free energy of solvation -31.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds