Wall clock time and date at job start Tue Mar 31 2020 11:39:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53002 * 109.46837 * 2 1
4 4 N 1.46492 * 109.46993 * 180.02562 * 3 2 1
5 5 C 1.39371 * 120.00284 * 180.02562 * 4 3 2
6 6 C 1.38926 * 120.00466 * 0.02562 * 5 4 3
7 7 C 1.37878 * 120.11971 * 179.97438 * 6 5 4
8 8 C 1.39636 * 120.14580 * 359.97438 * 7 6 5
9 9 C 1.48365 * 119.99388 * 179.97438 * 8 7 6
10 10 N 1.34088 * 126.68445 * 179.68487 * 9 8 7
11 11 N 1.28985 * 107.26592 * 179.88791 * 10 9 8
12 12 N 1.28725 * 108.95618 * 0.38003 * 11 10 9
13 13 H 0.97001 * 125.33301 * 179.75181 * 12 11 10
14 14 N 1.28873 * 109.33231 * 359.75849 * 12 11 10
15 15 C 1.39174 * 120.01587 * 359.97438 * 8 7 6
16 16 C 1.38668 * 119.87780 * 359.74548 * 15 8 7
17 17 N 1.39396 * 120.07368 * 180.24790 * 16 15 8
18 18 C 1.34774 * 120.00212 * 325.21709 * 17 16 15
19 19 O 1.21811 * 119.99589 * 4.52502 * 18 17 16
20 20 C 1.41589 * 120.00310 * 184.52729 * 18 17 16
21 21 H 1.08005 * 120.00286 * 359.97438 * 20 18 17
22 22 C 1.40142 * 120.00284 * 180.02562 * 20 18 17
23 23 N 1.30623 * 119.99583 * 359.97438 * 22 20 18
24 24 Si 1.86795 * 120.00224 * 179.97438 * 22 20 18
25 25 H 1.48505 * 109.46971 * 359.97438 * 24 22 20
26 26 H 1.48495 * 109.47203 * 119.99704 * 24 22 20
27 27 H 1.48506 * 109.47159 * 239.99808 * 24 22 20
28 28 H 1.09003 * 109.46856 * 180.02562 * 1 2 3
29 29 H 1.09007 * 109.47220 * 299.99369 * 1 2 3
30 30 H 1.08997 * 109.47766 * 59.99495 * 1 2 3
31 31 H 1.08999 * 109.46910 * 240.00632 * 2 1 3
32 32 H 1.08997 * 109.47308 * 120.00231 * 2 1 3
33 33 H 1.08997 * 109.47354 * 300.00757 * 3 2 1
34 34 H 1.09007 * 109.46700 * 60.00313 * 3 2 1
35 35 H 0.96998 * 120.00152 * 0.02562 * 4 3 2
36 36 H 1.07995 * 119.93761 * 359.95345 * 6 5 4
37 37 H 1.08003 * 119.92726 * 179.97438 * 7 6 5
38 38 H 1.08001 * 120.06307 * 180.02562 * 15 8 7
39 39 H 0.97003 * 120.00288 * 145.20966 * 17 16 15
40 40 H 0.97003 * 120.00254 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 7 3.5049 1.4426 -0.0006
5 6 4.2017 2.6496 -0.0002
6 6 3.5072 3.8528 0.0014
7 6 4.1943 5.0482 0.0023
8 6 5.5906 5.0545 0.0023
9 6 6.3265 6.3428 0.0027
10 7 7.6575 6.5051 0.0087
11 7 7.8885 7.7741 0.0044
12 7 6.7656 8.4035 0.0041
13 1 6.6632 9.3681 0.0047
14 7 5.7988 7.5513 0.0032
15 6 6.2923 3.8526 0.0018
16 6 5.6021 2.6498 0.0067
17 7 6.3008 1.4436 0.0115
18 6 7.4680 1.3383 -0.6541
19 8 7.9537 2.3181 -1.1905
20 6 8.1296 0.0887 -0.7297
21 1 7.6991 -0.7800 -0.2537
22 6 9.3436 -0.0207 -1.4213
23 7 9.8644 1.0300 -1.9966
24 14 10.2167 -1.6691 -1.5205
25 1 9.4258 -2.6928 -0.7913
26 1 10.3554 -2.0709 -2.9433
27 1 11.5634 -1.5537 -0.9051
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3634 0.5138 0.8901
30 1 -0.3634 0.5139 -0.8899
31 1 1.8933 -0.5137 -0.8900
32 1 1.8934 -0.5138 0.8899
33 1 1.6765 1.9564 -0.8899
34 1 1.6766 1.9563 0.8901
35 1 3.9899 0.6026 -0.0013
36 1 2.4273 3.8517 0.0015
37 1 3.6512 5.9818 0.0031
38 1 7.3723 3.8566 0.0022
39 1 5.9470 0.6800 0.4939
40 1 10.7045 0.9543 -2.4756
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001590640276.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:39:20
Heat of formation + Delta-G solvation = 111.368036 kcal
Electronic energy + Delta-G solvation = -25493.999563 eV
Core-core repulsion = 21732.547099 eV
Total energy + Delta-G solvation = -3761.452464 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.139 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-44.01615 -39.54594 -37.24337 -36.27327 -34.16210 -33.70955 -33.04080 -32.25100
-32.16519 -29.41187 -28.56820 -26.40795 -25.72192 -24.27140 -23.25379 -22.58995
-21.35575 -20.69649 -19.59273 -18.85545 -17.68061 -16.73438 -16.71859 -16.11305
-15.73170 -15.57308 -15.37502 -14.32415 -14.11701 -13.92159 -13.67417 -13.30068
-13.19199 -12.87113 -12.59793 -12.55229 -12.24659 -12.07027 -11.88006 -11.55259
-11.28216 -11.21819 -11.18018 -11.09633 -10.94547 -10.86985 -10.66126 -10.61267
-10.48245 -10.26746 -9.34630 -9.23245 -8.79179 -7.71541 -7.46051 -6.53666
-6.29235 -4.83036 1.26207 1.70084 2.10395 2.57461 2.91302 3.07953
3.16255 3.20275 3.62754 4.02223 4.19670 4.36426 4.57934 4.63385
4.74010 4.80396 4.84015 5.09200 5.40740 5.44916 5.49246 5.54292
5.65284 5.77631 5.79475 5.81279 5.89644 5.99260 6.00096 6.06983
6.17764 6.55371 6.65120 6.77186 6.81794 7.11153 7.28808 7.42241
7.59966 7.85816 7.96443 8.10781 8.31041 8.58018 8.87149 9.36464
10.46120 10.68175
Molecular weight = 316.14amu
Principal moments of inertia in cm(-1)
A = 0.006814 B = 0.005489 C = 0.003080
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 4107.932110 B = 5099.720568 C = 9089.697418
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.138 4.138
3 C 0.128 3.872
4 N -0.747 5.747
5 C 0.189 3.811
6 C -0.189 4.189
7 C -0.071 4.071
8 C -0.070 4.070
9 C 0.245 3.755
10 N -0.259 5.259
11 N -0.060 5.060
12 N -0.241 5.241
13 H 0.469 0.531
14 N -0.314 5.314
15 C -0.043 4.043
16 C 0.118 3.882
17 N -0.700 5.700
18 C 0.545 3.455
19 O -0.561 6.561
20 C -0.540 4.540
21 H 0.068 0.932
22 C 0.089 3.911
23 N -0.744 5.744
24 Si 0.910 3.090
25 H -0.263 1.263
26 H -0.275 1.275
27 H -0.274 1.274
28 H 0.057 0.943
29 H 0.056 0.944
30 H 0.056 0.944
31 H 0.069 0.931
32 H 0.068 0.932
33 H 0.056 0.944
34 H 0.057 0.943
35 H 0.399 0.601
36 H 0.120 0.880
37 H 0.121 0.879
38 H 0.159 0.841
39 H 0.385 0.615
40 H 0.272 0.728
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.023 4.534 4.943 16.452
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.175 4.175
3 C 0.004 3.996
4 N -0.378 5.378
5 C 0.083 3.917
6 C -0.213 4.213
7 C -0.093 4.093
8 C -0.076 4.076
9 C -0.033 4.033
10 N -0.132 5.132
11 N -0.056 5.056
12 N -0.085 5.085
13 H 0.322 0.678
14 N -0.166 5.166
15 C -0.067 4.067
16 C 0.017 3.983
17 N -0.346 5.346
18 C 0.354 3.646
19 O -0.443 6.443
20 C -0.575 4.575
21 H 0.086 0.914
22 C -0.134 4.134
23 N -0.372 5.372
24 Si 0.734 3.266
25 H -0.187 1.187
26 H -0.201 1.201
27 H -0.200 1.200
28 H 0.076 0.924
29 H 0.075 0.925
30 H 0.075 0.925
31 H 0.088 0.912
32 H 0.087 0.913
33 H 0.074 0.926
34 H 0.075 0.925
35 H 0.234 0.766
36 H 0.138 0.862
37 H 0.139 0.861
38 H 0.176 0.824
39 H 0.218 0.782
40 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -14.093 5.656 4.410 15.813
hybrid contribution -0.054 -1.140 0.053 1.143
sum -14.147 4.516 4.463 15.506
Atomic orbital electron populations
1.21671 0.94878 1.01955 1.02054 1.21715 0.96497 0.96416 1.02916
1.21294 0.80589 0.96845 1.00891 1.44402 1.04800 1.05545 1.83084
1.17920 0.89825 0.86620 0.97335 1.20145 0.98770 0.90276 1.12090
1.20623 0.92032 0.97450 0.99176 1.16924 0.91593 0.86571 1.12511
1.23786 0.87941 0.92368 0.99237 1.76273 1.14358 1.05284 1.17280
1.78900 1.10850 1.00696 1.15149 1.47656 1.01520 1.12009 1.47365
0.67827 1.74887 1.17674 0.99805 1.24196 1.21335 1.02232 0.88486
0.94625 1.17295 0.87901 0.88308 1.04762 1.43877 1.25518 1.09911
1.55250 1.17009 0.78466 0.90656 0.78511 1.90679 1.64770 1.39319
1.49580 1.19989 1.06766 0.95079 1.35707 0.91381 1.25733 0.96781
0.97494 0.93408 1.70022 1.15478 1.29264 1.22395 0.86282 0.79521
0.82225 0.78569 1.18682 1.20053 1.19965 0.92400 0.92520 0.92473
0.91242 0.91346 0.92555 0.92521 0.76618 0.86170 0.86080 0.82377
0.78196 0.91740
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16
2 C -0.14 -1.19 6.05 -26.73 -0.16 -1.35 16
3 C 0.13 1.35 4.90 -4.05 -0.02 1.33 16
4 N -0.75 -10.33 5.69 -58.41 -0.33 -10.66 16
5 C 0.19 3.21 6.68 -83.50 -0.56 2.65 16
6 C -0.19 -2.89 9.29 -39.46 -0.37 -3.26 16
7 C -0.07 -1.14 9.69 -39.19 -0.38 -1.52 16
8 C -0.07 -1.35 5.88 -104.86 -0.62 -1.97 16
9 C 0.25 4.64 7.93 -156.26 -1.24 3.40 16
10 N -0.26 -5.26 12.22 32.15 0.39 -4.87 16
11 N -0.06 -1.00 13.47 60.35 0.81 -0.19 16
12 N -0.24 -3.07 7.90 60.35 0.48 -2.60 16
13 H 0.47 3.29 8.96 -340.36 -3.05 0.24 16
14 N -0.31 -4.86 12.07 32.16 0.39 -4.47 16
15 C -0.04 -0.95 8.33 -39.08 -0.33 -1.27 16
16 C 0.12 2.46 6.32 -83.59 -0.53 1.93 16
17 N -0.70 -15.38 4.98 -12.35 -0.06 -15.44 16
18 C 0.54 14.97 7.41 -14.98 -0.11 14.86 16
19 O -0.56 -17.52 12.28 5.09 0.06 -17.46 16
20 C -0.54 -14.56 9.30 -37.59 -0.35 -14.91 16
21 H 0.07 1.66 7.85 -52.48 -0.41 1.25 16
22 C 0.09 2.39 5.50 -17.35 -0.10 2.29 16
23 N -0.74 -21.67 11.73 55.56 0.65 -21.02 16
24 Si 0.91 19.41 29.56 -169.99 -5.02 14.39 16
25 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16
26 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16
27 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16
28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16
29 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16
30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16
31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
33 H 0.06 0.60 7.94 -51.93 -0.41 0.18 16
34 H 0.06 0.56 7.94 -51.92 -0.41 0.15 16
35 H 0.40 5.45 7.08 -40.82 -0.29 5.16 16
36 H 0.12 1.49 6.71 -52.49 -0.35 1.14 16
37 H 0.12 1.69 7.87 -52.48 -0.41 1.28 16
38 H 0.16 4.14 6.01 -52.49 -0.32 3.82 16
39 H 0.39 7.19 7.67 -40.82 -0.31 6.88 16
40 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16
LS Contribution 345.43 15.07 5.21 5.21
Total: -1.00 -35.17 345.43 -9.03 -44.20
By element:
Atomic # 1 Polarization: 18.64 SS G_CDS: -7.22 Total: 11.42 kcal
Atomic # 6 Polarization: 5.88 SS G_CDS: -4.38 Total: 1.50 kcal
Atomic # 7 Polarization: -61.58 SS G_CDS: 2.33 Total: -59.25 kcal
Atomic # 8 Polarization: -17.52 SS G_CDS: 0.06 Total: -17.46 kcal
Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal
Total LS contribution 5.21 Total: 5.21 kcal
Total: -35.17 -9.03 -44.20 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001590640276.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 155.571 kcal
(2) G-P(sol) polarization free energy of solvation -35.174 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.397 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.203 kcal
(6) G-S(sol) free energy of system = (1) + (5) 111.368 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds