Wall clock time and date at job start Tue Mar 31 2020 10:54:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 C 1.37957 * 119.44951 * 2 1
4 4 C 1.39315 * 119.18531 * 180.02562 * 3 2 1
5 5 N 1.38983 * 120.92114 * 179.97438 * 4 3 2
6 6 C 1.48543 * 110.99892 * 306.73975 * 5 4 3
7 7 C 1.54931 * 103.22559 * 159.71913 * 6 5 4
8 8 C 1.54594 * 102.92665 * 322.58956 * 7 6 5
9 9 O 1.42897 * 110.30929 * 263.04403 * 8 7 6
10 10 C 1.50701 * 110.39571 * 140.91303 * 8 7 6
11 11 H 1.07996 * 120.00268 * 244.61482 * 10 8 7
12 12 C 1.37879 * 119.99764 * 64.62009 * 10 8 7
13 13 N 1.31512 * 119.99830 * 352.27348 * 12 10 8
14 14 Si 1.86796 * 120.00075 * 172.28212 * 12 10 8
15 15 H 1.48498 * 109.47351 * 94.98188 * 14 12 10
16 16 H 1.48495 * 109.47067 * 214.98847 * 14 12 10
17 17 H 1.48505 * 109.46785 * 334.98672 * 14 12 10
18 18 C 1.47894 * 111.00167 * 64.13637 * 5 4 3
19 19 C 1.40518 * 118.16114 * 0.25202 * 4 3 2
20 20 C 1.48380 * 120.58330 * 179.72532 * 19 4 3
21 21 N 1.34066 * 126.68164 * 4.99281 * 20 19 4
22 22 N 1.28982 * 107.26787 * 179.86842 * 21 20 19
23 23 N 1.28732 * 108.95101 * 0.40608 * 22 21 20
24 24 H 0.96997 * 125.33540 * 179.71168 * 23 22 21
25 25 N 1.28869 * 109.32266 * 359.73964 * 23 22 21
26 26 C 1.39017 * 118.83131 * 359.50148 * 19 4 3
27 27 N 1.31858 * 120.67943 * 0.51008 * 26 19 4
28 28 H 1.09009 * 109.46727 * 89.99942 * 1 2 3
29 29 H 1.09000 * 109.47418 * 209.99939 * 1 2 3
30 30 H 1.08999 * 109.47295 * 330.00644 * 1 2 3
31 31 H 1.07998 * 120.40709 * 359.97438 * 3 2 1
32 32 H 1.08999 * 110.66575 * 278.15908 * 6 5 4
33 33 H 1.09003 * 110.66218 * 41.28498 * 6 5 4
34 34 H 1.09000 * 110.72697 * 204.22829 * 7 6 5
35 35 H 1.09001 * 110.87430 * 81.01884 * 7 6 5
36 36 H 0.96705 * 113.99938 * 295.71020 * 9 8 7
37 37 H 0.97000 * 119.99929 * 180.02562 * 13 12 10
38 38 H 1.08999 * 109.91849 * 333.51281 * 18 5 4
39 39 H 1.08997 * 109.91532 * 94.80491 * 18 5 4
40 40 H 1.08004 * 119.66161 * 180.25146 * 26 19 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1852 1.2013 0.0000
4 6 3.5784 1.1949 -0.0005
5 7 4.2980 2.3839 -0.0011
6 6 3.8635 3.2686 -1.1124
7 6 4.3451 4.6696 -0.6591
8 6 4.0995 4.6427 0.8669
9 8 2.8531 5.2675 1.1798
10 6 5.2261 5.3324 1.5924
11 1 5.8652 4.7698 2.2566
12 6 5.4407 6.6819 1.4081
13 7 4.7645 7.3358 0.4891
14 14 6.6922 7.5812 2.4637
15 1 7.9931 7.6373 1.7497
16 1 6.2140 8.9615 2.7305
17 1 6.8645 6.8596 3.7501
18 6 4.0577 3.1495 1.2412
19 6 4.2358 -0.0470 -0.0065
20 6 5.7180 -0.1165 -0.0135
21 7 6.5686 0.9157 0.0786
22 7 7.7635 0.4319 0.0374
23 7 7.6925 -0.8477 -0.0842
24 1 8.4517 -1.4487 -0.1421
25 7 6.4548 -1.2049 -0.1174
26 6 3.4732 -1.2093 -0.0010
27 7 2.1560 -1.1497 -0.0005
28 1 -0.3633 0.0000 -1.0278
29 1 -0.3634 -0.8900 0.5138
30 1 -0.3634 0.8900 0.5137
31 1 1.6429 2.1352 -0.0004
32 1 4.3464 2.9791 -2.0458
33 1 2.7787 3.2499 -1.2173
34 1 3.7521 5.4528 -1.1315
35 1 5.4044 4.8055 -0.8770
36 1 2.8207 6.2099 0.9654
37 1 4.9157 8.2851 0.3592
38 1 3.0795 2.8964 1.6500
39 1 4.8366 2.9276 1.9707
40 1 3.9647 -2.1710 -0.0014
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001592002095.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:54:39
Heat of formation + Delta-G solvation = 105.611956 kcal
Electronic energy + Delta-G solvation = -26828.995659 eV
Core-core repulsion = 23067.293592 eV
Total energy + Delta-G solvation = -3761.702067 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.139 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-45.30324 -41.80920 -39.84650 -36.97733 -35.49558 -34.86376 -34.12793 -33.14508
-32.92139 -30.03778 -29.88194 -28.72780 -26.67701 -25.77848 -24.84982 -24.07030
-22.56524 -21.76610 -21.22882 -20.09026 -19.10129 -18.07973 -18.00305 -17.70769
-17.20095 -16.82813 -16.15606 -15.85117 -15.57426 -15.44252 -14.98846 -14.67780
-14.55242 -14.14385 -13.95011 -13.62507 -13.31063 -13.22390 -13.17954 -13.04173
-12.97656 -12.79762 -12.54127 -12.35038 -12.24060 -12.18459 -11.99250 -11.95389
-11.90973 -11.14766 -10.71482 -10.65613 -10.37984 -10.07846 -9.73429 -9.48213
-8.19248 -6.30353 -0.46714 0.04294 0.29552 1.38703 1.40566 1.43317
1.53277 1.53373 2.41472 2.66103 2.72387 2.76551 3.06632 3.24288
3.34057 3.69417 3.88901 3.99275 4.10513 4.21032 4.25945 4.37129
4.45388 4.48475 4.53333 4.63187 4.65270 4.77328 4.82540 4.90944
5.04403 5.12001 5.18653 5.23386 5.38692 5.55168 5.64533 5.74000
5.75986 5.86803 6.16342 6.33145 6.71499 6.84863 7.31893 7.38008
7.41415 8.86102
Molecular weight = 316.14amu
Principal moments of inertia in cm(-1)
A = 0.012668 B = 0.005072 C = 0.003857
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2209.761501 B = 5518.858183 C = 7258.460292
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.103 4.103
2 C 0.153 3.847
3 C -0.210 4.210
4 C 0.164 3.836
5 N -0.471 5.471
6 C 0.047 3.953
7 C -0.101 4.101
8 C 0.236 3.764
9 O -0.596 6.596
10 C -0.550 4.550
11 H 0.047 0.953
12 C 0.033 3.967
13 N -0.909 5.909
14 Si 0.952 3.048
15 H -0.279 1.279
16 H -0.277 1.277
17 H -0.276 1.276
18 C 0.081 3.919
19 C -0.078 4.078
20 C 0.214 3.786
21 N -0.252 5.252
22 N -0.076 5.076
23 N -0.204 5.204
24 H 0.492 0.508
25 N -0.290 5.290
26 C 0.157 3.843
27 N -0.497 5.497
28 H 0.097 0.903
29 H 0.088 0.912
30 H 0.087 0.913
31 H 0.143 0.857
32 H 0.078 0.922
33 H 0.055 0.945
34 H 0.058 0.942
35 H 0.044 0.956
36 H 0.378 0.622
37 H 0.269 0.731
38 H 0.042 0.958
39 H 0.064 0.936
40 H 0.189 0.811
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.427 -16.913 -3.636 17.469
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.016 3.984
3 C -0.232 4.232
4 C 0.059 3.941
5 N -0.192 5.192
6 C -0.079 4.079
7 C -0.140 4.140
8 C 0.196 3.804
9 O -0.404 6.404
10 C -0.589 4.589
11 H 0.066 0.934
12 C -0.167 4.167
13 N -0.549 5.549
14 Si 0.778 3.222
15 H -0.205 1.205
16 H -0.202 1.202
17 H -0.201 1.201
18 C -0.045 4.045
19 C -0.084 4.084
20 C -0.066 4.066
21 N -0.124 5.124
22 N -0.071 5.071
23 N -0.054 5.054
24 H 0.351 0.649
25 N -0.143 5.143
26 C -0.003 4.003
27 N -0.207 5.207
28 H 0.115 0.885
29 H 0.107 0.893
30 H 0.105 0.895
31 H 0.160 0.840
32 H 0.096 0.904
33 H 0.074 0.926
34 H 0.076 0.924
35 H 0.063 0.937
36 H 0.227 0.773
37 H 0.078 0.922
38 H 0.061 0.939
39 H 0.082 0.918
40 H 0.206 0.794
Dipole moment (debyes) X Y Z Total
from point charges -1.894 -17.961 -3.531 18.402
hybrid contribution 0.938 1.966 0.346 2.205
sum -0.955 -15.995 -3.185 16.337
Atomic orbital electron populations
1.20867 0.85965 1.04661 1.04555 1.21780 0.98794 0.87099 0.90711
1.22650 0.94195 1.00968 1.05388 1.19598 0.90864 0.91738 0.91906
1.62266 1.51365 1.01898 1.03659 1.23355 0.98318 0.92630 0.93562
1.22691 0.99692 0.93670 0.97922 1.19424 0.81995 0.88005 0.90927
1.86076 1.37709 1.28269 1.88352 1.21837 1.14995 0.94671 1.27353
0.93428 1.25575 0.97589 0.98062 0.95491 1.69816 1.43206 1.09902
1.31963 0.85638 0.79253 0.77966 0.79299 1.20481 1.20209 1.20084
1.22636 0.98735 0.92529 0.90605 1.18361 0.86490 0.94187 1.09397
1.23299 0.95985 0.84631 1.02720 1.76628 0.94046 1.25604 1.16105
1.79033 1.18714 0.93662 1.15741 1.47782 1.07069 1.06671 1.43841
0.64929 1.74779 0.91402 1.25718 1.22430 1.23048 0.88723 0.97363
0.91204 1.67744 1.09133 1.28929 1.14884 0.88493 0.89307 0.89468
0.83969 0.90364 0.92648 0.92370 0.93663 0.77280 0.92211 0.93946
0.91752 0.79428
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.79 10.16 71.23 0.72 -1.06 16
2 C 0.15 3.86 6.77 42.46 0.29 4.15 16
3 C -0.21 -6.21 7.69 22.46 0.17 -6.04 16
4 C 0.16 5.58 4.84 38.82 0.19 5.77 16
5 N -0.47 -18.65 3.66 -681.45 -2.50 -21.15 16
6 C 0.05 1.83 6.40 86.65 0.55 2.39 16
7 C -0.10 -4.73 5.34 31.80 0.17 -4.56 16
8 C 0.24 11.80 0.99 -10.66 -0.01 11.79 16
9 O -0.60 -30.25 12.93 -148.98 -1.93 -32.17 16
10 C -0.55 -30.38 8.09 25.60 0.21 -30.17 16
11 H 0.05 2.71 7.36 -2.91 -0.02 2.69 16
12 C 0.03 1.78 5.22 84.66 0.44 2.22 16
13 N -0.91 -48.59 10.94 21.45 0.23 -48.36 16
14 Si 0.95 43.32 29.54 68.60 2.03 45.35 16
15 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16
16 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16
17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16
18 C 0.08 3.62 6.02 86.45 0.52 4.14 16
19 C -0.08 -2.41 5.91 -19.83 -0.12 -2.52 16
20 C 0.21 6.78 7.91 137.34 1.09 7.86 16
21 N -0.25 -9.26 11.08 -52.22 -0.58 -9.84 16
22 N -0.08 -2.30 13.47 37.02 0.50 -1.80 16
23 N -0.20 -4.21 7.90 37.02 0.29 -3.92 16
24 H 0.49 4.55 8.96 -347.54 -3.12 1.44 16
25 N -0.29 -7.14 12.12 -52.16 -0.63 -7.77 16
26 C 0.16 4.02 10.86 84.88 0.92 4.94 16
27 N -0.50 -12.87 10.26 -183.35 -1.88 -14.75 16
28 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16
29 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16
30 H 0.09 1.37 8.07 -2.39 -0.02 1.35 16
31 H 0.14 4.21 7.12 -2.91 -0.02 4.19 16
32 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16
33 H 0.06 1.99 6.45 -2.39 -0.02 1.97 16
34 H 0.06 2.79 7.98 -2.39 -0.02 2.77 16
35 H 0.04 2.33 7.86 -2.39 -0.02 2.32 16
36 H 0.38 19.57 7.31 -74.05 -0.54 19.03 16
37 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16
38 H 0.04 1.84 6.84 -2.39 -0.02 1.82 16
39 H 0.06 3.10 7.39 -2.39 -0.02 3.08 16
40 H 0.19 3.77 7.90 -2.91 -0.02 3.74 16
Total: -1.00 -65.95 335.40 -1.85 -67.80
By element:
Atomic # 1 Polarization: 30.24 SS G_CDS: -2.54 Total: 27.71 kcal
Atomic # 6 Polarization: -6.24 SS G_CDS: 5.15 Total: -1.09 kcal
Atomic # 7 Polarization: -103.02 SS G_CDS: -4.56 Total: -107.58 kcal
Atomic # 8 Polarization: -30.25 SS G_CDS: -1.93 Total: -32.17 kcal
Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal
Total: -65.95 -1.85 -67.80 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001592002095.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 173.407 kcal
(2) G-P(sol) polarization free energy of solvation -65.946 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.461 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.849 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.796 kcal
(6) G-S(sol) free energy of system = (1) + (5) 105.612 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds