Wall clock time and date at job start Tue Mar 31 2020 11:01:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.38345 * 120.80628 * 2 1
4 4 C 1.39395 * 119.18488 * 179.97438 * 3 2 1
5 5 C 1.48037 * 119.59673 * 180.02562 * 4 3 2
6 6 O 1.21527 * 120.00360 * 352.64126 * 5 4 3
7 7 N 1.34781 * 119.99762 * 172.64174 * 5 4 3
8 8 C 1.46491 * 120.00173 * 1.39162 * 7 5 4
9 9 C 1.46500 * 119.99814 * 181.38901 * 7 5 4
10 10 H 1.09007 * 109.47065 * 359.97438 * 9 7 5
11 11 C 1.52998 * 109.47522 * 119.99989 * 9 7 5
12 12 C 1.50702 * 109.47144 * 240.00177 * 9 7 5
13 13 H 1.08002 * 120.00072 * 0.02562 * 12 9 7
14 14 C 1.37884 * 119.99912 * 179.97438 * 12 9 7
15 15 N 1.31515 * 119.99970 * 0.02562 * 14 12 9
16 16 Si 1.86795 * 119.99756 * 180.02562 * 14 12 9
17 17 H 1.48497 * 109.47384 * 90.00292 * 16 14 12
18 18 H 1.48505 * 109.47006 * 210.00184 * 16 14 12
19 19 H 1.48506 * 109.47415 * 330.00177 * 16 14 12
20 20 N 1.32822 * 120.80500 * 0.27177 * 4 3 2
21 21 C 1.31319 * 121.76218 * 359.43729 * 20 4 3
22 22 C 1.39697 * 120.80295 * 179.97438 * 2 1 3
23 23 C 1.48344 * 120.44432 * 0.04430 * 22 2 1
24 24 N 1.34093 * 126.67989 * 359.68244 * 23 22 2
25 25 N 1.28983 * 107.26127 * 179.87251 * 24 23 22
26 26 N 1.28726 * 108.96392 * 0.39910 * 25 24 23
27 27 H 0.96998 * 125.34137 * 179.76269 * 26 25 24
28 28 N 1.28871 * 109.32434 * 359.74785 * 26 25 24
29 29 H 1.09005 * 109.47049 * 90.00037 * 1 2 3
30 30 H 1.09002 * 109.47239 * 209.99521 * 1 2 3
31 31 H 1.08997 * 109.47549 * 329.99925 * 1 2 3
32 32 H 1.08005 * 120.40621 * 359.95683 * 3 2 1
33 33 H 1.09006 * 109.47346 * 83.89962 * 8 7 5
34 34 H 1.09002 * 109.47544 * 323.89891 * 8 7 5
35 35 H 1.09003 * 109.46996 * 203.89744 * 8 7 5
36 36 H 1.08997 * 109.47090 * 300.00543 * 11 9 7
37 37 H 1.08998 * 109.46389 * 59.99943 * 11 9 7
38 38 H 1.08996 * 109.47456 * 180.02562 * 11 9 7
39 39 H 0.96997 * 119.99947 * 179.97438 * 15 14 12
40 40 H 1.08011 * 119.63273 * 180.28997 * 21 20 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2155 1.1882 0.0000
4 6 3.6089 1.1488 0.0005
5 6 4.3762 2.4148 0.0011
6 8 3.7986 3.4755 -0.1337
7 7 5.7154 2.3911 0.1511
8 6 6.4151 1.1108 0.2830
9 6 6.4713 3.6456 0.1822
10 1 5.7859 4.4857 0.0700
11 6 7.2092 3.7636 1.5174
12 6 7.4699 3.6585 -0.9464
13 1 7.5347 2.8166 -1.6198
14 6 8.3002 4.7456 -1.1199
15 7 8.2209 5.7710 -0.3002
16 14 9.5374 4.7618 -2.5193
17 1 8.9123 5.3606 -3.7258
18 1 10.7212 5.5666 -2.1240
19 1 9.9625 3.3711 -2.8205
20 7 4.2566 -0.0108 -0.0044
21 6 3.6189 -1.1587 0.0011
22 6 2.2224 -1.1999 0.0005
23 6 1.5088 -2.5004 0.0001
24 7 0.1807 -2.6854 0.0052
25 7 -0.0285 -3.9581 0.0000
26 7 1.1049 -4.5684 0.0005
27 1 1.2238 -5.5310 0.0005
28 7 2.0569 -3.6998 0.0006
29 1 -0.3633 0.0000 -1.0277
30 1 -0.3634 -0.8900 0.5138
31 1 -0.3634 0.8899 0.5138
32 1 1.6954 2.1348 -0.0007
33 1 6.6064 0.6975 -0.7073
34 1 5.7981 0.4165 0.8535
35 1 7.3616 1.2658 0.8011
36 1 6.4869 3.7542 2.3337
37 1 7.8946 2.9235 1.6290
38 1 7.7712 4.6972 1.5407
39 1 8.8052 6.5356 -0.4221
40 1 4.1803 -2.0815 0.0016
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001591908345.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:01:20
Heat of formation + Delta-G solvation = 127.497123 kcal
Electronic energy + Delta-G solvation = -25702.327832 eV
Core-core repulsion = 21941.574777 eV
Total energy + Delta-G solvation = -3760.753055 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.139 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-45.50011 -41.89170 -40.12914 -37.25222 -36.19650 -35.07753 -34.63116 -34.29013
-32.25847 -31.05341 -29.06027 -27.59859 -27.30119 -26.65071 -25.50906 -24.07950
-23.56716 -22.45911 -20.53599 -20.10388 -18.50665 -18.22414 -18.17974 -17.76396
-17.47744 -16.97470 -16.50686 -16.27638 -15.68135 -15.28288 -15.08974 -14.82846
-14.43506 -14.09231 -14.02858 -13.91149 -13.73693 -13.45563 -13.33375 -12.95698
-12.91135 -12.79156 -12.69129 -12.60422 -12.43290 -12.22037 -12.17592 -12.09754
-11.81815 -11.23871 -11.14884 -10.58422 -10.52602 -10.22844 -10.02885 -9.32318
-8.14133 -6.30552 -0.87796 0.07505 0.13826 0.99565 1.38864 1.42242
1.43393 1.53818 1.84109 2.16790 2.43773 2.53155 2.73439 3.02729
3.10883 3.13665 3.57952 3.59218 3.87803 4.00795 4.15759 4.39367
4.51374 4.60087 4.68198 4.73738 4.82789 4.83668 4.89293 4.93055
5.06359 5.10130 5.22520 5.37865 5.45086 5.52622 5.61047 5.62977
5.68521 6.01259 6.15579 6.55584 6.74910 6.78236 7.08719 7.22057
7.42511 8.90406
Molecular weight = 316.14amu
Principal moments of inertia in cm(-1)
A = 0.026466 B = 0.002867 C = 0.002739
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1057.704829 B = 9764.503771 C =10219.120585
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C 0.003 3.997
3 C -0.119 4.119
4 C 0.095 3.905
5 C 0.540 3.460
6 O -0.589 6.589
7 N -0.575 5.575
8 C 0.092 3.908
9 C 0.258 3.742
10 H 0.015 0.985
11 C -0.132 4.132
12 C -0.539 4.539
13 H 0.057 0.943
14 C 0.017 3.983
15 N -0.916 5.916
16 Si 0.965 3.035
17 H -0.281 1.281
18 H -0.277 1.277
19 H -0.263 1.263
20 N -0.461 5.461
21 C 0.144 3.856
22 C -0.060 4.060
23 C 0.215 3.785
24 N -0.280 5.280
25 N -0.055 5.055
26 N -0.195 5.195
27 H 0.496 0.504
28 N -0.284 5.284
29 H 0.091 0.909
30 H 0.104 0.896
31 H 0.086 0.914
32 H 0.152 0.848
33 H 0.049 0.951
34 H 0.112 0.888
35 H 0.059 0.941
36 H 0.022 0.978
37 H 0.047 0.953
38 H 0.072 0.928
39 H 0.266 0.734
40 H 0.198 0.802
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.813 -23.865 2.280 27.669
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.007 4.007
3 C -0.140 4.140
4 C -0.042 4.042
5 C 0.327 3.673
6 O -0.471 6.471
7 N -0.303 5.303
8 C -0.050 4.050
9 C 0.156 3.844
10 H 0.033 0.967
11 C -0.191 4.191
12 C -0.578 4.578
13 H 0.075 0.925
14 C -0.183 4.183
15 N -0.555 5.555
16 Si 0.790 3.210
17 H -0.207 1.207
18 H -0.203 1.203
19 H -0.188 1.188
20 N -0.173 5.173
21 C -0.018 4.018
22 C -0.066 4.066
23 C -0.065 4.065
24 N -0.152 5.152
25 N -0.049 5.049
26 N -0.046 5.046
27 H 0.356 0.644
28 N -0.136 5.136
29 H 0.109 0.891
30 H 0.122 0.878
31 H 0.104 0.896
32 H 0.170 0.830
33 H 0.067 0.933
34 H 0.130 0.870
35 H 0.077 0.923
36 H 0.041 0.959
37 H 0.066 0.934
38 H 0.090 0.910
39 H 0.075 0.925
40 H 0.215 0.785
Dipole moment (debyes) X Y Z Total
from point charges -13.599 -23.505 2.257 27.249
hybrid contribution 0.428 0.339 -0.727 0.909
sum -13.171 -23.166 1.530 26.693
Atomic orbital electron populations
1.21253 0.86875 1.05558 1.04591 1.20552 0.98768 0.90007 0.91332
1.21978 0.92752 1.00185 0.99091 1.21157 0.92219 0.91694 0.99104
1.18476 0.82819 0.87956 0.78072 1.90703 1.70248 1.32474 1.53643
1.48214 1.05670 1.09955 1.66413 1.22222 0.97296 0.83499 1.01974
1.18692 0.89800 0.81190 0.94680 0.96739 1.21885 0.99263 1.02662
0.95282 1.21537 1.19165 1.03811 1.13261 0.92459 1.25719 0.99057
0.94743 0.98777 1.70011 1.39844 1.07281 1.38348 0.85448 0.78200
0.78516 0.78814 1.20740 1.20269 1.18769 1.68221 1.38824 0.97704
1.12505 1.23448 0.90050 0.96810 0.91537 1.18441 0.93846 0.87798
1.06508 1.23179 0.88152 0.92205 1.03001 1.76135 1.14277 1.06120
1.18678 1.78908 1.10783 1.00539 1.14687 1.47794 1.00149 1.13219
1.43431 0.64448 1.74924 1.18727 0.98704 1.21291 0.89058 0.87818
0.89552 0.82993 0.93253 0.86991 0.92264 0.95927 0.93360 0.90972
0.92516 0.78541
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.17 9.28 71.24 0.66 -1.51 16
2 C 0.00 0.07 5.94 -19.49 -0.12 -0.04 16
3 C -0.12 -3.40 9.32 22.57 0.21 -3.19 16
4 C 0.09 3.24 6.61 41.87 0.28 3.52 16
5 C 0.54 24.38 7.66 86.84 0.66 25.05 16
6 O -0.59 -30.83 15.66 -3.80 -0.06 -30.89 16
7 N -0.57 -26.58 2.75 -829.99 -2.28 -28.86 16
8 C 0.09 3.41 8.47 127.77 1.08 4.50 16
9 C 0.26 14.01 2.63 44.25 0.12 14.12 16
10 H 0.01 0.93 6.90 -2.38 -0.02 0.91 16
11 C -0.13 -6.60 8.96 71.98 0.64 -5.96 16
12 C -0.54 -30.46 8.37 25.60 0.21 -30.24 16
13 H 0.06 3.19 7.65 -2.91 -0.02 3.17 16
14 C 0.02 0.94 5.30 84.66 0.45 1.38 16
15 N -0.92 -53.50 11.32 21.45 0.24 -53.25 16
16 Si 0.97 43.99 29.54 68.60 2.03 46.01 16
17 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16
18 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16
19 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16
20 N -0.46 -13.40 6.03 -184.11 -1.11 -14.51 16
21 C 0.14 3.14 10.86 85.13 0.92 4.07 16
22 C -0.06 -1.27 5.90 -19.88 -0.12 -1.39 16
23 C 0.21 3.94 7.82 137.31 1.07 5.01 16
24 N -0.28 -5.12 9.22 -52.22 -0.48 -5.60 16
25 N -0.05 -0.78 13.47 37.02 0.50 -0.28 16
26 N -0.19 -1.70 7.90 37.02 0.29 -1.41 16
27 H 0.50 -0.64 8.96 -347.53 -3.12 -3.75 16
28 N -0.28 -4.02 12.10 -52.16 -0.63 -4.65 16
29 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16
30 H 0.10 1.79 5.28 -2.39 -0.01 1.78 16
31 H 0.09 1.29 8.10 -2.39 -0.02 1.27 16
32 H 0.15 4.37 7.65 -2.91 -0.02 4.35 16
33 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16
34 H 0.11 3.57 5.32 -2.44 -0.01 3.56 16
35 H 0.06 2.18 6.44 -2.39 -0.02 2.17 16
36 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16
37 H 0.05 2.20 6.67 -2.39 -0.02 2.18 16
38 H 0.07 3.93 6.07 -2.39 -0.01 3.92 16
39 H 0.27 14.63 8.31 -92.71 -0.77 13.85 16
40 H 0.20 3.09 7.89 -2.91 -0.02 3.06 16
Total: -1.00 -74.36 336.09 2.58 -71.78
By element:
Atomic # 1 Polarization: 8.33 SS G_CDS: -2.00 Total: 6.33 kcal
Atomic # 6 Polarization: 9.23 SS G_CDS: 6.09 Total: 15.32 kcal
Atomic # 7 Polarization: -105.08 SS G_CDS: -3.47 Total: -108.55 kcal
Atomic # 8 Polarization: -30.83 SS G_CDS: -0.06 Total: -30.89 kcal
Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal
Total: -74.36 2.58 -71.78 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001591908345.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 199.279 kcal
(2) G-P(sol) polarization free energy of solvation -74.363 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.916 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.581 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.782 kcal
(6) G-S(sol) free energy of system = (1) + (5) 127.497 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds