Wall clock time and date at job start Tue Mar 31 2020 11:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46837 * 2 1 4 4 N 1.46492 * 109.46993 * 180.02562 * 3 2 1 5 5 C 1.39371 * 120.00284 * 180.02562 * 4 3 2 6 6 C 1.38926 * 120.00466 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.11971 * 179.97438 * 6 5 4 8 8 C 1.39636 * 120.14580 * 359.97438 * 7 6 5 9 9 C 1.48365 * 119.99388 * 179.97438 * 8 7 6 10 10 N 1.34088 * 126.68445 * 179.68487 * 9 8 7 11 11 N 1.28985 * 107.26592 * 179.88791 * 10 9 8 12 12 N 1.28725 * 108.95618 * 0.38003 * 11 10 9 13 13 H 0.97001 * 125.33301 * 179.75181 * 12 11 10 14 14 N 1.28873 * 109.33231 * 359.75849 * 12 11 10 15 15 C 1.39174 * 120.01587 * 359.97438 * 8 7 6 16 16 C 1.38668 * 119.87780 * 359.74548 * 15 8 7 17 17 N 1.39396 * 120.07368 * 180.24790 * 16 15 8 18 18 C 1.34774 * 120.00212 * 325.21709 * 17 16 15 19 19 O 1.21811 * 119.99589 * 4.52502 * 18 17 16 20 20 C 1.41589 * 120.00310 * 184.52729 * 18 17 16 21 21 H 1.08005 * 120.00286 * 359.97438 * 20 18 17 22 22 C 1.40142 * 120.00284 * 180.02562 * 20 18 17 23 23 N 1.30623 * 119.99583 * 359.97438 * 22 20 18 24 24 Si 1.86795 * 120.00224 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46971 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47203 * 119.99704 * 24 22 20 27 27 H 1.48506 * 109.47159 * 239.99808 * 24 22 20 28 28 H 1.09003 * 109.46856 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47220 * 299.99369 * 1 2 3 30 30 H 1.08997 * 109.47766 * 59.99495 * 1 2 3 31 31 H 1.08999 * 109.46910 * 240.00632 * 2 1 3 32 32 H 1.08997 * 109.47308 * 120.00231 * 2 1 3 33 33 H 1.08997 * 109.47354 * 300.00757 * 3 2 1 34 34 H 1.09007 * 109.46700 * 60.00313 * 3 2 1 35 35 H 0.96998 * 120.00152 * 0.02562 * 4 3 2 36 36 H 1.07995 * 119.93761 * 359.95345 * 6 5 4 37 37 H 1.08003 * 119.92726 * 179.97438 * 7 6 5 38 38 H 1.08001 * 120.06307 * 180.02562 * 15 8 7 39 39 H 0.97003 * 120.00288 * 145.20966 * 17 16 15 40 40 H 0.97003 * 120.00254 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.2017 2.6496 -0.0002 6 6 3.5072 3.8528 0.0014 7 6 4.1943 5.0482 0.0023 8 6 5.5906 5.0545 0.0023 9 6 6.3265 6.3428 0.0027 10 7 7.6575 6.5051 0.0087 11 7 7.8885 7.7741 0.0044 12 7 6.7656 8.4035 0.0041 13 1 6.6632 9.3681 0.0047 14 7 5.7988 7.5513 0.0032 15 6 6.2923 3.8526 0.0018 16 6 5.6021 2.6498 0.0067 17 7 6.3008 1.4436 0.0115 18 6 7.4680 1.3383 -0.6541 19 8 7.9537 2.3181 -1.1905 20 6 8.1296 0.0887 -0.7297 21 1 7.6991 -0.7800 -0.2537 22 6 9.3436 -0.0207 -1.4213 23 7 9.8644 1.0300 -1.9966 24 14 10.2167 -1.6691 -1.5205 25 1 9.4258 -2.6928 -0.7913 26 1 10.3554 -2.0709 -2.9433 27 1 11.5634 -1.5537 -0.9051 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6765 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 3.9899 0.6026 -0.0013 36 1 2.4273 3.8517 0.0015 37 1 3.6512 5.9818 0.0031 38 1 7.3723 3.8566 0.0022 39 1 5.9470 0.6800 0.4939 40 1 10.7045 0.9543 -2.4756 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590640276.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:19 Heat of formation + Delta-G solvation = 84.302934 kcal Electronic energy + Delta-G solvation = -25495.173194 eV Core-core repulsion = 21732.547099 eV Total energy + Delta-G solvation = -3762.626095 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.33249 -41.06344 -39.02419 -37.39546 -35.60068 -35.18138 -34.62175 -34.05095 -33.32901 -30.95471 -29.92479 -28.27595 -26.75449 -25.60258 -24.54110 -23.95343 -22.55821 -21.97605 -21.28146 -20.17507 -19.39588 -18.21774 -18.03231 -17.70123 -17.29693 -16.89464 -16.33006 -15.84518 -15.71515 -15.33462 -15.09604 -14.60001 -14.51270 -14.32242 -14.13838 -13.72091 -13.48204 -13.36994 -13.18215 -12.95925 -12.81577 -12.66268 -12.61544 -12.36874 -12.24213 -12.11112 -11.98265 -11.96279 -11.84779 -11.63452 -11.03619 -10.66945 -10.56235 -9.74075 -9.07718 -8.32452 -7.96234 -6.93831 -0.06538 0.32134 0.64914 1.39702 1.40745 1.49349 1.54722 1.58839 2.22987 2.44045 2.50440 2.81291 3.02149 3.12536 3.36789 3.72421 3.99047 4.10406 4.17117 4.29436 4.40136 4.48761 4.52157 4.64188 4.73641 4.79962 4.81465 4.92819 5.12968 5.22490 5.25995 5.32785 5.34785 5.36426 5.46862 5.68610 5.73973 5.88824 5.94367 6.21633 6.27190 6.60760 6.78619 6.79782 7.24512 7.48899 8.47189 8.66282 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.006814 B = 0.005489 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4107.932110 B = 5099.720568 C = 9089.697418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C 0.123 3.877 4 N -0.741 5.741 5 C 0.204 3.796 6 C -0.180 4.180 7 C -0.050 4.050 8 C -0.088 4.088 9 C 0.227 3.773 10 N -0.314 5.314 11 N -0.066 5.066 12 N -0.200 5.200 13 H 0.493 0.507 14 N -0.293 5.293 15 C -0.068 4.068 16 C 0.080 3.920 17 N -0.690 5.690 18 C 0.531 3.469 19 O -0.610 6.610 20 C -0.565 4.565 21 H 0.091 0.909 22 C 0.032 3.968 23 N -0.803 5.803 24 Si 0.999 3.001 25 H -0.243 1.243 26 H -0.269 1.269 27 H -0.270 1.270 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.398 0.602 36 H 0.163 0.837 37 H 0.153 0.847 38 H 0.106 0.894 39 H 0.399 0.601 40 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.314 3.977 5.525 19.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.171 4.171 3 C 0.000 4.000 4 N -0.370 5.370 5 C 0.096 3.904 6 C -0.203 4.203 7 C -0.071 4.071 8 C -0.095 4.095 9 C -0.052 4.052 10 N -0.186 5.186 11 N -0.061 5.061 12 N -0.052 5.052 13 H 0.353 0.647 14 N -0.147 5.147 15 C -0.092 4.092 16 C -0.020 4.020 17 N -0.336 5.336 18 C 0.339 3.661 19 O -0.497 6.497 20 C -0.600 4.600 21 H 0.109 0.891 22 C -0.186 4.186 23 N -0.431 5.431 24 Si 0.818 3.182 25 H -0.166 1.166 26 H -0.194 1.194 27 H -0.195 1.195 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.233 0.767 36 H 0.181 0.819 37 H 0.171 0.829 38 H 0.124 0.876 39 H 0.234 0.766 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.461 5.100 5.029 18.873 hybrid contribution 0.788 -0.800 -0.086 1.126 sum -16.673 4.300 4.944 17.914 Atomic orbital electron populations 1.21654 0.93359 1.02600 1.02630 1.21687 0.97675 0.95100 1.02677 1.21582 0.78091 0.98444 1.01911 1.44651 1.06354 1.04455 1.81565 1.17953 0.88263 0.88601 0.95560 1.20580 1.00631 0.88906 1.10209 1.20969 0.90483 0.99237 0.96450 1.17031 0.93032 0.85753 1.13662 1.23834 0.87683 0.93287 1.00399 1.76272 1.15875 1.06926 1.19540 1.78814 1.11703 0.99910 1.15678 1.47721 1.00310 1.13060 1.44071 0.64750 1.74818 1.17556 0.98822 1.23473 1.20971 1.00064 0.90810 0.97374 1.17457 0.89680 0.87101 1.07737 1.43311 1.24415 1.11135 1.54758 1.17378 0.79736 0.90442 0.78518 1.90652 1.66579 1.40772 1.51687 1.20530 1.07569 0.95685 1.36233 0.89138 1.27008 0.97375 1.02101 0.92141 1.70203 1.16372 1.32638 1.23880 0.84949 0.77929 0.76359 0.78920 1.16590 1.19366 1.19519 0.91810 0.91679 0.92153 0.92015 0.91167 0.91856 0.90847 0.76713 0.81942 0.82944 0.87616 0.76557 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.91 71.98 0.71 -0.86 16 2 C -0.13 -1.94 6.05 30.60 0.19 -1.75 16 3 C 0.12 2.15 4.90 86.38 0.42 2.58 16 4 N -0.74 -19.01 5.69 -338.70 -1.93 -20.94 16 5 C 0.20 6.69 6.68 38.55 0.26 6.95 16 6 C -0.18 -4.94 9.29 22.35 0.21 -4.74 16 7 C -0.05 -1.50 9.69 22.52 0.22 -1.28 16 8 C -0.09 -3.50 5.88 -20.02 -0.12 -3.62 16 9 C 0.23 8.77 7.93 137.32 1.09 9.86 16 10 N -0.31 -13.49 12.22 -52.20 -0.64 -14.13 16 11 N -0.07 -2.23 13.47 37.02 0.50 -1.73 16 12 N -0.20 -4.86 7.90 37.02 0.29 -4.57 16 13 H 0.49 5.79 8.96 -347.53 -3.12 2.67 16 14 N -0.29 -8.71 12.07 -52.15 -0.63 -9.34 16 15 C -0.07 -3.23 8.33 22.60 0.19 -3.05 16 16 C 0.08 3.46 6.32 38.48 0.24 3.71 16 17 N -0.69 -31.78 4.98 -311.15 -1.55 -33.33 16 18 C 0.53 30.92 7.41 85.07 0.63 31.55 16 19 O -0.61 -41.23 12.28 -4.70 -0.06 -41.29 16 20 C -0.56 -31.48 9.30 23.56 0.22 -31.26 16 21 H 0.09 4.43 7.85 -2.91 -0.02 4.41 16 22 C 0.03 1.75 5.50 85.34 0.47 2.21 16 23 N -0.80 -49.26 11.73 21.85 0.26 -49.00 16 24 Si 1.00 40.38 29.56 68.60 2.03 42.41 16 25 H -0.24 -8.94 7.11 99.48 0.71 -8.23 16 26 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 27 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.61 8.14 -2.38 -0.02 0.60 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.06 1.08 7.94 -2.39 -0.02 1.06 16 34 H 0.07 1.11 7.94 -2.38 -0.02 1.09 16 35 H 0.40 10.40 7.08 -92.71 -0.66 9.74 16 36 H 0.16 3.13 6.71 -2.91 -0.02 3.11 16 37 H 0.15 3.65 7.87 -2.91 -0.02 3.63 16 38 H 0.11 6.17 6.01 -2.91 -0.02 6.15 16 39 H 0.40 15.35 7.67 -92.71 -0.71 14.64 16 40 H 0.28 15.35 8.29 -92.71 -0.77 14.58 16 Total: -1.00 -84.36 345.43 -0.35 -84.71 By element: Atomic # 1 Polarization: 40.27 SS G_CDS: -3.35 Total: 36.92 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 4.73 Total: 10.29 kcal Atomic # 7 Polarization: -129.35 SS G_CDS: -3.70 Total: -133.04 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -0.06 Total: -41.29 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Total: -84.36 -0.35 -84.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590640276.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.012 kcal (2) G-P(sol) polarization free energy of solvation -84.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds