Wall clock time and date at job start Tue Mar 31 2020 11:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86800 * 119.99811 * 333.95909 * 7 5 3 10 10 H 1.48494 * 109.47013 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.46850 * 299.99560 * 9 7 5 12 12 H 1.48501 * 109.47288 * 59.99489 * 9 7 5 13 13 N 1.46500 * 109.47386 * 294.27869 * 3 2 1 14 14 C 1.34781 * 119.99868 * 84.99941 * 13 3 2 15 15 O 1.21286 * 119.99663 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00075 * 179.97438 * 14 13 3 17 17 C 1.50700 * 109.47297 * 179.97438 * 16 14 13 18 18 C 1.38777 * 120.32180 * 269.72442 * 17 16 14 19 19 C 1.38415 * 118.50617 * 179.78269 * 18 17 16 20 20 C 1.39289 * 119.07070 * 0.48762 * 19 18 17 21 21 C 1.48432 * 119.72541 * 179.72732 * 20 19 18 22 22 N 1.34057 * 126.67167 * 0.05192 * 21 20 19 23 23 N 1.28985 * 107.26373 * 179.97438 * 22 21 20 24 24 N 1.28727 * 108.95261 * 359.97438 * 23 22 21 25 25 H 0.96992 * 125.34586 * 179.97438 * 24 23 22 26 26 N 1.28881 * 109.31756 * 359.77229 * 24 23 22 27 27 N 1.32627 * 120.55012 * 359.74993 * 20 19 18 28 28 C 1.31754 * 121.62568 * 359.97438 * 27 20 19 29 29 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 30 30 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 31 31 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 33 33 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 34 34 H 0.96996 * 120.00478 * 354.97061 * 8 7 5 35 35 H 0.96998 * 120.00123 * 264.99724 * 13 3 2 36 36 H 1.08999 * 109.47016 * 300.00283 * 16 14 13 37 37 H 1.09004 * 109.46538 * 59.99909 * 16 14 13 38 38 H 1.07996 * 120.74188 * 359.97438 * 18 17 16 39 39 H 1.07997 * 120.46546 * 180.24076 * 19 18 17 40 40 H 1.07995 * 119.55858 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1763 1.0612 2.9141 10 1 4.0190 0.5167 4.0089 11 1 2.8198 2.4705 3.2175 12 1 1.9371 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3910 15 8 -0.3344 2.6299 -0.4675 16 6 0.0681 3.3275 -2.6859 17 6 -1.3313 3.8752 -2.5735 18 6 -2.4204 3.0938 -2.9329 19 6 -3.6894 3.6329 -2.8104 20 6 -3.8282 4.9376 -2.3428 21 6 -5.1818 5.5323 -2.2114 22 7 -6.3485 4.9389 -2.5010 23 7 -7.2840 5.7905 -2.2491 24 7 -6.7520 6.8805 -1.8178 25 1 -7.2391 7.6780 -1.5578 26 7 -5.4709 6.7444 -1.7815 27 7 -2.7609 5.6531 -2.0143 28 6 -1.5423 5.1627 -2.1161 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 5.8117 0.4042 0.4384 35 1 2.2955 2.1150 -1.9977 36 1 0.7620 4.1422 -2.8932 37 1 0.1092 2.6000 -3.4965 38 1 -2.2812 2.0867 -3.2971 39 1 -4.5595 3.0515 -3.0773 40 1 -0.6967 5.7751 -1.8398 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590419146.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:24 Heat of formation + Delta-G solvation = 116.224800 kcal Electronic energy + Delta-G solvation = -25213.925987 eV Core-core repulsion = 21452.684128 eV Total energy + Delta-G solvation = -3761.241859 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.71833 -40.51021 -39.06496 -35.45199 -34.75191 -34.13963 -32.95301 -32.49943 -32.00114 -31.32197 -28.47376 -26.97648 -25.17154 -24.41933 -23.32433 -22.45857 -21.98847 -20.48953 -19.56317 -19.53981 -17.86211 -17.41305 -17.28333 -16.66121 -16.33727 -15.75983 -15.05883 -14.75757 -14.39100 -14.14564 -13.96446 -13.61172 -13.27204 -13.15860 -12.90616 -12.66490 -12.57560 -12.41589 -12.10335 -11.75325 -11.65268 -11.48492 -11.40030 -11.18692 -10.83552 -10.72967 -10.45631 -9.96445 -9.88196 -9.81860 -9.68919 -9.34232 -9.19844 -8.83679 -8.28021 -8.12636 -6.63823 -4.23195 0.39832 0.90345 1.15583 1.95686 2.03929 3.17297 3.18345 3.39419 3.44871 3.59010 3.62662 3.81846 4.06996 4.42038 4.50853 4.60991 4.77452 4.87263 4.88833 5.05198 5.07395 5.26278 5.35642 5.40042 5.56890 5.64483 5.87661 6.04656 6.07184 6.08611 6.10841 6.25732 6.46123 6.66811 6.77487 6.94088 7.02235 7.33813 7.38397 7.65013 7.68121 7.89786 8.21725 8.43668 8.67509 8.94004 9.41545 10.73956 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.025484 B = 0.002616 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.475667 B =10700.285015 C =10888.097460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.251 3.749 4 H 0.040 0.960 5 C -0.630 4.630 6 H 0.063 0.937 7 C 0.049 3.951 8 N -0.886 5.886 9 Si 1.029 2.971 10 H -0.283 1.283 11 H -0.281 1.281 12 H -0.274 1.274 13 N -0.701 5.701 14 C 0.502 3.498 15 O -0.543 6.543 16 C -0.107 4.107 17 C -0.084 4.084 18 C -0.063 4.063 19 C -0.121 4.121 20 C 0.184 3.816 21 C 0.227 3.773 22 N -0.262 5.262 23 N -0.052 5.052 24 N -0.230 5.230 25 H 0.476 0.524 26 N -0.263 5.263 27 N -0.451 5.451 28 C 0.119 3.881 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.029 0.971 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.271 0.729 35 H 0.393 0.607 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.627 9.275 -11.163 23.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.148 3.852 4 H 0.058 0.942 5 C -0.667 4.667 6 H 0.081 0.919 7 C -0.159 4.159 8 N -0.517 5.517 9 Si 0.856 3.144 10 H -0.209 1.209 11 H -0.207 1.207 12 H -0.199 1.199 13 N -0.349 5.349 14 C 0.286 3.714 15 O -0.422 6.422 16 C -0.148 4.148 17 C -0.087 4.087 18 C -0.089 4.089 19 C -0.143 4.143 20 C 0.045 3.955 21 C -0.054 4.054 22 N -0.136 5.136 23 N -0.047 5.047 24 N -0.076 5.076 25 H 0.330 0.670 26 N -0.115 5.115 27 N -0.160 5.160 28 C -0.040 4.040 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.226 0.774 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -19.796 9.805 -8.581 23.699 hybrid contribution 0.550 -0.030 -2.063 2.135 sum -19.246 9.776 -10.644 24.068 Atomic orbital electron populations 1.21885 0.97412 0.98806 1.01921 1.22229 0.93646 0.99772 1.01362 1.19005 0.95735 0.88440 0.82060 0.94214 1.21974 0.89734 1.50134 1.04843 0.91926 1.25595 0.96591 0.91663 1.02080 1.70871 1.13904 1.36359 1.30573 0.84233 0.76046 0.77659 0.76498 1.20866 1.20666 1.19946 1.46267 1.14406 1.55982 1.18213 1.20207 0.82857 0.79538 0.88794 1.90709 1.50621 1.59588 1.41271 1.20735 0.93634 1.02077 0.98350 1.20554 0.95580 0.95104 0.97477 1.21413 0.91166 0.99790 0.96534 1.21914 0.98937 0.94564 0.98899 1.17644 0.86907 0.90726 1.00192 1.23210 0.94202 0.87655 1.00340 1.76070 0.96098 1.22771 1.18665 1.78903 1.22484 0.91302 1.11978 1.47845 1.03360 1.14925 1.41468 0.66966 1.75173 0.95845 1.20306 1.20134 1.67426 0.98387 1.36880 1.13342 1.22561 0.93575 0.93185 0.94714 0.93082 0.93299 0.95166 0.93195 0.91929 0.91858 0.77417 0.87625 0.87852 0.83966 0.83554 0.81988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.53 37.16 0.32 -2.48 16 2 C -0.13 -2.84 5.37 -26.73 -0.14 -2.98 16 3 C 0.25 5.72 1.84 -69.08 -0.13 5.59 16 4 H 0.04 1.00 6.12 -51.93 -0.32 0.69 16 5 C -0.63 -16.38 8.92 -34.44 -0.31 -16.69 16 6 H 0.06 1.69 7.96 -52.49 -0.42 1.28 16 7 C 0.05 1.35 5.15 -17.82 -0.09 1.26 16 8 N -0.89 -25.64 13.70 55.43 0.76 -24.88 16 9 Si 1.03 24.68 26.56 -169.99 -4.51 20.17 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.27 -6.25 6.34 56.52 0.36 -5.89 16 13 N -0.70 -12.81 5.03 -54.93 -0.28 -13.08 16 14 C 0.50 8.36 6.43 -10.99 -0.07 8.29 16 15 O -0.54 -11.08 13.17 5.55 0.07 -11.01 16 16 C -0.11 -1.19 5.85 -29.04 -0.17 -1.36 16 17 C -0.08 -1.01 4.39 -104.42 -0.46 -1.47 16 18 C -0.06 -0.71 9.84 -39.32 -0.39 -1.09 16 19 C -0.12 -1.40 9.74 -39.13 -0.38 -1.78 16 20 C 0.18 2.47 6.76 -82.93 -0.56 1.91 16 21 C 0.23 2.93 8.03 -156.30 -1.26 1.67 16 22 N -0.26 -3.22 12.21 32.15 0.39 -2.83 16 23 N -0.05 -0.53 13.47 60.35 0.81 0.29 16 24 N -0.23 -1.83 7.90 60.35 0.48 -1.36 16 25 H 0.48 1.35 8.96 -340.37 -3.05 -1.70 16 26 N -0.26 -3.05 12.38 32.17 0.40 -2.65 16 27 N -0.45 -6.41 10.29 -9.77 -0.10 -6.51 16 28 C 0.12 1.52 10.85 -17.58 -0.19 1.33 16 29 H 0.05 1.07 7.89 -51.93 -0.41 0.66 16 30 H 0.05 0.92 5.63 -51.93 -0.29 0.63 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.44 5.77 -51.93 -0.30 1.14 16 34 H 0.27 7.74 8.73 -40.82 -0.36 7.38 16 35 H 0.39 6.25 8.53 -40.82 -0.35 5.90 16 36 H 0.11 0.94 8.09 -51.93 -0.42 0.52 16 37 H 0.10 0.88 8.09 -51.93 -0.42 0.46 16 38 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.15 1.42 7.88 -52.49 -0.41 1.01 16 40 H 0.16 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 343.02 15.07 5.17 5.17 Total: -1.00 -34.20 343.02 -7.91 -42.11 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -7.28 Total: 2.39 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -3.83 Total: -7.80 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: 2.46 Total: -51.02 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.07 Total: -11.01 kcal Atomic # 14 Polarization: 24.68 SS G_CDS: -4.51 Total: 20.17 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.20 -7.91 -42.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590419146.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.333 kcal (2) G-P(sol) polarization free energy of solvation -34.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds