Wall clock time and date at job start Tue Mar 31 2020 11:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50700 * 109.47092 * 239.99574 * 2 1 3 5 5 H 1.08002 * 119.99770 * 239.99893 * 4 2 1 6 6 C 1.37876 * 119.99720 * 60.00211 * 4 2 1 7 7 N 1.31514 * 120.00513 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99651 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47265 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.46830 * 120.00397 * 8 6 4 11 11 H 1.48503 * 109.47108 * 240.00004 * 8 6 4 12 12 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 13 13 N 1.46499 * 109.47198 * 299.99984 * 12 2 1 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 2 15 15 O 1.21513 * 120.00315 * 359.72062 * 14 13 12 16 16 C 1.48174 * 119.99450 * 179.72357 * 14 13 12 17 17 C 1.39124 * 119.66729 * 179.72094 * 16 14 13 18 18 C 1.39679 * 118.91837 * 179.79504 * 17 16 14 19 19 C 1.48454 * 120.86412 * 180.22010 * 18 17 16 20 20 N 1.34053 * 126.67748 * 359.94696 * 19 18 17 21 21 N 1.28988 * 107.26659 * 179.86891 * 20 19 18 22 22 N 1.28729 * 108.94715 * 0.39602 * 21 20 19 23 23 H 0.97002 * 125.33986 * 179.76386 * 22 21 20 24 24 N 1.28874 * 109.31827 * 359.74814 * 22 21 20 25 25 C 1.39688 * 118.26959 * 0.47719 * 18 17 16 26 26 C 1.38335 * 119.21368 * 359.74100 * 25 18 17 27 27 N 1.31573 * 121.02495 * 0.03269 * 26 25 18 28 28 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 29 29 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 30 30 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 33 33 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 34 34 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 35 35 H 1.09009 * 109.46730 * 179.97438 * 12 2 1 36 36 H 1.08998 * 109.46846 * 60.00315 * 12 2 1 37 37 H 0.97001 * 119.99790 * 359.97438 * 13 12 2 38 38 H 1.08001 * 120.53522 * 0.02562 * 17 16 14 39 39 H 1.07992 * 120.39638 * 179.73073 * 25 18 17 40 40 H 1.08007 * 119.49042 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1198 -4.0079 9 1 3.1473 -2.2866 -3.6037 10 1 1.1678 -1.5868 -4.8164 11 1 3.1473 -0.1861 -4.8161 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8818 -0.4877 3.6695 15 8 2.5804 -1.4757 3.7811 16 6 1.3929 0.2145 4.8793 17 6 1.7331 -0.2667 6.1395 18 6 1.2673 0.4099 7.2693 19 6 1.6081 -0.0630 8.6346 20 7 2.3563 -1.1299 8.9489 21 7 2.4129 -1.1921 10.2361 22 7 1.7293 -0.2205 10.7319 23 1 1.6096 -0.0443 11.6782 24 7 1.2291 0.4814 9.7738 25 6 0.4679 1.5398 7.0809 26 6 0.1716 1.9503 5.7935 27 7 0.6300 1.2933 4.7498 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 0.7090 1.1613 -3.4845 35 1 3.1300 -0.7216 1.2491 36 1 1.6766 -1.7488 1.2493 37 1 0.9942 0.7584 2.3564 38 1 2.3504 -1.1469 6.2426 39 1 0.0856 2.0864 7.9302 40 1 -0.4464 2.8231 5.6427 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589267377.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:56 Heat of formation + Delta-G solvation = 100.145783 kcal Electronic energy + Delta-G solvation = -25098.058781 eV Core-core repulsion = 21336.119683 eV Total energy + Delta-G solvation = -3761.939098 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.59434 -41.71412 -40.14993 -38.10352 -35.90198 -35.20077 -34.91012 -33.00759 -32.63965 -32.22925 -27.68756 -27.53715 -27.14728 -26.42205 -25.85532 -24.53598 -23.59644 -21.72265 -20.59837 -20.42264 -19.13517 -18.26204 -17.99237 -17.67394 -17.02870 -16.62952 -16.48760 -16.42193 -16.06760 -15.35959 -15.09858 -14.91452 -14.84026 -14.72272 -14.30368 -13.98233 -13.48183 -13.18215 -13.11227 -13.04318 -12.71463 -12.66478 -12.55131 -12.39890 -12.28314 -12.23222 -12.11631 -11.46757 -11.46386 -11.19143 -10.71201 -10.64544 -10.56704 -10.40372 -10.35643 -9.92775 -7.99458 -6.15151 -0.66725 -0.32766 0.06650 1.10116 1.29682 1.43576 1.47504 1.57166 1.75129 2.09896 2.43274 2.50215 2.78703 2.97683 3.12914 3.23963 3.76392 3.80937 3.87275 3.94981 4.27332 4.33806 4.44092 4.52187 4.67952 4.69367 4.74830 4.94905 5.00356 5.09349 5.14839 5.22262 5.35725 5.43583 5.53910 5.57197 5.69556 5.70270 6.16314 6.23492 6.45539 6.46209 6.76964 6.88806 6.99101 7.18312 7.52266 8.99885 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.035331 B = 0.002411 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.317900 B =11612.361235 C =12213.589581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.051 3.949 3 C -0.121 4.121 4 C -0.526 4.526 5 H 0.046 0.954 6 C 0.027 3.973 7 N -0.899 5.899 8 Si 0.947 3.053 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.143 3.857 13 N -0.688 5.688 14 C 0.556 3.444 15 O -0.576 6.576 16 C 0.072 3.928 17 C -0.082 4.082 18 C 0.016 3.984 19 C 0.203 3.797 20 N -0.293 5.293 21 N -0.053 5.053 22 N -0.192 5.192 23 H 0.498 0.502 24 N -0.271 5.271 25 C -0.090 4.090 26 C 0.111 3.889 27 N -0.461 5.461 28 H 0.034 0.966 29 H 0.064 0.936 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.064 0.936 33 H 0.034 0.966 34 H 0.260 0.740 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.415 0.585 38 H 0.143 0.857 39 H 0.187 0.813 40 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.233 6.119 27.528 28.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 C -0.179 4.179 4 C -0.564 4.564 5 H 0.064 0.936 6 C -0.173 4.173 7 N -0.538 5.538 8 Si 0.774 3.226 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.207 1.207 12 C 0.020 3.980 13 N -0.339 5.339 14 C 0.342 3.658 15 O -0.456 6.456 16 C -0.065 4.065 17 C -0.105 4.105 18 C 0.005 3.995 19 C -0.077 4.077 20 N -0.166 5.166 21 N -0.048 5.048 22 N -0.044 5.044 23 H 0.358 0.642 24 N -0.124 5.124 25 C -0.112 4.112 26 C -0.049 4.049 27 N -0.174 5.174 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.254 0.746 38 H 0.161 0.839 39 H 0.204 0.796 40 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -3.710 5.366 27.009 27.785 hybrid contribution 0.267 -0.366 -0.102 0.464 sum -3.443 5.000 26.907 27.584 Atomic orbital electron populations 1.21675 0.97131 0.98714 1.00371 1.18366 0.93290 0.93054 0.90227 1.21678 0.97962 0.97886 1.00375 1.21281 1.31620 1.12130 0.91405 0.93552 1.25468 0.95183 0.95624 1.00997 1.69920 1.37052 1.23298 1.23529 0.85683 0.78089 0.78699 0.80175 1.19991 1.20756 1.20750 1.21433 0.97411 0.95321 0.83857 1.46014 1.51340 1.31705 1.04798 1.18315 0.80200 0.83604 0.83729 1.90746 1.40121 1.27656 1.87095 1.20703 0.98736 0.94699 0.92337 1.21977 0.97726 0.99984 0.90804 1.17501 0.99386 0.96666 0.85938 1.23380 0.98172 0.92447 0.93734 1.76194 1.18272 1.18241 1.03854 1.78941 1.12585 1.09978 1.03276 1.47850 1.28954 1.14949 1.12652 0.64202 1.74853 1.20808 1.20999 0.95738 1.22785 0.93908 0.93563 1.00931 1.23556 0.96274 0.98972 0.86136 1.67548 1.07343 1.05317 1.37152 0.94722 0.91706 0.96189 0.96194 0.91703 0.94717 0.93028 0.93701 0.93691 0.74624 0.83896 0.79598 0.76932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.57 8.08 71.98 0.58 -4.99 16 2 C 0.05 2.44 0.50 -52.93 -0.03 2.42 16 3 C -0.12 -5.58 8.08 71.98 0.58 -5.00 16 4 C -0.53 -28.21 8.01 25.60 0.21 -28.01 16 5 H 0.05 2.53 7.74 -2.91 -0.02 2.51 16 6 C 0.03 1.44 5.15 84.65 0.44 1.87 16 7 N -0.90 -48.47 9.35 21.45 0.20 -48.27 16 8 Si 0.95 43.10 29.54 68.60 2.03 45.13 16 9 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 C 0.14 6.36 4.50 86.38 0.39 6.75 16 13 N -0.69 -26.29 4.95 -465.64 -2.30 -28.60 16 14 C 0.56 20.98 7.81 86.88 0.68 21.66 16 15 O -0.58 -25.34 16.32 -3.76 -0.06 -25.40 16 16 C 0.07 2.13 6.75 41.86 0.28 2.41 16 17 C -0.08 -2.17 9.32 22.83 0.21 -1.96 16 18 C 0.02 0.32 5.91 -19.86 -0.12 0.21 16 19 C 0.20 3.95 7.97 137.37 1.09 5.04 16 20 N -0.29 -6.75 12.33 -52.18 -0.64 -7.39 16 21 N -0.05 -0.91 13.47 37.02 0.50 -0.41 16 22 N -0.19 -1.78 7.90 37.02 0.29 -1.48 16 23 H 0.50 -0.76 8.96 -347.53 -3.12 -3.88 16 24 N -0.27 -3.63 12.17 -52.13 -0.63 -4.26 16 25 C -0.09 -1.18 9.80 22.64 0.22 -0.96 16 26 C 0.11 1.65 11.17 84.75 0.95 2.60 16 27 N -0.46 -11.32 9.53 -185.16 -1.76 -13.08 16 28 H 0.03 1.37 6.86 -2.39 -0.02 1.36 16 29 H 0.06 3.28 6.07 -2.38 -0.01 3.26 16 30 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 3.28 6.07 -2.38 -0.01 3.26 16 33 H 0.03 1.37 6.86 -2.39 -0.02 1.36 16 34 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 35 H 0.04 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.42 14.68 5.49 -92.71 -0.51 14.18 16 38 H 0.14 4.24 7.56 -2.91 -0.02 4.22 16 39 H 0.19 1.10 7.96 -2.91 -0.02 1.08 16 40 H 0.21 1.33 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -70.73 342.42 0.59 -70.13 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -2.50 Total: 11.61 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 5.49 Total: 2.03 kcal Atomic # 7 Polarization: -99.14 SS G_CDS: -4.35 Total: -103.49 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.06 Total: -25.40 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -70.73 0.59 -70.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589267377.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.279 kcal (2) G-P(sol) polarization free energy of solvation -70.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds