Wall clock time and date at job start Tue Mar 31 2020 11:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86800 * 119.99811 * 333.95909 * 7 5 3 10 10 H 1.48494 * 109.47013 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.46850 * 299.99560 * 9 7 5 12 12 H 1.48501 * 109.47288 * 59.99489 * 9 7 5 13 13 N 1.46500 * 109.47386 * 294.27869 * 3 2 1 14 14 C 1.34781 * 119.99868 * 84.99941 * 13 3 2 15 15 O 1.21286 * 119.99663 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00075 * 179.97438 * 14 13 3 17 17 C 1.50700 * 109.47297 * 179.97438 * 16 14 13 18 18 C 1.38777 * 120.32180 * 269.72442 * 17 16 14 19 19 C 1.38415 * 118.50617 * 179.78269 * 18 17 16 20 20 C 1.39289 * 119.07070 * 0.48762 * 19 18 17 21 21 C 1.48432 * 119.72541 * 179.72732 * 20 19 18 22 22 N 1.34057 * 126.67167 * 0.05192 * 21 20 19 23 23 N 1.28985 * 107.26373 * 179.97438 * 22 21 20 24 24 N 1.28727 * 108.95261 * 359.97438 * 23 22 21 25 25 H 0.96992 * 125.34586 * 179.97438 * 24 23 22 26 26 N 1.28881 * 109.31756 * 359.77229 * 24 23 22 27 27 N 1.32627 * 120.55012 * 359.74993 * 20 19 18 28 28 C 1.31754 * 121.62568 * 359.97438 * 27 20 19 29 29 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 30 30 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 31 31 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 33 33 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 34 34 H 0.96996 * 120.00478 * 354.97061 * 8 7 5 35 35 H 0.96998 * 120.00123 * 264.99724 * 13 3 2 36 36 H 1.08999 * 109.47016 * 300.00283 * 16 14 13 37 37 H 1.09004 * 109.46538 * 59.99909 * 16 14 13 38 38 H 1.07996 * 120.74188 * 359.97438 * 18 17 16 39 39 H 1.07997 * 120.46546 * 180.24076 * 19 18 17 40 40 H 1.07995 * 119.55858 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1763 1.0612 2.9141 10 1 4.0190 0.5167 4.0089 11 1 2.8198 2.4705 3.2175 12 1 1.9371 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3910 15 8 -0.3344 2.6299 -0.4675 16 6 0.0681 3.3275 -2.6859 17 6 -1.3313 3.8752 -2.5735 18 6 -2.4204 3.0938 -2.9329 19 6 -3.6894 3.6329 -2.8104 20 6 -3.8282 4.9376 -2.3428 21 6 -5.1818 5.5323 -2.2114 22 7 -6.3485 4.9389 -2.5010 23 7 -7.2840 5.7905 -2.2491 24 7 -6.7520 6.8805 -1.8178 25 1 -7.2391 7.6780 -1.5578 26 7 -5.4709 6.7444 -1.7815 27 7 -2.7609 5.6531 -2.0143 28 6 -1.5423 5.1627 -2.1161 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 5.8117 0.4042 0.4384 35 1 2.2955 2.1150 -1.9977 36 1 0.7620 4.1422 -2.8932 37 1 0.1092 2.6000 -3.4965 38 1 -2.2812 2.0867 -3.2971 39 1 -4.5595 3.0515 -3.0773 40 1 -0.6967 5.7751 -1.8398 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590419146.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:23 Heat of formation + Delta-G solvation = 90.161831 kcal Electronic energy + Delta-G solvation = -25215.056162 eV Core-core repulsion = 21452.684128 eV Total energy + Delta-G solvation = -3762.372034 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.54246 -41.48670 -40.40251 -37.06594 -35.64135 -35.06652 -34.43292 -33.87673 -33.20116 -32.58824 -29.70424 -28.53375 -26.02392 -25.38301 -24.33536 -24.10650 -23.02048 -21.95063 -21.09877 -20.34376 -19.75026 -18.23470 -18.15710 -17.75471 -17.56891 -17.18196 -16.30996 -16.02207 -15.53405 -15.26994 -15.11436 -14.88262 -14.52312 -14.49370 -14.32509 -14.11179 -14.04991 -13.61774 -13.47195 -12.98987 -12.63463 -12.56442 -12.48560 -12.45692 -12.26912 -12.25159 -12.04006 -11.75995 -11.53515 -11.19463 -10.90532 -10.64900 -10.58990 -10.37877 -9.79330 -9.70395 -8.77404 -6.36672 -0.49787 0.08745 0.28185 1.12509 1.33675 1.47317 1.49264 1.69648 1.89431 2.34066 2.43440 2.53831 2.91466 2.96245 2.96923 3.61003 3.74366 3.93920 3.99937 4.06614 4.12084 4.23953 4.36261 4.43812 4.45022 4.59335 4.61250 4.74884 4.80617 4.92409 5.03219 5.14276 5.23642 5.28234 5.35178 5.54358 5.59732 5.60989 5.76807 5.77399 6.07343 6.60207 6.77796 6.97380 7.05141 7.31486 7.57870 8.59077 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.025484 B = 0.002616 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.475667 B =10700.285015 C =10888.097460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.128 4.128 3 C 0.255 3.745 4 H 0.017 0.983 5 C -0.623 4.623 6 H 0.045 0.955 7 C 0.007 3.993 8 N -0.918 5.918 9 Si 1.060 2.940 10 H -0.283 1.283 11 H -0.276 1.276 12 H -0.258 1.258 13 N -0.703 5.703 14 C 0.501 3.499 15 O -0.581 6.581 16 C -0.092 4.092 17 C -0.092 4.092 18 C -0.061 4.061 19 C -0.122 4.122 20 C 0.167 3.833 21 C 0.212 3.788 22 N -0.278 5.278 23 N -0.051 5.051 24 N -0.200 5.200 25 H 0.495 0.505 26 N -0.278 5.278 27 N -0.477 5.477 28 C 0.106 3.894 29 H 0.032 0.968 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.044 0.956 34 H 0.263 0.737 35 H 0.405 0.595 36 H 0.133 0.867 37 H 0.139 0.861 38 H 0.169 0.831 39 H 0.162 0.838 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.277 9.337 -12.385 25.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.167 4.167 3 C 0.150 3.850 4 H 0.035 0.965 5 C -0.660 4.660 6 H 0.064 0.936 7 C -0.196 4.196 8 N -0.552 5.552 9 Si 0.883 3.117 10 H -0.209 1.209 11 H -0.201 1.201 12 H -0.183 1.183 13 N -0.352 5.352 14 C 0.289 3.711 15 O -0.462 6.462 16 C -0.132 4.132 17 C -0.095 4.095 18 C -0.087 4.087 19 C -0.144 4.144 20 C 0.028 3.972 21 C -0.069 4.069 22 N -0.152 5.152 23 N -0.046 5.046 24 N -0.051 5.051 25 H 0.355 0.645 26 N -0.131 5.131 27 N -0.187 5.187 28 C -0.053 4.053 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.240 0.760 36 H 0.151 0.849 37 H 0.157 0.843 38 H 0.186 0.814 39 H 0.179 0.821 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -21.475 9.894 -9.839 25.610 hybrid contribution 0.997 0.054 -1.732 2.000 sum -20.478 9.948 -11.571 25.538 Atomic orbital electron populations 1.21754 0.95512 1.00122 1.01470 1.22113 0.95238 0.98543 1.00794 1.18643 0.93254 0.89420 0.83660 0.96513 1.22177 0.91646 1.48348 1.03850 0.93647 1.26549 0.96718 0.91520 1.04843 1.70955 1.15102 1.38997 1.30102 0.83800 0.75784 0.78138 0.73956 1.20889 1.20141 1.18254 1.46078 1.15720 1.56370 1.17044 1.21062 0.81425 0.78379 0.90242 1.90702 1.51504 1.60731 1.43222 1.20712 0.93496 1.03270 0.95735 1.20671 0.96270 0.94911 0.97642 1.21773 0.90631 1.00703 0.95561 1.22125 0.99875 0.94025 0.98327 1.17920 0.86981 0.91583 1.00677 1.23295 0.94405 0.88114 1.01078 1.76048 0.96106 1.23506 1.19527 1.78832 1.22096 0.91643 1.11984 1.47868 1.02513 1.15146 1.39611 0.64515 1.75119 0.97194 1.20212 1.20527 1.67396 0.99057 1.37825 1.14417 1.22856 0.93580 0.94056 0.94805 0.94848 0.92412 0.92906 0.92547 0.93746 0.92815 0.75973 0.84922 0.84273 0.81354 0.82077 0.80975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.86 8.53 71.98 0.61 -4.24 16 2 C -0.13 -5.35 5.37 30.60 0.16 -5.19 16 3 C 0.26 11.41 1.84 44.25 0.08 11.50 16 4 H 0.02 0.85 6.12 -2.39 -0.01 0.83 16 5 C -0.62 -32.41 8.92 25.60 0.23 -32.19 16 6 H 0.05 2.47 7.96 -2.91 -0.02 2.45 16 7 C 0.01 0.37 5.15 84.66 0.44 0.81 16 8 N -0.92 -53.96 13.70 21.45 0.29 -53.66 16 9 Si 1.06 49.97 26.56 68.60 1.82 51.79 16 10 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.26 -11.40 6.34 99.48 0.63 -10.77 16 13 N -0.70 -24.33 5.03 -446.09 -2.24 -26.57 16 14 C 0.50 15.46 6.43 87.65 0.56 16.03 16 15 O -0.58 -22.73 13.17 -3.05 -0.04 -22.77 16 16 C -0.09 -1.71 5.85 29.10 0.17 -1.54 16 17 C -0.09 -1.97 4.39 -19.73 -0.09 -2.05 16 18 C -0.06 -1.19 9.84 22.44 0.22 -0.97 16 19 C -0.12 -2.60 9.74 22.57 0.22 -2.38 16 20 C 0.17 4.34 6.76 42.00 0.28 4.62 16 21 C 0.21 5.33 8.03 137.36 1.10 6.43 16 22 N -0.28 -6.58 12.21 -52.19 -0.64 -7.22 16 23 N -0.05 -0.97 13.47 37.02 0.50 -0.47 16 24 N -0.20 -2.92 7.90 37.02 0.29 -2.63 16 25 H 0.50 1.95 8.96 -347.54 -3.12 -1.16 16 26 N -0.28 -6.22 12.38 -52.14 -0.65 -6.86 16 27 N -0.48 -13.25 10.29 -184.83 -1.90 -15.15 16 28 C 0.11 2.57 10.85 84.71 0.92 3.49 16 29 H 0.03 1.33 7.89 -2.39 -0.02 1.32 16 30 H 0.06 2.01 5.63 -2.39 -0.01 2.00 16 31 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.04 2.00 5.77 -2.39 -0.01 1.98 16 34 H 0.26 15.34 8.73 -92.71 -0.81 14.53 16 35 H 0.41 11.99 8.53 -92.71 -0.79 11.19 16 36 H 0.13 1.81 8.09 -2.39 -0.02 1.79 16 37 H 0.14 1.66 8.09 -2.38 -0.02 1.64 16 38 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 39 H 0.16 2.85 7.88 -2.91 -0.02 2.83 16 40 H 0.17 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -74.85 343.02 -0.54 -75.39 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -2.90 Total: 13.85 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: 4.92 Total: -5.69 kcal Atomic # 7 Polarization: -108.23 SS G_CDS: -4.34 Total: -112.57 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.04 Total: -22.77 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 1.82 Total: 51.79 kcal Total: -74.85 -0.54 -75.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590419146.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.554 kcal (2) G-P(sol) polarization free energy of solvation -74.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds