Wall clock time and date at job start Tue Mar 31 2020 11:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46837 * 2 1 4 4 N 1.46492 * 109.46993 * 180.02562 * 3 2 1 5 5 C 1.39371 * 120.00284 * 180.02562 * 4 3 2 6 6 C 1.38926 * 120.00466 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.11971 * 179.97438 * 6 5 4 8 8 C 1.39636 * 120.14580 * 359.97438 * 7 6 5 9 9 C 1.48365 * 119.99388 * 179.97438 * 8 7 6 10 10 N 1.34088 * 126.68445 * 179.68487 * 9 8 7 11 11 N 1.28985 * 107.26592 * 179.88791 * 10 9 8 12 12 N 1.28725 * 108.95618 * 0.38003 * 11 10 9 13 13 H 0.97001 * 125.33301 * 179.75181 * 12 11 10 14 14 N 1.28873 * 109.33231 * 359.75849 * 12 11 10 15 15 C 1.39174 * 120.01587 * 359.97438 * 8 7 6 16 16 C 1.38668 * 119.87780 * 359.74548 * 15 8 7 17 17 N 1.39396 * 120.07368 * 180.24790 * 16 15 8 18 18 C 1.34774 * 120.00212 * 325.21709 * 17 16 15 19 19 O 1.21811 * 119.99589 * 4.52502 * 18 17 16 20 20 C 1.41589 * 120.00310 * 184.52729 * 18 17 16 21 21 H 1.08005 * 120.00286 * 359.97438 * 20 18 17 22 22 C 1.40142 * 120.00284 * 180.02562 * 20 18 17 23 23 N 1.30623 * 119.99583 * 359.97438 * 22 20 18 24 24 Si 1.86795 * 120.00224 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46971 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47203 * 119.99704 * 24 22 20 27 27 H 1.48506 * 109.47159 * 239.99808 * 24 22 20 28 28 H 1.09003 * 109.46856 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47220 * 299.99369 * 1 2 3 30 30 H 1.08997 * 109.47766 * 59.99495 * 1 2 3 31 31 H 1.08999 * 109.46910 * 240.00632 * 2 1 3 32 32 H 1.08997 * 109.47308 * 120.00231 * 2 1 3 33 33 H 1.08997 * 109.47354 * 300.00757 * 3 2 1 34 34 H 1.09007 * 109.46700 * 60.00313 * 3 2 1 35 35 H 0.96998 * 120.00152 * 0.02562 * 4 3 2 36 36 H 1.07995 * 119.93761 * 359.95345 * 6 5 4 37 37 H 1.08003 * 119.92726 * 179.97438 * 7 6 5 38 38 H 1.08001 * 120.06307 * 180.02562 * 15 8 7 39 39 H 0.97003 * 120.00288 * 145.20966 * 17 16 15 40 40 H 0.97003 * 120.00254 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.2017 2.6496 -0.0002 6 6 3.5072 3.8528 0.0014 7 6 4.1943 5.0482 0.0023 8 6 5.5906 5.0545 0.0023 9 6 6.3265 6.3428 0.0027 10 7 7.6575 6.5051 0.0087 11 7 7.8885 7.7741 0.0044 12 7 6.7656 8.4035 0.0041 13 1 6.6632 9.3681 0.0047 14 7 5.7988 7.5513 0.0032 15 6 6.2923 3.8526 0.0018 16 6 5.6021 2.6498 0.0067 17 7 6.3008 1.4436 0.0115 18 6 7.4680 1.3383 -0.6541 19 8 7.9537 2.3181 -1.1905 20 6 8.1296 0.0887 -0.7297 21 1 7.6991 -0.7800 -0.2537 22 6 9.3436 -0.0207 -1.4213 23 7 9.8644 1.0300 -1.9966 24 14 10.2167 -1.6691 -1.5205 25 1 9.4258 -2.6928 -0.7913 26 1 10.3554 -2.0709 -2.9433 27 1 11.5634 -1.5537 -0.9051 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6765 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 3.9899 0.6026 -0.0013 36 1 2.4273 3.8517 0.0015 37 1 3.6512 5.9818 0.0031 38 1 7.3723 3.8566 0.0022 39 1 5.9470 0.6800 0.4939 40 1 10.7045 0.9543 -2.4756 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590640276.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:20 Heat of formation + Delta-G solvation = 111.368036 kcal Electronic energy + Delta-G solvation = -25493.999563 eV Core-core repulsion = 21732.547099 eV Total energy + Delta-G solvation = -3761.452464 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.01615 -39.54594 -37.24337 -36.27327 -34.16210 -33.70955 -33.04080 -32.25100 -32.16519 -29.41187 -28.56820 -26.40795 -25.72192 -24.27140 -23.25379 -22.58995 -21.35575 -20.69649 -19.59273 -18.85545 -17.68061 -16.73438 -16.71859 -16.11305 -15.73170 -15.57308 -15.37502 -14.32415 -14.11701 -13.92159 -13.67417 -13.30068 -13.19199 -12.87113 -12.59793 -12.55229 -12.24659 -12.07027 -11.88006 -11.55259 -11.28216 -11.21819 -11.18018 -11.09633 -10.94547 -10.86985 -10.66126 -10.61267 -10.48245 -10.26746 -9.34630 -9.23245 -8.79179 -7.71541 -7.46051 -6.53666 -6.29235 -4.83036 1.26207 1.70084 2.10395 2.57461 2.91302 3.07953 3.16255 3.20275 3.62754 4.02223 4.19670 4.36426 4.57934 4.63385 4.74010 4.80396 4.84015 5.09200 5.40740 5.44916 5.49246 5.54292 5.65284 5.77631 5.79475 5.81279 5.89644 5.99260 6.00096 6.06983 6.17764 6.55371 6.65120 6.77186 6.81794 7.11153 7.28808 7.42241 7.59966 7.85816 7.96443 8.10781 8.31041 8.58018 8.87149 9.36464 10.46120 10.68175 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.006814 B = 0.005489 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4107.932110 B = 5099.720568 C = 9089.697418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 C 0.128 3.872 4 N -0.747 5.747 5 C 0.189 3.811 6 C -0.189 4.189 7 C -0.071 4.071 8 C -0.070 4.070 9 C 0.245 3.755 10 N -0.259 5.259 11 N -0.060 5.060 12 N -0.241 5.241 13 H 0.469 0.531 14 N -0.314 5.314 15 C -0.043 4.043 16 C 0.118 3.882 17 N -0.700 5.700 18 C 0.545 3.455 19 O -0.561 6.561 20 C -0.540 4.540 21 H 0.068 0.932 22 C 0.089 3.911 23 N -0.744 5.744 24 Si 0.910 3.090 25 H -0.263 1.263 26 H -0.275 1.275 27 H -0.274 1.274 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.399 0.601 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.159 0.841 39 H 0.385 0.615 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.023 4.534 4.943 16.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.175 4.175 3 C 0.004 3.996 4 N -0.378 5.378 5 C 0.083 3.917 6 C -0.213 4.213 7 C -0.093 4.093 8 C -0.076 4.076 9 C -0.033 4.033 10 N -0.132 5.132 11 N -0.056 5.056 12 N -0.085 5.085 13 H 0.322 0.678 14 N -0.166 5.166 15 C -0.067 4.067 16 C 0.017 3.983 17 N -0.346 5.346 18 C 0.354 3.646 19 O -0.443 6.443 20 C -0.575 4.575 21 H 0.086 0.914 22 C -0.134 4.134 23 N -0.372 5.372 24 Si 0.734 3.266 25 H -0.187 1.187 26 H -0.201 1.201 27 H -0.200 1.200 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.234 0.766 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.176 0.824 39 H 0.218 0.782 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.093 5.656 4.410 15.813 hybrid contribution -0.054 -1.140 0.053 1.143 sum -14.147 4.516 4.463 15.506 Atomic orbital electron populations 1.21671 0.94878 1.01955 1.02054 1.21715 0.96497 0.96416 1.02916 1.21294 0.80589 0.96845 1.00891 1.44402 1.04800 1.05545 1.83084 1.17920 0.89825 0.86620 0.97335 1.20145 0.98770 0.90276 1.12090 1.20623 0.92032 0.97450 0.99176 1.16924 0.91593 0.86571 1.12511 1.23786 0.87941 0.92368 0.99237 1.76273 1.14358 1.05284 1.17280 1.78900 1.10850 1.00696 1.15149 1.47656 1.01520 1.12009 1.47365 0.67827 1.74887 1.17674 0.99805 1.24196 1.21335 1.02232 0.88486 0.94625 1.17295 0.87901 0.88308 1.04762 1.43877 1.25518 1.09911 1.55250 1.17009 0.78466 0.90656 0.78511 1.90679 1.64770 1.39319 1.49580 1.19989 1.06766 0.95079 1.35707 0.91381 1.25733 0.96781 0.97494 0.93408 1.70022 1.15478 1.29264 1.22395 0.86282 0.79521 0.82225 0.78569 1.18682 1.20053 1.19965 0.92400 0.92520 0.92473 0.91242 0.91346 0.92555 0.92521 0.76618 0.86170 0.86080 0.82377 0.78196 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.14 -1.19 6.05 -26.73 -0.16 -1.35 16 3 C 0.13 1.35 4.90 -4.05 -0.02 1.33 16 4 N -0.75 -10.33 5.69 -58.41 -0.33 -10.66 16 5 C 0.19 3.21 6.68 -83.50 -0.56 2.65 16 6 C -0.19 -2.89 9.29 -39.46 -0.37 -3.26 16 7 C -0.07 -1.14 9.69 -39.19 -0.38 -1.52 16 8 C -0.07 -1.35 5.88 -104.86 -0.62 -1.97 16 9 C 0.25 4.64 7.93 -156.26 -1.24 3.40 16 10 N -0.26 -5.26 12.22 32.15 0.39 -4.87 16 11 N -0.06 -1.00 13.47 60.35 0.81 -0.19 16 12 N -0.24 -3.07 7.90 60.35 0.48 -2.60 16 13 H 0.47 3.29 8.96 -340.36 -3.05 0.24 16 14 N -0.31 -4.86 12.07 32.16 0.39 -4.47 16 15 C -0.04 -0.95 8.33 -39.08 -0.33 -1.27 16 16 C 0.12 2.46 6.32 -83.59 -0.53 1.93 16 17 N -0.70 -15.38 4.98 -12.35 -0.06 -15.44 16 18 C 0.54 14.97 7.41 -14.98 -0.11 14.86 16 19 O -0.56 -17.52 12.28 5.09 0.06 -17.46 16 20 C -0.54 -14.56 9.30 -37.59 -0.35 -14.91 16 21 H 0.07 1.66 7.85 -52.48 -0.41 1.25 16 22 C 0.09 2.39 5.50 -17.35 -0.10 2.29 16 23 N -0.74 -21.67 11.73 55.56 0.65 -21.02 16 24 Si 0.91 19.41 29.56 -169.99 -5.02 14.39 16 25 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 26 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 27 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.60 7.94 -51.93 -0.41 0.18 16 34 H 0.06 0.56 7.94 -51.92 -0.41 0.15 16 35 H 0.40 5.45 7.08 -40.82 -0.29 5.16 16 36 H 0.12 1.49 6.71 -52.49 -0.35 1.14 16 37 H 0.12 1.69 7.87 -52.48 -0.41 1.28 16 38 H 0.16 4.14 6.01 -52.49 -0.32 3.82 16 39 H 0.39 7.19 7.67 -40.82 -0.31 6.88 16 40 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 LS Contribution 345.43 15.07 5.21 5.21 Total: -1.00 -35.17 345.43 -9.03 -44.20 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -7.22 Total: 11.42 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -4.38 Total: 1.50 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: 2.33 Total: -59.25 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: 0.06 Total: -17.46 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.17 -9.03 -44.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590640276.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.571 kcal (2) G-P(sol) polarization free energy of solvation -35.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds