Wall clock time and date at job start Tue Mar 31 2020 10:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38699 * 120.09074 * 2 1 4 4 N 1.39960 * 120.01463 * 359.97438 * 3 2 1 5 5 C 1.34774 * 120.00106 * 214.51840 * 4 3 2 6 6 O 1.21582 * 119.99733 * 355.47001 * 5 4 3 7 7 N 1.34777 * 120.00012 * 175.46371 * 5 4 3 8 8 C 1.46493 * 120.00100 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.47018 * 34.99910 * 8 7 5 10 10 C 1.53000 * 109.47251 * 275.00261 * 8 7 5 11 11 C 1.50699 * 109.47232 * 154.99666 * 8 7 5 12 12 H 1.07998 * 120.00072 * 0.02562 * 11 8 7 13 13 C 1.37883 * 120.00159 * 179.97438 * 11 8 7 14 14 N 1.31511 * 119.99561 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 120.00081 * 180.02562 * 13 11 8 16 16 H 1.48492 * 109.47212 * 89.99916 * 15 13 11 17 17 H 1.48504 * 109.46843 * 210.00187 * 15 13 11 18 18 H 1.48498 * 109.46845 * 329.99874 * 15 13 11 19 19 C 1.38912 * 119.96961 * 179.72259 * 3 2 1 20 20 C 1.38212 * 120.16995 * 0.27328 * 19 3 2 21 21 C 1.38043 * 120.19175 * 0.02562 * 20 19 3 22 22 C 1.39166 * 120.09902 * 180.26992 * 2 1 3 23 23 C 1.48470 * 120.08043 * 359.97438 * 22 2 1 24 24 N 1.34052 * 126.67378 * 359.97438 * 23 22 2 25 25 N 1.28982 * 107.26749 * 179.87088 * 24 23 22 26 26 N 1.28740 * 108.94352 * 0.39741 * 25 24 23 27 27 H 0.97003 * 125.33858 * 179.78434 * 26 25 24 28 28 N 1.28866 * 109.31631 * 359.74745 * 26 25 24 29 29 H 1.09006 * 109.46847 * 90.00172 * 1 2 3 30 30 H 1.09002 * 109.47111 * 210.00190 * 1 2 3 31 31 H 1.08997 * 109.47074 * 330.00119 * 1 2 3 32 32 H 0.96998 * 119.99424 * 34.52190 * 4 3 2 33 33 H 0.96998 * 119.99501 * 359.97438 * 7 5 4 34 34 H 1.09004 * 109.46823 * 299.99768 * 10 8 7 35 35 H 1.09001 * 109.47404 * 180.02562 * 10 8 7 36 36 H 1.08994 * 109.47016 * 59.99397 * 10 8 7 37 37 H 0.97008 * 119.99598 * 180.02562 * 14 13 11 38 38 H 1.08003 * 119.91243 * 180.29308 * 19 3 2 39 39 H 1.08004 * 119.90257 * 180.02562 * 20 19 3 40 40 H 1.07996 * 119.99139 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2024 1.2001 0.0000 4 7 1.5049 2.4134 -0.0005 5 6 2.0030 3.4768 -0.6620 6 8 3.0965 3.4073 -1.1887 7 7 1.2888 4.6172 -0.7396 8 6 1.8299 5.7729 -1.4590 9 1 2.4069 5.4288 -2.3175 10 6 2.7362 6.5767 -0.5245 11 6 0.6963 6.6455 -1.9329 12 1 -0.3251 6.3673 -1.7191 13 6 0.9632 7.7997 -2.6385 14 7 2.2070 8.1387 -2.8983 15 14 -0.4419 8.8817 -3.2252 16 1 -0.7602 9.8889 -2.1815 17 1 -0.0437 9.5745 -4.4769 18 1 -1.6388 8.0416 -3.4837 19 6 3.5915 1.1971 0.0058 20 6 4.2836 0.0008 0.0059 21 6 3.5985 -1.1976 -0.0003 22 6 2.2050 -1.2040 -0.0057 23 6 1.4666 -2.4921 -0.0112 24 7 0.1357 -2.6521 -0.0109 25 7 -0.0975 -3.9206 -0.0195 26 7 1.0246 -4.5518 -0.0166 27 1 1.1256 -5.5165 -0.0185 28 7 1.9923 -3.7009 -0.0115 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 0.6629 2.4890 0.4752 33 1 0.4161 4.6723 -0.3197 34 1 2.1592 6.9208 0.3339 35 1 3.1386 7.4369 -1.0597 36 1 3.5561 5.9455 -0.1818 37 1 2.3948 8.9509 -3.3944 38 1 4.1321 2.1322 0.0106 39 1 5.3637 0.0035 0.0109 40 1 4.1425 -2.1305 -0.0006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591826424.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:51 Heat of formation + Delta-G solvation = 105.933259 kcal Electronic energy + Delta-G solvation = -25362.069731 eV Core-core repulsion = 21600.381597 eV Total energy + Delta-G solvation = -3761.688134 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.43693 -41.70387 -39.94891 -36.97258 -35.88817 -35.51889 -34.56234 -34.22454 -33.03785 -31.28450 -29.91752 -27.89467 -27.30488 -25.94691 -25.11041 -23.98636 -22.40644 -22.16130 -21.48123 -20.22681 -19.63726 -18.75790 -18.11883 -17.84190 -17.02605 -16.71991 -16.49822 -16.24140 -15.64100 -15.48653 -15.14429 -14.98321 -14.66662 -14.36171 -14.26985 -13.72924 -13.67302 -13.20444 -12.98974 -12.91962 -12.84991 -12.75384 -12.67917 -12.43159 -12.29500 -12.24447 -12.11496 -12.00346 -11.66196 -11.28130 -11.07168 -10.95971 -10.57989 -9.82654 -9.56070 -8.97475 -8.15773 -6.32535 -0.27820 0.21882 0.33170 1.32731 1.43329 1.47044 1.47804 1.57929 1.77698 2.21440 2.43609 2.67727 2.84633 3.14997 3.19485 3.46045 3.88572 4.01876 4.14540 4.25895 4.43346 4.46150 4.55220 4.77074 4.81329 4.83786 4.91879 4.97199 5.12490 5.29227 5.37067 5.42119 5.46696 5.49755 5.56778 5.62786 5.65950 5.70386 5.87463 6.01900 6.12209 6.26859 6.75199 7.15658 7.23834 7.36013 7.69175 8.90707 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.025278 B = 0.002634 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.410913 B =10627.609214 C =11438.166140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.074 4.074 3 C 0.153 3.847 4 N -0.674 5.674 5 C 0.695 3.305 6 O -0.621 6.621 7 N -0.714 5.714 8 C 0.289 3.711 9 H 0.000 1.000 10 C -0.134 4.134 11 C -0.546 4.546 12 H 0.074 0.926 13 C 0.015 3.985 14 N -0.917 5.917 15 Si 0.973 3.027 16 H -0.271 1.271 17 H -0.287 1.287 18 H -0.265 1.265 19 C -0.116 4.116 20 C -0.106 4.106 21 C -0.089 4.089 22 C -0.020 4.020 23 C 0.218 3.782 24 N -0.287 5.287 25 N -0.060 5.060 26 N -0.199 5.199 27 H 0.494 0.506 28 N -0.292 5.292 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.419 0.581 33 H 0.403 0.597 34 H 0.040 0.960 35 H 0.067 0.933 36 H 0.014 0.986 37 H 0.265 0.735 38 H 0.123 0.877 39 H 0.155 0.845 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.674 -24.287 9.377 26.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.079 4.079 3 C 0.057 3.943 4 N -0.324 5.324 5 C 0.395 3.605 6 O -0.502 6.502 7 N -0.366 5.366 8 C 0.186 3.814 9 H 0.018 0.982 10 C -0.193 4.193 11 C -0.584 4.584 12 H 0.092 0.908 13 C -0.185 4.185 14 N -0.555 5.555 15 Si 0.797 3.203 16 H -0.196 1.196 17 H -0.213 1.213 18 H -0.189 1.189 19 C -0.137 4.137 20 C -0.125 4.125 21 C -0.110 4.110 22 C -0.024 4.024 23 C -0.062 4.062 24 N -0.158 5.158 25 N -0.055 5.055 26 N -0.050 5.050 27 H 0.353 0.647 28 N -0.145 5.145 29 H 0.087 0.913 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.258 0.742 33 H 0.238 0.762 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.033 0.967 37 H 0.075 0.925 38 H 0.140 0.860 39 H 0.172 0.828 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.205 -24.509 8.783 26.129 hybrid contribution -0.572 0.699 -0.183 0.921 sum -2.777 -23.810 8.600 25.468 Atomic orbital electron populations 1.21072 0.88885 1.04586 1.03179 1.19722 0.97440 0.89852 1.00863 1.17308 0.91205 0.84164 1.01608 1.42449 1.26899 1.08475 1.54596 1.16192 0.84173 0.80784 0.79336 1.90841 1.22173 1.83497 1.53675 1.45452 1.21633 1.11820 1.57741 1.18251 0.93018 0.81022 0.89131 0.98187 1.21923 0.97855 1.00658 0.98902 1.21533 0.93160 1.07389 1.36329 0.90823 1.25778 0.98307 0.98842 0.95609 1.70054 1.20016 1.25334 1.40093 0.85337 0.78882 0.78487 0.77574 1.19617 1.21329 1.18907 1.21575 0.93164 1.00002 0.98977 1.21176 1.01362 0.90460 0.99483 1.21266 0.91755 0.99430 0.98536 1.16963 0.92453 0.86004 1.06996 1.23554 0.88174 0.92561 1.01898 1.76135 1.14135 1.06464 1.19113 1.78887 1.11528 1.00177 1.14865 1.47770 1.00167 1.13223 1.43819 0.64662 1.74882 1.18121 0.99376 1.22089 0.91270 0.87985 0.90774 0.74215 0.76162 0.94117 0.91427 0.96735 0.92544 0.85958 0.82758 0.82883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 8.94 71.24 0.64 -2.01 16 2 C -0.07 -1.89 5.92 -19.53 -0.12 -2.01 16 3 C 0.15 4.55 6.28 38.11 0.24 4.79 16 4 N -0.67 -20.47 5.04 -317.27 -1.60 -22.07 16 5 C 0.69 28.12 8.37 179.06 1.50 29.62 16 6 O -0.62 -30.33 13.42 -3.97 -0.05 -30.38 16 7 N -0.71 -29.38 5.07 -461.43 -2.34 -31.72 16 8 C 0.29 14.90 2.56 44.25 0.11 15.02 16 9 H 0.00 0.01 7.58 -2.39 -0.02 0.00 16 10 C -0.13 -6.76 9.26 71.98 0.67 -6.09 16 11 C -0.55 -28.62 8.73 25.60 0.22 -28.39 16 12 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 13 C 0.01 0.79 5.30 84.66 0.45 1.24 16 14 N -0.92 -52.30 11.32 21.45 0.24 -52.06 16 15 Si 0.97 41.78 29.54 68.60 2.03 43.80 16 16 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 17 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 18 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 19 C -0.12 -3.55 8.69 22.43 0.19 -3.36 16 20 C -0.11 -2.51 10.03 22.22 0.22 -2.28 16 21 C -0.09 -1.90 9.69 22.49 0.22 -1.68 16 22 C -0.02 -0.48 5.87 -20.06 -0.12 -0.60 16 23 C 0.22 4.76 7.79 137.38 1.07 5.83 16 24 N -0.29 -6.36 9.08 -52.17 -0.47 -6.83 16 25 N -0.06 -1.06 13.47 37.02 0.50 -0.56 16 26 N -0.20 -2.33 7.90 37.02 0.29 -2.03 16 27 H 0.49 0.63 8.96 -347.53 -3.12 -2.49 16 28 N -0.29 -5.05 12.08 -52.12 -0.63 -5.68 16 29 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.10 2.22 5.17 -2.39 -0.01 2.20 16 31 H 0.07 1.36 6.51 -2.39 -0.02 1.34 16 32 H 0.42 9.66 7.21 -92.71 -0.67 8.99 16 33 H 0.40 13.70 8.56 -92.71 -0.79 12.91 16 34 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.07 3.72 6.07 -2.39 -0.01 3.71 16 36 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.27 14.33 8.31 -92.70 -0.77 13.56 16 38 H 0.12 4.44 6.19 -2.91 -0.02 4.43 16 39 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 40 H 0.15 2.50 7.88 -2.91 -0.02 2.48 16 Total: -1.00 -72.07 338.32 -0.17 -72.23 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: -3.43 Total: 25.22 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 5.30 Total: 10.09 kcal Atomic # 7 Polarization: -116.95 SS G_CDS: -4.01 Total: -120.96 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -0.05 Total: -30.38 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Total: -72.07 -0.17 -72.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591826424.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.168 kcal (2) G-P(sol) polarization free energy of solvation -72.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds