Wall clock time and date at job start Tue Mar 31 2020 11:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38345 * 120.80628 * 2 1 4 4 C 1.39395 * 119.18488 * 179.97438 * 3 2 1 5 5 C 1.48037 * 119.59673 * 180.02562 * 4 3 2 6 6 O 1.21527 * 120.00360 * 352.64126 * 5 4 3 7 7 N 1.34781 * 119.99762 * 172.64174 * 5 4 3 8 8 C 1.46491 * 120.00173 * 1.39162 * 7 5 4 9 9 C 1.46500 * 119.99814 * 181.38901 * 7 5 4 10 10 H 1.09007 * 109.47065 * 359.97438 * 9 7 5 11 11 C 1.52998 * 109.47522 * 119.99989 * 9 7 5 12 12 C 1.50702 * 109.47144 * 240.00177 * 9 7 5 13 13 H 1.08002 * 120.00072 * 0.02562 * 12 9 7 14 14 C 1.37884 * 119.99912 * 179.97438 * 12 9 7 15 15 N 1.31515 * 119.99970 * 0.02562 * 14 12 9 16 16 Si 1.86795 * 119.99756 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.47384 * 90.00292 * 16 14 12 18 18 H 1.48505 * 109.47006 * 210.00184 * 16 14 12 19 19 H 1.48506 * 109.47415 * 330.00177 * 16 14 12 20 20 N 1.32822 * 120.80500 * 0.27177 * 4 3 2 21 21 C 1.31319 * 121.76218 * 359.43729 * 20 4 3 22 22 C 1.39697 * 120.80295 * 179.97438 * 2 1 3 23 23 C 1.48344 * 120.44432 * 0.04430 * 22 2 1 24 24 N 1.34093 * 126.67989 * 359.68244 * 23 22 2 25 25 N 1.28983 * 107.26127 * 179.87251 * 24 23 22 26 26 N 1.28726 * 108.96392 * 0.39910 * 25 24 23 27 27 H 0.96998 * 125.34137 * 179.76269 * 26 25 24 28 28 N 1.28871 * 109.32434 * 359.74785 * 26 25 24 29 29 H 1.09005 * 109.47049 * 90.00037 * 1 2 3 30 30 H 1.09002 * 109.47239 * 209.99521 * 1 2 3 31 31 H 1.08997 * 109.47549 * 329.99925 * 1 2 3 32 32 H 1.08005 * 120.40621 * 359.95683 * 3 2 1 33 33 H 1.09006 * 109.47346 * 83.89962 * 8 7 5 34 34 H 1.09002 * 109.47544 * 323.89891 * 8 7 5 35 35 H 1.09003 * 109.46996 * 203.89744 * 8 7 5 36 36 H 1.08997 * 109.47090 * 300.00543 * 11 9 7 37 37 H 1.08998 * 109.46389 * 59.99943 * 11 9 7 38 38 H 1.08996 * 109.47456 * 180.02562 * 11 9 7 39 39 H 0.96997 * 119.99947 * 179.97438 * 15 14 12 40 40 H 1.08011 * 119.63273 * 180.28997 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2155 1.1882 0.0000 4 6 3.6089 1.1488 0.0005 5 6 4.3762 2.4148 0.0011 6 8 3.7986 3.4755 -0.1337 7 7 5.7154 2.3911 0.1511 8 6 6.4151 1.1108 0.2830 9 6 6.4713 3.6456 0.1822 10 1 5.7859 4.4857 0.0700 11 6 7.2092 3.7636 1.5174 12 6 7.4699 3.6585 -0.9464 13 1 7.5347 2.8166 -1.6198 14 6 8.3002 4.7456 -1.1199 15 7 8.2209 5.7710 -0.3002 16 14 9.5374 4.7618 -2.5193 17 1 8.9123 5.3606 -3.7258 18 1 10.7212 5.5666 -2.1240 19 1 9.9625 3.3711 -2.8205 20 7 4.2566 -0.0108 -0.0044 21 6 3.6189 -1.1587 0.0011 22 6 2.2224 -1.1999 0.0005 23 6 1.5088 -2.5004 0.0001 24 7 0.1807 -2.6854 0.0052 25 7 -0.0285 -3.9581 0.0000 26 7 1.1049 -4.5684 0.0005 27 1 1.2238 -5.5310 0.0005 28 7 2.0569 -3.6998 0.0006 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6954 2.1348 -0.0007 33 1 6.6064 0.6975 -0.7073 34 1 5.7981 0.4165 0.8535 35 1 7.3616 1.2658 0.8011 36 1 6.4869 3.7542 2.3337 37 1 7.8946 2.9235 1.6290 38 1 7.7712 4.6972 1.5407 39 1 8.8052 6.5356 -0.4221 40 1 4.1803 -2.0815 0.0016 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591908345.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:21 Heat of formation + Delta-G solvation = 149.823914 kcal Electronic energy + Delta-G solvation = -25701.359670 eV Core-core repulsion = 21941.574777 eV Total energy + Delta-G solvation = -3759.784892 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.79974 -40.67368 -38.56234 -35.45724 -35.22609 -34.20563 -33.46600 -32.69748 -31.06875 -29.26437 -28.12493 -26.06802 -25.59795 -25.15771 -24.70786 -22.87424 -22.61713 -20.93772 -19.58091 -18.72586 -17.49482 -16.94079 -16.72584 -16.55758 -16.00624 -15.34230 -14.97220 -14.82675 -14.40210 -14.21126 -13.91612 -13.34766 -13.05280 -12.89046 -12.86030 -12.50729 -12.39879 -12.22400 -12.14232 -11.74437 -11.55906 -11.46622 -11.27301 -11.05358 -11.00813 -10.79150 -10.68532 -10.21773 -10.13565 -9.68686 -9.50889 -9.13196 -9.02841 -8.84128 -8.39872 -7.53119 -6.04175 -4.11636 0.16873 0.80825 1.11639 1.88449 1.92623 3.17695 3.29252 3.30391 3.36607 3.39385 3.74753 3.83560 4.03353 4.28363 4.43086 4.48684 4.78950 4.88302 4.98295 5.10144 5.24045 5.27774 5.40782 5.57366 5.68704 5.75838 5.95790 6.03264 6.18259 6.19994 6.36639 6.51488 6.69992 6.82625 6.90801 7.07939 7.43746 7.52050 7.71252 7.74922 7.79703 8.04065 8.21394 8.52735 8.82649 9.00766 9.54381 11.01250 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.026466 B = 0.002867 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.704829 B = 9764.503771 C =10219.120585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.003 4.003 3 C -0.122 4.122 4 C 0.119 3.881 5 C 0.547 3.453 6 O -0.545 6.545 7 N -0.564 5.564 8 C 0.086 3.914 9 C 0.254 3.746 10 H 0.064 0.936 11 C -0.147 4.147 12 C -0.523 4.523 13 H 0.060 0.940 14 C 0.064 3.936 15 N -0.889 5.889 16 Si 0.899 3.101 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 N -0.449 5.449 21 C 0.139 3.861 22 C -0.076 4.076 23 C 0.231 3.769 24 N -0.266 5.266 25 N -0.052 5.052 26 N -0.225 5.225 27 H 0.476 0.524 28 N -0.291 5.291 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.156 0.844 33 H 0.048 0.952 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.012 0.988 37 H 0.032 0.968 38 H 0.095 0.905 39 H 0.263 0.737 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.358 -20.477 2.633 24.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.012 4.012 3 C -0.143 4.143 4 C -0.019 4.019 5 C 0.331 3.669 6 O -0.424 6.424 7 N -0.292 5.292 8 C -0.057 4.057 9 C 0.154 3.846 10 H 0.082 0.918 11 C -0.205 4.205 12 C -0.562 4.562 13 H 0.079 0.921 14 C -0.138 4.138 15 N -0.527 5.527 16 Si 0.727 3.273 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.199 1.199 20 N -0.161 5.161 21 C -0.023 4.023 22 C -0.081 4.081 23 C -0.049 4.049 24 N -0.139 5.139 25 N -0.047 5.047 26 N -0.071 5.071 27 H 0.330 0.670 28 N -0.142 5.142 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.093 0.907 32 H 0.174 0.826 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.031 0.969 37 H 0.051 0.949 38 H 0.113 0.887 39 H 0.073 0.927 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -13.137 -20.062 2.600 24.121 hybrid contribution 0.432 -0.505 -0.842 1.073 sum -12.705 -20.567 1.758 24.239 Atomic orbital electron populations 1.21202 0.88790 1.04826 1.03845 1.20352 0.97578 0.90843 0.92472 1.22006 0.93763 0.99228 0.99263 1.21890 0.91931 0.92990 0.95044 1.17801 0.83016 0.86569 0.79493 1.90751 1.69465 1.30233 1.51920 1.48220 1.05088 1.09980 1.65891 1.22085 0.97266 0.84819 1.01550 1.19065 0.90763 0.80691 0.94045 0.91778 1.22096 0.99288 1.03330 0.95809 1.21317 1.18595 1.03604 1.12658 0.92135 1.24888 0.97271 0.95229 0.96402 1.69878 1.39119 1.06797 1.36920 0.86479 0.80554 0.78046 0.82220 1.20629 1.21146 1.19878 1.68455 1.38217 0.97562 1.11881 1.23072 0.89556 0.97133 0.92566 1.18344 0.93863 0.87172 1.08760 1.23419 0.87935 0.92253 1.01290 1.76146 1.14309 1.05242 1.18194 1.78934 1.10279 1.00988 1.14457 1.47715 1.01194 1.12362 1.45835 0.66969 1.74964 1.18296 0.98973 1.22016 0.89984 0.88122 0.90712 0.82638 0.93291 0.89504 0.92019 0.96909 0.94885 0.88679 0.92700 0.81407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 9.28 36.01 0.33 -0.92 16 2 C 0.00 -0.03 5.94 -104.04 -0.62 -0.65 16 3 C -0.12 -1.75 9.32 -39.11 -0.36 -2.11 16 4 C 0.12 2.03 6.61 -82.99 -0.55 1.48 16 5 C 0.55 11.85 7.66 -12.24 -0.09 11.75 16 6 O -0.54 -13.41 15.66 5.34 0.08 -13.33 16 7 N -0.56 -12.63 2.75 -176.30 -0.49 -13.12 16 8 C 0.09 1.61 8.47 59.84 0.51 2.11 16 9 C 0.25 6.61 2.63 -69.08 -0.18 6.43 16 10 H 0.06 1.91 6.90 -51.92 -0.36 1.55 16 11 C -0.15 -3.56 8.96 37.16 0.33 -3.22 16 12 C -0.52 -14.41 8.37 -34.44 -0.29 -14.69 16 13 H 0.06 1.66 7.65 -52.49 -0.40 1.26 16 14 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 15 N -0.89 -25.29 11.32 55.43 0.63 -24.66 16 16 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 N -0.45 -6.80 6.03 -9.55 -0.06 -6.85 16 21 C 0.14 1.68 10.86 -17.22 -0.19 1.50 16 22 C -0.08 -0.89 5.90 -104.64 -0.62 -1.51 16 23 C 0.23 2.47 7.82 -156.27 -1.22 1.25 16 24 N -0.27 -2.81 9.22 32.14 0.30 -2.52 16 25 N -0.05 -0.45 13.47 60.35 0.81 0.36 16 26 N -0.23 -1.39 7.90 60.35 0.48 -0.91 16 27 H 0.48 0.61 8.96 -340.36 -3.05 -2.44 16 28 N -0.29 -2.58 12.10 32.16 0.39 -2.19 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 0.99 5.28 -51.93 -0.27 0.71 16 31 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 32 H 0.16 2.17 7.65 -52.48 -0.40 1.77 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.09 1.43 5.32 -51.95 -0.28 1.15 16 35 H 0.06 1.15 6.44 -51.93 -0.33 0.82 16 36 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.03 0.74 6.67 -51.93 -0.35 0.39 16 38 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.17 1.62 7.89 -52.48 -0.41 1.21 16 LS Contribution 336.09 15.07 5.06 5.06 Total: -1.00 -33.19 336.09 -7.85 -41.04 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -7.00 Total: -2.28 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -3.04 Total: 3.10 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: 2.06 Total: -49.89 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.08 Total: -13.33 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.19 -7.85 -41.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591908345.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.863 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds