Wall clock time and date at job start Tue Mar 31 2020 11:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47297 * 2 1 4 4 H 1.08995 * 109.47260 * 54.99027 * 3 2 1 5 5 C 1.50703 * 109.47409 * 174.99796 * 3 2 1 6 6 H 1.07996 * 120.00156 * 119.99138 * 5 3 2 7 7 C 1.37882 * 119.99491 * 299.99739 * 5 3 2 8 8 N 1.31517 * 119.99462 * 179.97438 * 7 5 3 9 9 Si 1.86793 * 120.00228 * 359.97438 * 7 5 3 10 10 H 1.48507 * 109.47051 * 90.00316 * 9 7 5 11 11 H 1.48497 * 109.47319 * 210.00121 * 9 7 5 12 12 H 1.48499 * 109.47427 * 330.00312 * 9 7 5 13 13 N 1.46504 * 109.46813 * 294.99441 * 3 2 1 14 14 C 1.34777 * 119.99786 * 84.99855 * 13 3 2 15 15 O 1.21533 * 120.00254 * 0.02562 * 14 13 3 16 16 C 1.48045 * 119.99859 * 179.97438 * 14 13 3 17 17 N 1.32821 * 119.59498 * 353.93077 * 16 14 13 18 18 C 1.31324 * 121.76211 * 179.70677 * 17 16 14 19 19 C 1.39714 * 120.73164 * 0.56928 * 18 17 16 20 20 C 1.48352 * 120.43529 * 179.70489 * 19 18 17 21 21 N 1.34092 * 126.68095 * 179.70803 * 20 19 18 22 22 N 1.28984 * 107.26295 * 179.88903 * 21 20 19 23 23 N 1.28726 * 108.95808 * 0.37487 * 22 21 20 24 24 H 0.97004 * 125.33664 * 179.75970 * 23 22 21 25 25 N 1.28869 * 109.33347 * 359.75972 * 23 22 21 26 26 C 1.39691 * 119.12422 * 359.72117 * 19 18 17 27 27 C 1.38348 * 118.39142 * 0.02562 * 26 19 18 28 28 C 1.50690 * 120.41369 * 180.02562 * 27 26 19 29 29 H 1.08993 * 109.47063 * 300.00400 * 1 2 3 30 30 H 1.09005 * 109.46798 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46338 * 60.00669 * 1 2 3 32 32 H 1.09010 * 109.46618 * 119.99433 * 2 1 3 33 33 H 1.08994 * 109.47473 * 239.99258 * 2 1 3 34 34 H 0.96996 * 119.99534 * 179.97438 * 8 7 5 35 35 H 0.96996 * 120.00131 * 264.99839 * 13 3 2 36 36 H 1.07998 * 119.63528 * 180.29114 * 18 17 16 37 37 H 1.08007 * 120.80769 * 179.97438 * 26 19 18 38 38 H 1.09004 * 109.47491 * 263.21493 * 28 27 26 39 39 H 1.09007 * 109.47280 * 23.21143 * 28 27 26 40 40 H 1.09000 * 109.47986 * 143.21245 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5420 1.4443 0.1239 6 1 4.1473 1.8887 -0.6523 7 6 4.1433 0.8784 1.2282 8 7 5.4540 0.8796 1.3360 9 14 3.0962 0.1102 2.5708 10 1 2.8744 -1.3259 2.2648 11 1 3.7939 0.2362 3.8757 12 1 1.7880 0.8095 2.6395 13 7 1.6526 2.0974 -1.2519 14 6 0.4353 2.6642 -1.3672 15 8 -0.3408 2.6325 -0.4324 16 6 0.0439 3.3265 -2.6321 17 7 0.9383 3.4644 -3.6043 18 6 0.6357 4.0398 -4.7454 19 6 -0.6479 4.5422 -4.9734 20 6 -0.9807 5.1967 -6.2625 21 7 -2.1660 5.7150 -6.6151 22 7 -2.0372 6.1881 -7.8082 23 7 -0.8329 5.9804 -8.2126 24 1 -0.4797 6.2377 -9.0787 25 7 -0.1700 5.3771 -7.2868 26 6 -1.6136 4.4203 -3.9715 27 6 -1.2570 3.8033 -2.7857 28 6 -2.2628 3.6470 -1.6745 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 -0.8901 32 1 1.8933 -0.5138 0.8901 33 1 1.8934 -0.5139 -0.8898 34 1 5.8770 0.4818 2.1130 35 1 2.2721 2.1230 -1.9978 36 1 1.3887 4.1295 -5.5144 37 1 -2.6142 4.7994 -4.1186 38 1 -2.1376 4.4558 -0.9545 39 1 -3.2705 3.6823 -2.0889 40 1 -2.1082 2.6899 -1.1763 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590419956.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:51 Heat of formation + Delta-G solvation = 104.281517 kcal Electronic energy + Delta-G solvation = -25648.710844 eV Core-core repulsion = 21886.951085 eV Total energy + Delta-G solvation = -3761.759759 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.53449 -41.89757 -40.19157 -37.22125 -35.73325 -34.96016 -34.83028 -34.22463 -33.24069 -32.13442 -29.58215 -28.38784 -26.66723 -25.78098 -24.63203 -24.21231 -23.03927 -22.22559 -21.32025 -20.26954 -19.67078 -18.21333 -18.20940 -17.95044 -17.24442 -17.15913 -16.60885 -16.29736 -15.58356 -15.34934 -15.13780 -14.88037 -14.65061 -14.29229 -14.05189 -13.77748 -13.71950 -13.64696 -13.56292 -13.31846 -13.10339 -12.89016 -12.73220 -12.53868 -12.37378 -12.28305 -12.25438 -11.82212 -11.34368 -11.23256 -11.01992 -10.83688 -10.65698 -10.40900 -10.02073 -9.67748 -8.35540 -6.41700 -0.88397 0.06445 0.11309 0.97528 1.30255 1.34971 1.37876 1.48070 1.86144 2.27010 2.28992 2.48824 2.75310 2.98556 3.00149 3.16056 3.68210 3.78278 3.80356 3.90229 4.17006 4.26961 4.35501 4.39076 4.47869 4.50415 4.67615 4.85067 4.86803 4.92591 5.04245 5.11202 5.15375 5.24469 5.26965 5.41643 5.50754 5.56745 5.57709 5.71069 6.14162 6.55036 6.60729 6.90059 7.03832 7.19070 7.37662 8.80031 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.026104 B = 0.002956 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.370713 B = 9470.108141 C =10232.724397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.138 4.138 3 C 0.249 3.751 4 H 0.032 0.968 5 C -0.535 4.535 6 H 0.051 0.949 7 C 0.028 3.972 8 N -0.936 5.936 9 Si 0.940 3.060 10 H -0.259 1.259 11 H -0.294 1.294 12 H -0.253 1.253 13 N -0.682 5.682 14 C 0.554 3.446 15 O -0.549 6.549 16 C 0.076 3.924 17 N -0.468 5.468 18 C 0.132 3.868 19 C -0.044 4.044 20 C 0.211 3.789 21 N -0.284 5.284 22 N -0.051 5.051 23 N -0.195 5.195 24 H 0.497 0.503 25 N -0.284 5.284 26 C -0.034 4.034 27 C -0.073 4.073 28 C -0.113 4.113 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.270 0.730 35 H 0.408 0.592 36 H 0.189 0.811 37 H 0.176 0.824 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.282 8.442 -18.958 26.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.177 4.177 3 C 0.145 3.855 4 H 0.049 0.951 5 C -0.574 4.574 6 H 0.069 0.931 7 C -0.172 4.172 8 N -0.575 5.575 9 Si 0.766 3.234 10 H -0.185 1.185 11 H -0.222 1.222 12 H -0.177 1.177 13 N -0.330 5.330 14 C 0.339 3.661 15 O -0.428 6.428 16 C -0.061 4.061 17 N -0.178 5.178 18 C -0.031 4.031 19 C -0.050 4.050 20 C -0.069 4.069 21 N -0.156 5.156 22 N -0.046 5.046 23 N -0.047 5.047 24 H 0.356 0.644 25 N -0.137 5.137 26 C -0.061 4.061 27 C -0.076 4.076 28 C -0.169 4.169 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.243 0.757 36 H 0.206 0.794 37 H 0.193 0.807 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.201 8.333 -18.448 25.927 hybrid contribution 0.465 -0.052 -0.015 0.469 sum -15.736 8.281 -18.463 25.633 Atomic orbital electron populations 1.21773 0.94765 1.00776 1.01813 1.22212 0.96274 0.98170 1.00997 1.18888 0.93263 0.89870 0.83490 0.95069 1.21287 0.90460 1.38671 1.06936 0.93124 1.25599 0.95823 0.95809 0.99940 1.69993 1.10448 1.46171 1.30865 0.85986 0.79487 0.79953 0.77953 1.18494 1.22168 1.17734 1.45970 1.15275 1.54544 1.17239 1.18137 0.82303 0.78871 0.86743 1.90701 1.51118 1.61131 1.39875 1.21200 0.91721 0.99448 0.93764 1.67645 1.35222 1.13975 1.00959 1.23158 0.94467 0.91722 0.93744 1.18481 0.96014 1.00782 0.89730 1.23265 0.87201 1.01377 0.95067 1.76099 1.21625 1.13308 1.04587 1.78885 1.02846 1.16341 1.06545 1.47818 1.05671 1.34592 1.16582 0.64387 1.74945 1.24403 1.15609 0.98744 1.21732 1.00709 0.93957 0.89746 1.20975 0.94436 0.95186 0.97044 1.21038 0.96193 1.04611 0.95082 0.93602 0.92222 0.92877 0.93517 0.91767 0.92090 0.75654 0.79389 0.80668 0.90473 0.89090 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.99 8.51 71.98 0.61 -4.38 16 2 C -0.14 -5.95 5.11 30.59 0.16 -5.79 16 3 C 0.25 11.88 1.83 44.24 0.08 11.96 16 4 H 0.03 1.62 6.63 -2.39 -0.02 1.61 16 5 C -0.54 -29.88 9.31 25.60 0.24 -29.64 16 6 H 0.05 3.06 7.98 -2.91 -0.02 3.04 16 7 C 0.03 1.58 5.45 84.66 0.46 2.05 16 8 N -0.94 -56.98 13.96 21.45 0.30 -56.68 16 9 Si 0.94 44.66 24.41 68.60 1.67 46.33 16 10 H -0.26 -11.58 6.83 99.48 0.68 -10.90 16 11 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 12 H -0.25 -11.69 6.53 99.48 0.65 -11.04 16 13 N -0.68 -28.39 5.01 -448.78 -2.25 -30.64 16 14 C 0.55 20.94 6.31 86.85 0.55 21.49 16 15 O -0.55 -21.95 10.42 -3.82 -0.04 -21.99 16 16 C 0.08 2.36 6.75 41.88 0.28 2.64 16 17 N -0.47 -13.64 9.53 -184.10 -1.75 -15.40 16 18 C 0.13 2.99 10.87 85.13 0.92 3.91 16 19 C -0.04 -0.91 5.90 -19.88 -0.12 -1.03 16 20 C 0.21 3.95 7.95 137.32 1.09 5.04 16 21 N -0.28 -5.44 12.30 -52.21 -0.64 -6.09 16 22 N -0.05 -0.78 13.47 37.02 0.50 -0.28 16 23 N -0.20 -1.86 7.90 37.02 0.29 -1.57 16 24 H 0.50 -0.27 8.96 -347.53 -3.12 -3.38 16 25 N -0.28 -4.28 12.10 -52.16 -0.63 -4.91 16 26 C -0.03 -0.68 9.48 22.65 0.21 -0.46 16 27 C -0.07 -1.83 5.92 -19.56 -0.12 -1.94 16 28 C -0.11 -2.59 8.72 71.23 0.62 -1.97 16 29 H 0.04 1.78 7.84 -2.39 -0.02 1.76 16 30 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.05 1.94 5.65 -2.39 -0.01 1.93 16 32 H 0.05 2.09 3.22 -2.38 -0.01 2.08 16 33 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 35 H 0.41 16.43 7.87 -92.71 -0.73 15.70 16 36 H 0.19 3.36 7.89 -2.91 -0.02 3.34 16 37 H 0.18 2.65 7.96 -2.91 -0.02 2.63 16 38 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.09 1.47 8.05 -2.38 -0.02 1.45 16 40 H 0.08 2.34 5.84 -2.39 -0.01 2.33 16 Total: -1.00 -70.66 332.31 -0.35 -71.00 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -2.80 Total: 18.33 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 5.00 Total: 1.87 kcal Atomic # 7 Polarization: -111.37 SS G_CDS: -4.19 Total: -115.56 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.04 Total: -21.99 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.67 Total: 46.33 kcal Total: -70.66 -0.35 -71.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590419956.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.286 kcal (2) G-P(sol) polarization free energy of solvation -70.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds