Wall clock time and date at job start Tue Mar 31 2020 10:54:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 C 1.37957 * 119.44951 * 2 1
4 4 C 1.39315 * 119.18531 * 180.02562 * 3 2 1
5 5 N 1.38983 * 120.92114 * 179.97438 * 4 3 2
6 6 C 1.48543 * 110.99892 * 306.73975 * 5 4 3
7 7 C 1.54931 * 103.22559 * 159.71913 * 6 5 4
8 8 C 1.54594 * 102.92665 * 322.58956 * 7 6 5
9 9 O 1.42897 * 110.30929 * 263.04403 * 8 7 6
10 10 C 1.50701 * 110.39571 * 140.91303 * 8 7 6
11 11 H 1.07996 * 120.00268 * 244.61482 * 10 8 7
12 12 C 1.37879 * 119.99764 * 64.62009 * 10 8 7
13 13 N 1.31512 * 119.99830 * 352.27348 * 12 10 8
14 14 Si 1.86796 * 120.00075 * 172.28212 * 12 10 8
15 15 H 1.48498 * 109.47351 * 94.98188 * 14 12 10
16 16 H 1.48495 * 109.47067 * 214.98847 * 14 12 10
17 17 H 1.48505 * 109.46785 * 334.98672 * 14 12 10
18 18 C 1.47894 * 111.00167 * 64.13637 * 5 4 3
19 19 C 1.40518 * 118.16114 * 0.25202 * 4 3 2
20 20 C 1.48380 * 120.58330 * 179.72532 * 19 4 3
21 21 N 1.34066 * 126.68164 * 4.99281 * 20 19 4
22 22 N 1.28982 * 107.26787 * 179.86842 * 21 20 19
23 23 N 1.28732 * 108.95101 * 0.40608 * 22 21 20
24 24 H 0.96997 * 125.33540 * 179.71168 * 23 22 21
25 25 N 1.28869 * 109.32266 * 359.73964 * 23 22 21
26 26 C 1.39017 * 118.83131 * 359.50148 * 19 4 3
27 27 N 1.31858 * 120.67943 * 0.51008 * 26 19 4
28 28 H 1.09009 * 109.46727 * 89.99942 * 1 2 3
29 29 H 1.09000 * 109.47418 * 209.99939 * 1 2 3
30 30 H 1.08999 * 109.47295 * 330.00644 * 1 2 3
31 31 H 1.07998 * 120.40709 * 359.97438 * 3 2 1
32 32 H 1.08999 * 110.66575 * 278.15908 * 6 5 4
33 33 H 1.09003 * 110.66218 * 41.28498 * 6 5 4
34 34 H 1.09000 * 110.72697 * 204.22829 * 7 6 5
35 35 H 1.09001 * 110.87430 * 81.01884 * 7 6 5
36 36 H 0.96705 * 113.99938 * 295.71020 * 9 8 7
37 37 H 0.97000 * 119.99929 * 180.02562 * 13 12 10
38 38 H 1.08999 * 109.91849 * 333.51281 * 18 5 4
39 39 H 1.08997 * 109.91532 * 94.80491 * 18 5 4
40 40 H 1.08004 * 119.66161 * 180.25146 * 26 19 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1852 1.2013 0.0000
4 6 3.5784 1.1949 -0.0005
5 7 4.2980 2.3839 -0.0011
6 6 3.8635 3.2686 -1.1124
7 6 4.3451 4.6696 -0.6591
8 6 4.0995 4.6427 0.8669
9 8 2.8531 5.2675 1.1798
10 6 5.2261 5.3324 1.5924
11 1 5.8652 4.7698 2.2566
12 6 5.4407 6.6819 1.4081
13 7 4.7645 7.3358 0.4891
14 14 6.6922 7.5812 2.4637
15 1 7.9931 7.6373 1.7497
16 1 6.2140 8.9615 2.7305
17 1 6.8645 6.8596 3.7501
18 6 4.0577 3.1495 1.2412
19 6 4.2358 -0.0470 -0.0065
20 6 5.7180 -0.1165 -0.0135
21 7 6.5686 0.9157 0.0786
22 7 7.7635 0.4319 0.0374
23 7 7.6925 -0.8477 -0.0842
24 1 8.4517 -1.4487 -0.1421
25 7 6.4548 -1.2049 -0.1174
26 6 3.4732 -1.2093 -0.0010
27 7 2.1560 -1.1497 -0.0005
28 1 -0.3633 0.0000 -1.0278
29 1 -0.3634 -0.8900 0.5138
30 1 -0.3634 0.8900 0.5137
31 1 1.6429 2.1352 -0.0004
32 1 4.3464 2.9791 -2.0458
33 1 2.7787 3.2499 -1.2173
34 1 3.7521 5.4528 -1.1315
35 1 5.4044 4.8055 -0.8770
36 1 2.8207 6.2099 0.9654
37 1 4.9157 8.2851 0.3592
38 1 3.0795 2.8964 1.6500
39 1 4.8366 2.9276 1.9707
40 1 3.9647 -2.1710 -0.0014
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001592002095.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:54:40
Heat of formation + Delta-G solvation = 128.319857 kcal
Electronic energy + Delta-G solvation = -26828.010971 eV
Core-core repulsion = 23067.293592 eV
Total energy + Delta-G solvation = -3760.717378 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.139 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-44.16693 -40.55197 -38.28110 -35.29168 -34.28601 -33.71752 -32.08725 -31.99417
-31.54976 -28.50665 -28.12010 -27.65066 -24.94114 -24.47191 -23.72381 -22.72160
-21.28577 -20.26823 -19.44672 -18.97906 -17.12673 -16.87874 -16.78091 -16.50707
-15.90457 -14.84394 -14.68318 -14.45116 -14.11977 -13.90440 -13.73608 -13.47994
-13.08932 -12.56717 -12.45151 -12.30178 -12.16853 -11.90812 -11.80628 -11.62757
-11.32860 -11.08807 -10.96894 -10.86566 -10.75816 -10.70764 -10.47625 -10.37320
-9.99769 -9.58620 -9.35213 -8.97362 -8.63321 -8.60995 -8.11420 -7.96089
-6.16959 -4.21304 0.66861 1.24323 1.43512 2.41897 2.58273 3.27316
3.34642 3.40019 3.80613 3.85822 4.19693 4.31245 4.37288 4.44331
4.80040 5.09595 5.18779 5.24605 5.43631 5.55338 5.56660 5.59984
5.74268 5.77340 5.85855 5.90053 6.02261 6.05515 6.12769 6.23221
6.37708 6.44732 6.56015 6.65732 6.92921 7.00427 7.20919 7.53686
7.62137 7.76928 7.86782 7.96058 8.17103 8.47425 8.79827 9.40419
9.47554 10.90095
Molecular weight = 316.14amu
Principal moments of inertia in cm(-1)
A = 0.012668 B = 0.005072 C = 0.003857
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2209.761501 B = 5518.858183 C = 7258.460292
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.105 4.105
2 C 0.148 3.852
3 C -0.206 4.206
4 C 0.190 3.810
5 N -0.470 5.470
6 C 0.036 3.964
7 C -0.112 4.112
8 C 0.247 3.753
9 O -0.594 6.594
10 C -0.524 4.524
11 H 0.063 0.937
12 C 0.069 3.931
13 N -0.898 5.898
14 Si 0.898 3.102
15 H -0.280 1.280
16 H -0.286 1.286
17 H -0.273 1.273
18 C 0.067 3.933
19 C -0.068 4.068
20 C 0.229 3.771
21 N -0.204 5.204
22 N -0.062 5.062
23 N -0.240 5.240
24 H 0.470 0.530
25 N -0.308 5.308
26 C 0.147 3.853
27 N -0.495 5.495
28 H 0.079 0.921
29 H 0.077 0.923
30 H 0.077 0.923
31 H 0.144 0.856
32 H 0.067 0.933
33 H 0.041 0.959
34 H 0.068 0.932
35 H 0.073 0.927
36 H 0.382 0.618
37 H 0.265 0.735
38 H 0.040 0.960
39 H 0.084 0.916
40 H 0.164 0.836
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.903 -15.075 -3.356 15.561
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.011 3.989
3 C -0.228 4.228
4 C 0.085 3.915
5 N -0.191 5.191
6 C -0.090 4.090
7 C -0.151 4.151
8 C 0.207 3.793
9 O -0.403 6.403
10 C -0.563 4.563
11 H 0.081 0.919
12 C -0.132 4.132
13 N -0.538 5.538
14 Si 0.725 3.275
15 H -0.206 1.206
16 H -0.212 1.212
17 H -0.198 1.198
18 C -0.058 4.058
19 C -0.075 4.075
20 C -0.052 4.052
21 N -0.077 5.077
22 N -0.058 5.058
23 N -0.084 5.084
24 H 0.323 0.677
25 N -0.160 5.160
26 C -0.014 4.014
27 N -0.205 5.205
28 H 0.097 0.903
29 H 0.096 0.904
30 H 0.096 0.904
31 H 0.162 0.838
32 H 0.086 0.914
33 H 0.059 0.941
34 H 0.087 0.913
35 H 0.092 0.908
36 H 0.232 0.768
37 H 0.075 0.925
38 H 0.058 0.942
39 H 0.102 0.898
40 H 0.181 0.819
Dipole moment (debyes) X Y Z Total
from point charges -1.385 -16.107 -3.244 16.489
hybrid contribution 0.742 1.530 0.271 1.722
sum -0.643 -14.577 -2.972 14.891
Atomic orbital electron populations
1.20752 0.88671 1.03644 1.03162 1.21279 0.97105 0.87978 0.92573
1.22658 0.95012 1.00209 1.04903 1.19521 0.90000 0.92425 0.89591
1.62428 1.50283 1.01440 1.04996 1.23485 0.97506 0.94808 0.93199
1.22973 1.01680 0.91657 0.98744 1.19301 0.82899 0.86882 0.90261
1.86086 1.37407 1.28608 1.88196 1.21636 1.13984 0.93899 1.26736
0.91853 1.24981 0.96018 0.97600 0.94624 1.69754 1.42691 1.09683
1.31663 0.86486 0.81197 0.78843 0.80945 1.20639 1.21159 1.19776
1.22948 0.99467 0.93705 0.89683 1.18237 0.86290 0.94068 1.08918
1.23191 0.95688 0.84427 1.01876 1.76656 0.92975 1.23872 1.14181
1.79112 1.19443 0.92328 1.14876 1.47722 1.06699 1.07205 1.46741
0.67704 1.74814 0.91127 1.26886 1.23200 1.22696 0.88831 0.97134
0.92734 1.67607 1.09086 1.28894 1.14915 0.90251 0.90380 0.90414
0.83788 0.91433 0.94098 0.91327 0.90848 0.76753 0.92492 0.94150
0.89777 0.81868
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.06 10.16 36.00 0.37 -0.70 16
2 C 0.15 2.03 6.77 -82.62 -0.56 1.47 16
3 C -0.21 -3.17 7.69 -39.28 -0.30 -3.47 16
4 C 0.19 3.29 4.84 -83.36 -0.40 2.88 16
5 N -0.47 -9.20 3.66 -166.74 -0.61 -9.81 16
6 C 0.04 0.69 6.40 -1.90 -0.01 0.68 16
7 C -0.11 -2.55 5.34 -24.87 -0.13 -2.68 16
8 C 0.25 5.99 0.99 -90.41 -0.09 5.90 16
9 O -0.59 -14.80 12.93 -35.23 -0.46 -15.26 16
10 C -0.52 -14.03 8.09 -34.44 -0.28 -14.31 16
11 H 0.06 1.73 7.36 -52.49 -0.39 1.34 16
12 C 0.07 1.83 5.22 -17.82 -0.09 1.74 16
13 N -0.90 -23.69 10.94 55.43 0.61 -23.08 16
14 Si 0.90 20.89 29.54 -169.99 -5.02 15.86 16
15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
16 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16
17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16
18 C 0.07 1.46 6.02 -2.76 -0.02 1.45 16
19 C -0.07 -1.09 5.91 -104.57 -0.62 -1.71 16
20 C 0.23 3.71 7.91 -156.30 -1.24 2.47 16
21 N -0.20 -3.73 11.08 32.14 0.36 -3.37 16
22 N -0.06 -0.95 13.47 60.35 0.81 -0.14 16
23 N -0.24 -2.69 7.90 60.35 0.48 -2.21 16
24 H 0.47 2.74 8.96 -340.37 -3.05 -0.31 16
25 N -0.31 -4.08 12.12 32.16 0.39 -3.70 16
26 C 0.15 2.04 10.86 -17.25 -0.19 1.86 16
27 N -0.50 -7.04 10.26 -9.30 -0.10 -7.14 16
28 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16
29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16
30 H 0.08 0.72 8.07 -51.93 -0.42 0.30 16
31 H 0.14 2.21 7.12 -52.49 -0.37 1.83 16
32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16
33 H 0.04 0.75 6.45 -51.93 -0.33 0.41 16
34 H 0.07 1.60 7.98 -51.93 -0.41 1.19 16
35 H 0.07 1.83 7.86 -51.93 -0.41 1.42 16
36 H 0.38 9.69 7.31 45.56 0.33 10.02 16
37 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16
38 H 0.04 0.86 6.84 -51.93 -0.36 0.50 16
39 H 0.08 1.93 7.39 -51.93 -0.38 1.55 16
40 H 0.16 1.89 7.90 -52.48 -0.41 1.47 16
LS Contribution 335.40 15.07 5.05 5.05
Total: -1.00 -30.32 335.40 -8.66 -38.98
By element:
Atomic # 1 Polarization: 15.85 SS G_CDS: -6.61 Total: 9.24 kcal
Atomic # 6 Polarization: -0.87 SS G_CDS: -3.56 Total: -4.43 kcal
Atomic # 7 Polarization: -51.39 SS G_CDS: 1.94 Total: -49.45 kcal
Atomic # 8 Polarization: -14.80 SS G_CDS: -0.46 Total: -15.26 kcal
Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal
Total LS contribution 5.05 Total: 5.05 kcal
Total: -30.32 -8.66 -38.98 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001592002095.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 167.302 kcal
(2) G-P(sol) polarization free energy of solvation -30.319 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.983 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.982 kcal
(6) G-S(sol) free energy of system = (1) + (5) 128.320 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds