Wall clock time and date at job start Tue Mar 31 2020 11:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38345 * 120.80628 * 2 1 4 4 C 1.39395 * 119.18488 * 179.97438 * 3 2 1 5 5 C 1.48037 * 119.59673 * 180.02562 * 4 3 2 6 6 O 1.21527 * 120.00360 * 352.64126 * 5 4 3 7 7 N 1.34781 * 119.99762 * 172.64174 * 5 4 3 8 8 C 1.46491 * 120.00173 * 1.39162 * 7 5 4 9 9 C 1.46500 * 119.99814 * 181.38901 * 7 5 4 10 10 H 1.09007 * 109.47065 * 359.97438 * 9 7 5 11 11 C 1.52998 * 109.47522 * 119.99989 * 9 7 5 12 12 C 1.50702 * 109.47144 * 240.00177 * 9 7 5 13 13 H 1.08002 * 120.00072 * 0.02562 * 12 9 7 14 14 C 1.37884 * 119.99912 * 179.97438 * 12 9 7 15 15 N 1.31515 * 119.99970 * 0.02562 * 14 12 9 16 16 Si 1.86795 * 119.99756 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.47384 * 90.00292 * 16 14 12 18 18 H 1.48505 * 109.47006 * 210.00184 * 16 14 12 19 19 H 1.48506 * 109.47415 * 330.00177 * 16 14 12 20 20 N 1.32822 * 120.80500 * 0.27177 * 4 3 2 21 21 C 1.31319 * 121.76218 * 359.43729 * 20 4 3 22 22 C 1.39697 * 120.80295 * 179.97438 * 2 1 3 23 23 C 1.48344 * 120.44432 * 0.04430 * 22 2 1 24 24 N 1.34093 * 126.67989 * 359.68244 * 23 22 2 25 25 N 1.28983 * 107.26127 * 179.87251 * 24 23 22 26 26 N 1.28726 * 108.96392 * 0.39910 * 25 24 23 27 27 H 0.96998 * 125.34137 * 179.76269 * 26 25 24 28 28 N 1.28871 * 109.32434 * 359.74785 * 26 25 24 29 29 H 1.09005 * 109.47049 * 90.00037 * 1 2 3 30 30 H 1.09002 * 109.47239 * 209.99521 * 1 2 3 31 31 H 1.08997 * 109.47549 * 329.99925 * 1 2 3 32 32 H 1.08005 * 120.40621 * 359.95683 * 3 2 1 33 33 H 1.09006 * 109.47346 * 83.89962 * 8 7 5 34 34 H 1.09002 * 109.47544 * 323.89891 * 8 7 5 35 35 H 1.09003 * 109.46996 * 203.89744 * 8 7 5 36 36 H 1.08997 * 109.47090 * 300.00543 * 11 9 7 37 37 H 1.08998 * 109.46389 * 59.99943 * 11 9 7 38 38 H 1.08996 * 109.47456 * 180.02562 * 11 9 7 39 39 H 0.96997 * 119.99947 * 179.97438 * 15 14 12 40 40 H 1.08011 * 119.63273 * 180.28997 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2155 1.1882 0.0000 4 6 3.6089 1.1488 0.0005 5 6 4.3762 2.4148 0.0011 6 8 3.7986 3.4755 -0.1337 7 7 5.7154 2.3911 0.1511 8 6 6.4151 1.1108 0.2830 9 6 6.4713 3.6456 0.1822 10 1 5.7859 4.4857 0.0700 11 6 7.2092 3.7636 1.5174 12 6 7.4699 3.6585 -0.9464 13 1 7.5347 2.8166 -1.6198 14 6 8.3002 4.7456 -1.1199 15 7 8.2209 5.7710 -0.3002 16 14 9.5374 4.7618 -2.5193 17 1 8.9123 5.3606 -3.7258 18 1 10.7212 5.5666 -2.1240 19 1 9.9625 3.3711 -2.8205 20 7 4.2566 -0.0108 -0.0044 21 6 3.6189 -1.1587 0.0011 22 6 2.2224 -1.1999 0.0005 23 6 1.5088 -2.5004 0.0001 24 7 0.1807 -2.6854 0.0052 25 7 -0.0285 -3.9581 0.0000 26 7 1.1049 -4.5684 0.0005 27 1 1.2238 -5.5310 0.0005 28 7 2.0569 -3.6998 0.0006 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6954 2.1348 -0.0007 33 1 6.6064 0.6975 -0.7073 34 1 5.7981 0.4165 0.8535 35 1 7.3616 1.2658 0.8011 36 1 6.4869 3.7542 2.3337 37 1 7.8946 2.9235 1.6290 38 1 7.7712 4.6972 1.5407 39 1 8.8052 6.5356 -0.4221 40 1 4.1803 -2.0815 0.0016 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591908345.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:20 Heat of formation + Delta-G solvation = 127.497123 kcal Electronic energy + Delta-G solvation = -25702.327832 eV Core-core repulsion = 21941.574777 eV Total energy + Delta-G solvation = -3760.753055 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.50011 -41.89170 -40.12914 -37.25222 -36.19650 -35.07753 -34.63116 -34.29013 -32.25847 -31.05341 -29.06027 -27.59859 -27.30119 -26.65071 -25.50906 -24.07950 -23.56716 -22.45911 -20.53599 -20.10388 -18.50665 -18.22414 -18.17974 -17.76396 -17.47744 -16.97470 -16.50686 -16.27638 -15.68135 -15.28288 -15.08974 -14.82846 -14.43506 -14.09231 -14.02858 -13.91149 -13.73693 -13.45563 -13.33375 -12.95698 -12.91135 -12.79156 -12.69129 -12.60422 -12.43290 -12.22037 -12.17592 -12.09754 -11.81815 -11.23871 -11.14884 -10.58422 -10.52602 -10.22844 -10.02885 -9.32318 -8.14133 -6.30552 -0.87796 0.07505 0.13826 0.99565 1.38864 1.42242 1.43393 1.53818 1.84109 2.16790 2.43773 2.53155 2.73439 3.02729 3.10883 3.13665 3.57952 3.59218 3.87803 4.00795 4.15759 4.39367 4.51374 4.60087 4.68198 4.73738 4.82789 4.83668 4.89293 4.93055 5.06359 5.10130 5.22520 5.37865 5.45086 5.52622 5.61047 5.62977 5.68521 6.01259 6.15579 6.55584 6.74910 6.78236 7.08719 7.22057 7.42511 8.90406 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.026466 B = 0.002867 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.704829 B = 9764.503771 C =10219.120585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.003 3.997 3 C -0.119 4.119 4 C 0.095 3.905 5 C 0.540 3.460 6 O -0.589 6.589 7 N -0.575 5.575 8 C 0.092 3.908 9 C 0.258 3.742 10 H 0.015 0.985 11 C -0.132 4.132 12 C -0.539 4.539 13 H 0.057 0.943 14 C 0.017 3.983 15 N -0.916 5.916 16 Si 0.965 3.035 17 H -0.281 1.281 18 H -0.277 1.277 19 H -0.263 1.263 20 N -0.461 5.461 21 C 0.144 3.856 22 C -0.060 4.060 23 C 0.215 3.785 24 N -0.280 5.280 25 N -0.055 5.055 26 N -0.195 5.195 27 H 0.496 0.504 28 N -0.284 5.284 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.152 0.848 33 H 0.049 0.951 34 H 0.112 0.888 35 H 0.059 0.941 36 H 0.022 0.978 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.266 0.734 40 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.813 -23.865 2.280 27.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.007 4.007 3 C -0.140 4.140 4 C -0.042 4.042 5 C 0.327 3.673 6 O -0.471 6.471 7 N -0.303 5.303 8 C -0.050 4.050 9 C 0.156 3.844 10 H 0.033 0.967 11 C -0.191 4.191 12 C -0.578 4.578 13 H 0.075 0.925 14 C -0.183 4.183 15 N -0.555 5.555 16 Si 0.790 3.210 17 H -0.207 1.207 18 H -0.203 1.203 19 H -0.188 1.188 20 N -0.173 5.173 21 C -0.018 4.018 22 C -0.066 4.066 23 C -0.065 4.065 24 N -0.152 5.152 25 N -0.049 5.049 26 N -0.046 5.046 27 H 0.356 0.644 28 N -0.136 5.136 29 H 0.109 0.891 30 H 0.122 0.878 31 H 0.104 0.896 32 H 0.170 0.830 33 H 0.067 0.933 34 H 0.130 0.870 35 H 0.077 0.923 36 H 0.041 0.959 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -13.599 -23.505 2.257 27.249 hybrid contribution 0.428 0.339 -0.727 0.909 sum -13.171 -23.166 1.530 26.693 Atomic orbital electron populations 1.21253 0.86875 1.05558 1.04591 1.20552 0.98768 0.90007 0.91332 1.21978 0.92752 1.00185 0.99091 1.21157 0.92219 0.91694 0.99104 1.18476 0.82819 0.87956 0.78072 1.90703 1.70248 1.32474 1.53643 1.48214 1.05670 1.09955 1.66413 1.22222 0.97296 0.83499 1.01974 1.18692 0.89800 0.81190 0.94680 0.96739 1.21885 0.99263 1.02662 0.95282 1.21537 1.19165 1.03811 1.13261 0.92459 1.25719 0.99057 0.94743 0.98777 1.70011 1.39844 1.07281 1.38348 0.85448 0.78200 0.78516 0.78814 1.20740 1.20269 1.18769 1.68221 1.38824 0.97704 1.12505 1.23448 0.90050 0.96810 0.91537 1.18441 0.93846 0.87798 1.06508 1.23179 0.88152 0.92205 1.03001 1.76135 1.14277 1.06120 1.18678 1.78908 1.10783 1.00539 1.14687 1.47794 1.00149 1.13219 1.43431 0.64448 1.74924 1.18727 0.98704 1.21291 0.89058 0.87818 0.89552 0.82993 0.93253 0.86991 0.92264 0.95927 0.93360 0.90972 0.92516 0.78541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 9.28 71.24 0.66 -1.51 16 2 C 0.00 0.07 5.94 -19.49 -0.12 -0.04 16 3 C -0.12 -3.40 9.32 22.57 0.21 -3.19 16 4 C 0.09 3.24 6.61 41.87 0.28 3.52 16 5 C 0.54 24.38 7.66 86.84 0.66 25.05 16 6 O -0.59 -30.83 15.66 -3.80 -0.06 -30.89 16 7 N -0.57 -26.58 2.75 -829.99 -2.28 -28.86 16 8 C 0.09 3.41 8.47 127.77 1.08 4.50 16 9 C 0.26 14.01 2.63 44.25 0.12 14.12 16 10 H 0.01 0.93 6.90 -2.38 -0.02 0.91 16 11 C -0.13 -6.60 8.96 71.98 0.64 -5.96 16 12 C -0.54 -30.46 8.37 25.60 0.21 -30.24 16 13 H 0.06 3.19 7.65 -2.91 -0.02 3.17 16 14 C 0.02 0.94 5.30 84.66 0.45 1.38 16 15 N -0.92 -53.50 11.32 21.45 0.24 -53.25 16 16 Si 0.97 43.99 29.54 68.60 2.03 46.01 16 17 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 18 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 19 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 20 N -0.46 -13.40 6.03 -184.11 -1.11 -14.51 16 21 C 0.14 3.14 10.86 85.13 0.92 4.07 16 22 C -0.06 -1.27 5.90 -19.88 -0.12 -1.39 16 23 C 0.21 3.94 7.82 137.31 1.07 5.01 16 24 N -0.28 -5.12 9.22 -52.22 -0.48 -5.60 16 25 N -0.05 -0.78 13.47 37.02 0.50 -0.28 16 26 N -0.19 -1.70 7.90 37.02 0.29 -1.41 16 27 H 0.50 -0.64 8.96 -347.53 -3.12 -3.75 16 28 N -0.28 -4.02 12.10 -52.16 -0.63 -4.65 16 29 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.10 1.79 5.28 -2.39 -0.01 1.78 16 31 H 0.09 1.29 8.10 -2.39 -0.02 1.27 16 32 H 0.15 4.37 7.65 -2.91 -0.02 4.35 16 33 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.11 3.57 5.32 -2.44 -0.01 3.56 16 35 H 0.06 2.18 6.44 -2.39 -0.02 2.17 16 36 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.05 2.20 6.67 -2.39 -0.02 2.18 16 38 H 0.07 3.93 6.07 -2.39 -0.01 3.92 16 39 H 0.27 14.63 8.31 -92.71 -0.77 13.85 16 40 H 0.20 3.09 7.89 -2.91 -0.02 3.06 16 Total: -1.00 -74.36 336.09 2.58 -71.78 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -2.00 Total: 6.33 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 6.09 Total: 15.32 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -3.47 Total: -108.55 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -0.06 Total: -30.89 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -74.36 2.58 -71.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591908345.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.279 kcal (2) G-P(sol) polarization free energy of solvation -74.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds