Wall clock time and date at job start Tue Mar 31 2020 11:39:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53002 * 109.46837 * 2 1
4 4 N 1.46492 * 109.46993 * 180.02562 * 3 2 1
5 5 C 1.39371 * 120.00284 * 180.02562 * 4 3 2
6 6 C 1.38926 * 120.00466 * 0.02562 * 5 4 3
7 7 C 1.37878 * 120.11971 * 179.97438 * 6 5 4
8 8 C 1.39636 * 120.14580 * 359.97438 * 7 6 5
9 9 C 1.48365 * 119.99388 * 179.97438 * 8 7 6
10 10 N 1.34088 * 126.68445 * 179.68487 * 9 8 7
11 11 N 1.28985 * 107.26592 * 179.88791 * 10 9 8
12 12 N 1.28725 * 108.95618 * 0.38003 * 11 10 9
13 13 H 0.97001 * 125.33301 * 179.75181 * 12 11 10
14 14 N 1.28873 * 109.33231 * 359.75849 * 12 11 10
15 15 C 1.39174 * 120.01587 * 359.97438 * 8 7 6
16 16 C 1.38668 * 119.87780 * 359.74548 * 15 8 7
17 17 N 1.39396 * 120.07368 * 180.24790 * 16 15 8
18 18 C 1.34774 * 120.00212 * 325.21709 * 17 16 15
19 19 O 1.21811 * 119.99589 * 4.52502 * 18 17 16
20 20 C 1.41589 * 120.00310 * 184.52729 * 18 17 16
21 21 H 1.08005 * 120.00286 * 359.97438 * 20 18 17
22 22 C 1.40142 * 120.00284 * 180.02562 * 20 18 17
23 23 N 1.30623 * 119.99583 * 359.97438 * 22 20 18
24 24 Si 1.86795 * 120.00224 * 179.97438 * 22 20 18
25 25 H 1.48505 * 109.46971 * 359.97438 * 24 22 20
26 26 H 1.48495 * 109.47203 * 119.99704 * 24 22 20
27 27 H 1.48506 * 109.47159 * 239.99808 * 24 22 20
28 28 H 1.09003 * 109.46856 * 180.02562 * 1 2 3
29 29 H 1.09007 * 109.47220 * 299.99369 * 1 2 3
30 30 H 1.08997 * 109.47766 * 59.99495 * 1 2 3
31 31 H 1.08999 * 109.46910 * 240.00632 * 2 1 3
32 32 H 1.08997 * 109.47308 * 120.00231 * 2 1 3
33 33 H 1.08997 * 109.47354 * 300.00757 * 3 2 1
34 34 H 1.09007 * 109.46700 * 60.00313 * 3 2 1
35 35 H 0.96998 * 120.00152 * 0.02562 * 4 3 2
36 36 H 1.07995 * 119.93761 * 359.95345 * 6 5 4
37 37 H 1.08003 * 119.92726 * 179.97438 * 7 6 5
38 38 H 1.08001 * 120.06307 * 180.02562 * 15 8 7
39 39 H 0.97003 * 120.00288 * 145.20966 * 17 16 15
40 40 H 0.97003 * 120.00254 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 7 3.5049 1.4426 -0.0006
5 6 4.2017 2.6496 -0.0002
6 6 3.5072 3.8528 0.0014
7 6 4.1943 5.0482 0.0023
8 6 5.5906 5.0545 0.0023
9 6 6.3265 6.3428 0.0027
10 7 7.6575 6.5051 0.0087
11 7 7.8885 7.7741 0.0044
12 7 6.7656 8.4035 0.0041
13 1 6.6632 9.3681 0.0047
14 7 5.7988 7.5513 0.0032
15 6 6.2923 3.8526 0.0018
16 6 5.6021 2.6498 0.0067
17 7 6.3008 1.4436 0.0115
18 6 7.4680 1.3383 -0.6541
19 8 7.9537 2.3181 -1.1905
20 6 8.1296 0.0887 -0.7297
21 1 7.6991 -0.7800 -0.2537
22 6 9.3436 -0.0207 -1.4213
23 7 9.8644 1.0300 -1.9966
24 14 10.2167 -1.6691 -1.5205
25 1 9.4258 -2.6928 -0.7913
26 1 10.3554 -2.0709 -2.9433
27 1 11.5634 -1.5537 -0.9051
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3634 0.5138 0.8901
30 1 -0.3634 0.5139 -0.8899
31 1 1.8933 -0.5137 -0.8900
32 1 1.8934 -0.5138 0.8899
33 1 1.6765 1.9564 -0.8899
34 1 1.6766 1.9563 0.8901
35 1 3.9899 0.6026 -0.0013
36 1 2.4273 3.8517 0.0015
37 1 3.6512 5.9818 0.0031
38 1 7.3723 3.8566 0.0022
39 1 5.9470 0.6800 0.4939
40 1 10.7045 0.9543 -2.4756
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001590640276.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:39:19
Heat of formation + Delta-G solvation = 84.302934 kcal
Electronic energy + Delta-G solvation = -25495.173194 eV
Core-core repulsion = 21732.547099 eV
Total energy + Delta-G solvation = -3762.626095 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.139 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-45.33249 -41.06344 -39.02419 -37.39546 -35.60068 -35.18138 -34.62175 -34.05095
-33.32901 -30.95471 -29.92479 -28.27595 -26.75449 -25.60258 -24.54110 -23.95343
-22.55821 -21.97605 -21.28146 -20.17507 -19.39588 -18.21774 -18.03231 -17.70123
-17.29693 -16.89464 -16.33006 -15.84518 -15.71515 -15.33462 -15.09604 -14.60001
-14.51270 -14.32242 -14.13838 -13.72091 -13.48204 -13.36994 -13.18215 -12.95925
-12.81577 -12.66268 -12.61544 -12.36874 -12.24213 -12.11112 -11.98265 -11.96279
-11.84779 -11.63452 -11.03619 -10.66945 -10.56235 -9.74075 -9.07718 -8.32452
-7.96234 -6.93831 -0.06538 0.32134 0.64914 1.39702 1.40745 1.49349
1.54722 1.58839 2.22987 2.44045 2.50440 2.81291 3.02149 3.12536
3.36789 3.72421 3.99047 4.10406 4.17117 4.29436 4.40136 4.48761
4.52157 4.64188 4.73641 4.79962 4.81465 4.92819 5.12968 5.22490
5.25995 5.32785 5.34785 5.36426 5.46862 5.68610 5.73973 5.88824
5.94367 6.21633 6.27190 6.60760 6.78619 6.79782 7.24512 7.48899
8.47189 8.66282
Molecular weight = 316.14amu
Principal moments of inertia in cm(-1)
A = 0.006814 B = 0.005489 C = 0.003080
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 4107.932110 B = 5099.720568 C = 9089.697418
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.133 4.133
3 C 0.123 3.877
4 N -0.741 5.741
5 C 0.204 3.796
6 C -0.180 4.180
7 C -0.050 4.050
8 C -0.088 4.088
9 C 0.227 3.773
10 N -0.314 5.314
11 N -0.066 5.066
12 N -0.200 5.200
13 H 0.493 0.507
14 N -0.293 5.293
15 C -0.068 4.068
16 C 0.080 3.920
17 N -0.690 5.690
18 C 0.531 3.469
19 O -0.610 6.610
20 C -0.565 4.565
21 H 0.091 0.909
22 C 0.032 3.968
23 N -0.803 5.803
24 Si 0.999 3.001
25 H -0.243 1.243
26 H -0.269 1.269
27 H -0.270 1.270
28 H 0.063 0.937
29 H 0.064 0.936
30 H 0.059 0.941
31 H 0.061 0.939
32 H 0.070 0.930
33 H 0.063 0.937
34 H 0.073 0.927
35 H 0.398 0.602
36 H 0.163 0.837
37 H 0.153 0.847
38 H 0.106 0.894
39 H 0.399 0.601
40 H 0.276 0.724
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.314 3.977 5.525 19.539
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.171 4.171
3 C 0.000 4.000
4 N -0.370 5.370
5 C 0.096 3.904
6 C -0.203 4.203
7 C -0.071 4.071
8 C -0.095 4.095
9 C -0.052 4.052
10 N -0.186 5.186
11 N -0.061 5.061
12 N -0.052 5.052
13 H 0.353 0.647
14 N -0.147 5.147
15 C -0.092 4.092
16 C -0.020 4.020
17 N -0.336 5.336
18 C 0.339 3.661
19 O -0.497 6.497
20 C -0.600 4.600
21 H 0.109 0.891
22 C -0.186 4.186
23 N -0.431 5.431
24 Si 0.818 3.182
25 H -0.166 1.166
26 H -0.194 1.194
27 H -0.195 1.195
28 H 0.082 0.918
29 H 0.083 0.917
30 H 0.078 0.922
31 H 0.080 0.920
32 H 0.088 0.912
33 H 0.081 0.919
34 H 0.092 0.908
35 H 0.233 0.767
36 H 0.181 0.819
37 H 0.171 0.829
38 H 0.124 0.876
39 H 0.234 0.766
40 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -17.461 5.100 5.029 18.873
hybrid contribution 0.788 -0.800 -0.086 1.126
sum -16.673 4.300 4.944 17.914
Atomic orbital electron populations
1.21654 0.93359 1.02600 1.02630 1.21687 0.97675 0.95100 1.02677
1.21582 0.78091 0.98444 1.01911 1.44651 1.06354 1.04455 1.81565
1.17953 0.88263 0.88601 0.95560 1.20580 1.00631 0.88906 1.10209
1.20969 0.90483 0.99237 0.96450 1.17031 0.93032 0.85753 1.13662
1.23834 0.87683 0.93287 1.00399 1.76272 1.15875 1.06926 1.19540
1.78814 1.11703 0.99910 1.15678 1.47721 1.00310 1.13060 1.44071
0.64750 1.74818 1.17556 0.98822 1.23473 1.20971 1.00064 0.90810
0.97374 1.17457 0.89680 0.87101 1.07737 1.43311 1.24415 1.11135
1.54758 1.17378 0.79736 0.90442 0.78518 1.90652 1.66579 1.40772
1.51687 1.20530 1.07569 0.95685 1.36233 0.89138 1.27008 0.97375
1.02101 0.92141 1.70203 1.16372 1.32638 1.23880 0.84949 0.77929
0.76359 0.78920 1.16590 1.19366 1.19519 0.91810 0.91679 0.92153
0.92015 0.91167 0.91856 0.90847 0.76713 0.81942 0.82944 0.87616
0.76557 0.91367
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.58 9.91 71.98 0.71 -0.86 16
2 C -0.13 -1.94 6.05 30.60 0.19 -1.75 16
3 C 0.12 2.15 4.90 86.38 0.42 2.58 16
4 N -0.74 -19.01 5.69 -338.70 -1.93 -20.94 16
5 C 0.20 6.69 6.68 38.55 0.26 6.95 16
6 C -0.18 -4.94 9.29 22.35 0.21 -4.74 16
7 C -0.05 -1.50 9.69 22.52 0.22 -1.28 16
8 C -0.09 -3.50 5.88 -20.02 -0.12 -3.62 16
9 C 0.23 8.77 7.93 137.32 1.09 9.86 16
10 N -0.31 -13.49 12.22 -52.20 -0.64 -14.13 16
11 N -0.07 -2.23 13.47 37.02 0.50 -1.73 16
12 N -0.20 -4.86 7.90 37.02 0.29 -4.57 16
13 H 0.49 5.79 8.96 -347.53 -3.12 2.67 16
14 N -0.29 -8.71 12.07 -52.15 -0.63 -9.34 16
15 C -0.07 -3.23 8.33 22.60 0.19 -3.05 16
16 C 0.08 3.46 6.32 38.48 0.24 3.71 16
17 N -0.69 -31.78 4.98 -311.15 -1.55 -33.33 16
18 C 0.53 30.92 7.41 85.07 0.63 31.55 16
19 O -0.61 -41.23 12.28 -4.70 -0.06 -41.29 16
20 C -0.56 -31.48 9.30 23.56 0.22 -31.26 16
21 H 0.09 4.43 7.85 -2.91 -0.02 4.41 16
22 C 0.03 1.75 5.50 85.34 0.47 2.21 16
23 N -0.80 -49.26 11.73 21.85 0.26 -49.00 16
24 Si 1.00 40.38 29.56 68.60 2.03 42.41 16
25 H -0.24 -8.94 7.11 99.48 0.71 -8.23 16
26 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16
27 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16
28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16
29 H 0.06 0.61 8.14 -2.38 -0.02 0.60 16
30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16
31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16
32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16
33 H 0.06 1.08 7.94 -2.39 -0.02 1.06 16
34 H 0.07 1.11 7.94 -2.38 -0.02 1.09 16
35 H 0.40 10.40 7.08 -92.71 -0.66 9.74 16
36 H 0.16 3.13 6.71 -2.91 -0.02 3.11 16
37 H 0.15 3.65 7.87 -2.91 -0.02 3.63 16
38 H 0.11 6.17 6.01 -2.91 -0.02 6.15 16
39 H 0.40 15.35 7.67 -92.71 -0.71 14.64 16
40 H 0.28 15.35 8.29 -92.71 -0.77 14.58 16
Total: -1.00 -84.36 345.43 -0.35 -84.71
By element:
Atomic # 1 Polarization: 40.27 SS G_CDS: -3.35 Total: 36.92 kcal
Atomic # 6 Polarization: 5.57 SS G_CDS: 4.73 Total: 10.29 kcal
Atomic # 7 Polarization: -129.35 SS G_CDS: -3.70 Total: -133.04 kcal
Atomic # 8 Polarization: -41.23 SS G_CDS: -0.06 Total: -41.29 kcal
Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal
Total: -84.36 -0.35 -84.71 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001590640276.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 169.012 kcal
(2) G-P(sol) polarization free energy of solvation -84.360 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.651 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.348 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.709 kcal
(6) G-S(sol) free energy of system = (1) + (5) 84.303 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds