Wall clock time and date at job start Tue Mar 31 2020 10:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38699 * 120.09074 * 2 1 4 4 N 1.39960 * 120.01463 * 359.97438 * 3 2 1 5 5 C 1.34774 * 120.00106 * 214.51840 * 4 3 2 6 6 O 1.21582 * 119.99733 * 355.47001 * 5 4 3 7 7 N 1.34777 * 120.00012 * 175.46371 * 5 4 3 8 8 C 1.46493 * 120.00100 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.47018 * 34.99910 * 8 7 5 10 10 C 1.53000 * 109.47251 * 275.00261 * 8 7 5 11 11 C 1.50699 * 109.47232 * 154.99666 * 8 7 5 12 12 H 1.07998 * 120.00072 * 0.02562 * 11 8 7 13 13 C 1.37883 * 120.00159 * 179.97438 * 11 8 7 14 14 N 1.31511 * 119.99561 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 120.00081 * 180.02562 * 13 11 8 16 16 H 1.48492 * 109.47212 * 89.99916 * 15 13 11 17 17 H 1.48504 * 109.46843 * 210.00187 * 15 13 11 18 18 H 1.48498 * 109.46845 * 329.99874 * 15 13 11 19 19 C 1.38912 * 119.96961 * 179.72259 * 3 2 1 20 20 C 1.38212 * 120.16995 * 0.27328 * 19 3 2 21 21 C 1.38043 * 120.19175 * 0.02562 * 20 19 3 22 22 C 1.39166 * 120.09902 * 180.26992 * 2 1 3 23 23 C 1.48470 * 120.08043 * 359.97438 * 22 2 1 24 24 N 1.34052 * 126.67378 * 359.97438 * 23 22 2 25 25 N 1.28982 * 107.26749 * 179.87088 * 24 23 22 26 26 N 1.28740 * 108.94352 * 0.39741 * 25 24 23 27 27 H 0.97003 * 125.33858 * 179.78434 * 26 25 24 28 28 N 1.28866 * 109.31631 * 359.74745 * 26 25 24 29 29 H 1.09006 * 109.46847 * 90.00172 * 1 2 3 30 30 H 1.09002 * 109.47111 * 210.00190 * 1 2 3 31 31 H 1.08997 * 109.47074 * 330.00119 * 1 2 3 32 32 H 0.96998 * 119.99424 * 34.52190 * 4 3 2 33 33 H 0.96998 * 119.99501 * 359.97438 * 7 5 4 34 34 H 1.09004 * 109.46823 * 299.99768 * 10 8 7 35 35 H 1.09001 * 109.47404 * 180.02562 * 10 8 7 36 36 H 1.08994 * 109.47016 * 59.99397 * 10 8 7 37 37 H 0.97008 * 119.99598 * 180.02562 * 14 13 11 38 38 H 1.08003 * 119.91243 * 180.29308 * 19 3 2 39 39 H 1.08004 * 119.90257 * 180.02562 * 20 19 3 40 40 H 1.07996 * 119.99139 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2024 1.2001 0.0000 4 7 1.5049 2.4134 -0.0005 5 6 2.0030 3.4768 -0.6620 6 8 3.0965 3.4073 -1.1887 7 7 1.2888 4.6172 -0.7396 8 6 1.8299 5.7729 -1.4590 9 1 2.4069 5.4288 -2.3175 10 6 2.7362 6.5767 -0.5245 11 6 0.6963 6.6455 -1.9329 12 1 -0.3251 6.3673 -1.7191 13 6 0.9632 7.7997 -2.6385 14 7 2.2070 8.1387 -2.8983 15 14 -0.4419 8.8817 -3.2252 16 1 -0.7602 9.8889 -2.1815 17 1 -0.0437 9.5745 -4.4769 18 1 -1.6388 8.0416 -3.4837 19 6 3.5915 1.1971 0.0058 20 6 4.2836 0.0008 0.0059 21 6 3.5985 -1.1976 -0.0003 22 6 2.2050 -1.2040 -0.0057 23 6 1.4666 -2.4921 -0.0112 24 7 0.1357 -2.6521 -0.0109 25 7 -0.0975 -3.9206 -0.0195 26 7 1.0246 -4.5518 -0.0166 27 1 1.1256 -5.5165 -0.0185 28 7 1.9923 -3.7009 -0.0115 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 0.6629 2.4890 0.4752 33 1 0.4161 4.6723 -0.3197 34 1 2.1592 6.9208 0.3339 35 1 3.1386 7.4369 -1.0597 36 1 3.5561 5.9455 -0.1818 37 1 2.3948 8.9509 -3.3944 38 1 4.1321 2.1322 0.0106 39 1 5.3637 0.0035 0.0109 40 1 4.1425 -2.1305 -0.0006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591826424.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:52 Heat of formation + Delta-G solvation = 128.761291 kcal Electronic energy + Delta-G solvation = -25361.079834 eV Core-core repulsion = 21600.381597 eV Total energy + Delta-G solvation = -3760.698236 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.64954 -40.38807 -38.63432 -35.34333 -34.67342 -34.39058 -33.59370 -32.44616 -31.99258 -29.86434 -28.40166 -26.87339 -25.26101 -25.07383 -24.23615 -22.56341 -21.33786 -20.76599 -19.90819 -19.29695 -18.17862 -17.52493 -17.34359 -16.05680 -15.67493 -15.38012 -15.20092 -14.67579 -14.43758 -14.24127 -13.82903 -13.74954 -13.31463 -13.25245 -12.79079 -12.41219 -12.23317 -12.03375 -11.78300 -11.75590 -11.58205 -11.36264 -11.11225 -11.08191 -10.95359 -10.78437 -10.75839 -10.33082 -10.23943 -10.00870 -9.38401 -9.05449 -8.57865 -8.55748 -8.12661 -7.72070 -6.13259 -4.22271 0.63232 1.05310 1.37349 2.01792 2.28218 3.11941 3.24456 3.31726 3.34444 3.55207 3.65425 3.99814 4.04977 4.32328 4.81920 4.93126 4.98986 5.09291 5.19671 5.20235 5.26784 5.47664 5.60742 5.74762 5.81098 5.88395 6.13962 6.34467 6.38487 6.43508 6.50701 6.67125 6.79461 6.96492 7.10528 7.14976 7.23203 7.44645 7.61707 7.82314 7.95592 7.98397 8.14522 8.71739 8.83476 9.21892 9.45996 10.92820 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.025278 B = 0.002634 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.410913 B =10627.609214 C =11438.166140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.075 4.075 3 C 0.176 3.824 4 N -0.694 5.694 5 C 0.694 3.306 6 O -0.582 6.582 7 N -0.718 5.718 8 C 0.280 3.720 9 H 0.050 0.950 10 C -0.148 4.148 11 C -0.534 4.534 12 H 0.061 0.939 13 C 0.066 3.934 14 N -0.883 5.883 15 Si 0.903 3.097 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.094 4.094 20 C -0.111 4.111 21 C -0.100 4.100 22 C -0.016 4.016 23 C 0.234 3.766 24 N -0.267 5.267 25 N -0.056 5.056 26 N -0.230 5.230 27 H 0.474 0.526 28 N -0.298 5.298 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.403 0.597 33 H 0.387 0.613 34 H 0.026 0.974 35 H 0.091 0.909 36 H 0.015 0.985 37 H 0.265 0.735 38 H 0.150 0.850 39 H 0.131 0.869 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.236 -22.328 8.640 23.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.080 4.080 3 C 0.080 3.920 4 N -0.342 5.342 5 C 0.394 3.606 6 O -0.460 6.460 7 N -0.369 5.369 8 C 0.179 3.821 9 H 0.068 0.932 10 C -0.207 4.207 11 C -0.572 4.572 12 H 0.079 0.921 13 C -0.137 4.137 14 N -0.520 5.520 15 Si 0.730 3.270 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.115 4.115 20 C -0.130 4.130 21 C -0.121 4.121 22 C -0.020 4.020 23 C -0.046 4.046 24 N -0.140 5.140 25 N -0.051 5.051 26 N -0.075 5.075 27 H 0.328 0.672 28 N -0.149 5.149 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.078 0.922 32 H 0.239 0.761 33 H 0.219 0.781 34 H 0.045 0.955 35 H 0.109 0.891 36 H 0.034 0.966 37 H 0.075 0.925 38 H 0.168 0.832 39 H 0.149 0.851 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.714 -22.478 7.998 23.869 hybrid contribution -1.081 0.333 0.025 1.132 sum -1.795 -22.145 8.023 23.622 Atomic orbital electron populations 1.21063 0.89982 1.03656 1.03318 1.19616 0.96631 0.90316 1.01437 1.17163 0.91063 0.84070 0.99729 1.42832 1.26505 1.09429 1.55482 1.16133 0.84769 0.80226 0.79433 1.90861 1.20383 1.82713 1.52019 1.45867 1.20860 1.12466 1.57685 1.18690 0.93401 0.79898 0.90147 0.93226 1.22109 0.97898 1.01712 0.98975 1.21206 0.92505 1.07217 1.36304 0.92055 1.24879 0.95913 0.97383 0.95525 1.69904 1.17887 1.24826 1.39415 0.86431 0.81957 0.80359 0.78251 1.20549 1.21066 1.19854 1.21649 0.92811 0.99935 0.97135 1.20953 1.00161 0.91288 1.00592 1.21009 0.91989 0.98846 1.00246 1.16771 0.91863 0.85689 1.07698 1.23677 0.88017 0.92350 1.00519 1.76160 1.13957 1.05531 1.18316 1.78932 1.10980 1.00592 1.14564 1.47705 1.01238 1.12340 1.46228 0.67229 1.74932 1.17692 0.99698 1.22597 0.90720 0.88327 0.92233 0.76120 0.78124 0.95505 0.89084 0.96551 0.92543 0.83237 0.85112 0.85304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 8.94 36.01 0.32 -1.11 16 2 C -0.07 -0.99 5.92 -104.11 -0.62 -1.61 16 3 C 0.18 2.63 6.28 -83.73 -0.53 2.10 16 4 N -0.69 -10.53 5.04 -14.25 -0.07 -10.61 16 5 C 0.69 13.73 8.37 -86.92 -0.73 13.00 16 6 O -0.58 -13.58 13.42 5.29 0.07 -13.51 16 7 N -0.72 -14.61 5.07 -59.82 -0.30 -14.92 16 8 C 0.28 7.02 2.56 -69.09 -0.18 6.85 16 9 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 10 C -0.15 -3.63 9.26 37.16 0.34 -3.28 16 11 C -0.53 -13.96 8.73 -34.44 -0.30 -14.26 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 14 N -0.88 -24.65 11.32 55.43 0.63 -24.02 16 15 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 19 C -0.09 -1.42 8.69 -39.34 -0.34 -1.76 16 20 C -0.11 -1.36 10.03 -39.66 -0.40 -1.76 16 21 C -0.10 -1.16 9.69 -39.24 -0.38 -1.54 16 22 C -0.02 -0.21 5.87 -104.92 -0.62 -0.82 16 23 C 0.23 2.80 7.79 -156.29 -1.22 1.58 16 24 N -0.27 -3.21 9.08 32.16 0.29 -2.91 16 25 N -0.06 -0.56 13.47 60.35 0.81 0.26 16 26 N -0.23 -1.67 7.90 60.35 0.48 -1.19 16 27 H 0.47 1.05 8.96 -340.36 -3.05 -2.00 16 28 N -0.30 -2.98 12.08 32.17 0.39 -2.59 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.10 1.14 5.17 -51.93 -0.27 0.87 16 31 H 0.06 0.59 6.51 -51.93 -0.34 0.25 16 32 H 0.40 4.83 7.21 -40.82 -0.29 4.54 16 33 H 0.39 6.70 8.56 -40.82 -0.35 6.35 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.15 2.56 6.19 -52.48 -0.32 2.24 16 39 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 40 H 0.13 1.25 7.88 -52.49 -0.41 0.84 16 LS Contribution 338.32 15.07 5.10 5.10 Total: -1.00 -32.66 338.32 -9.34 -42.00 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -6.98 Total: 7.85 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -4.73 Total: -0.93 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: 2.22 Total: -55.99 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.07 Total: -13.51 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.66 -9.34 -42.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591826424.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.761 kcal (2) G-P(sol) polarization free energy of solvation -32.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds