Wall clock time and date at job start Tue Mar 31 2020 11:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39895 * 120.48016 * 2 1 4 4 C 1.35447 * 120.08439 * 180.02562 * 3 2 1 5 5 N 1.35732 * 121.09772 * 359.97438 * 4 3 2 6 6 C 1.46494 * 119.51044 * 180.02562 * 5 4 3 7 7 N 1.46495 * 109.47548 * 89.99866 * 6 5 4 8 8 C 1.36931 * 120.00213 * 89.99913 * 7 6 5 9 9 H 1.08003 * 120.00188 * 216.79916 * 8 7 6 10 10 C 1.38816 * 120.00104 * 36.79546 * 8 7 6 11 11 N 1.31625 * 119.99810 * 20.33931 * 10 8 7 12 12 Si 1.86794 * 120.00335 * 200.34091 * 10 8 7 13 13 H 1.48497 * 109.47392 * 179.97438 * 12 10 8 14 14 H 1.48509 * 109.47136 * 299.99840 * 12 10 8 15 15 H 1.48506 * 109.47303 * 60.00016 * 12 10 8 16 16 C 1.46505 * 119.99979 * 269.99738 * 7 6 5 17 17 C 1.52994 * 117.49722 * 194.09099 * 16 7 6 18 18 C 1.53003 * 117.49664 * 125.43152 * 16 7 6 19 19 C 1.34656 * 120.97774 * 0.27629 * 5 4 3 20 20 O 1.21980 * 120.06891 * 179.72974 * 19 5 4 21 21 C 1.38572 * 120.47992 * 180.02562 * 2 1 3 22 22 C 1.48233 * 120.53030 * 359.97438 * 21 2 1 23 23 N 1.34117 * 126.68652 * 0.02562 * 22 21 2 24 24 N 1.28981 * 107.25799 * 179.97438 * 23 22 21 25 25 N 1.28726 * 108.97290 * 359.97438 * 24 23 22 26 26 H 0.97001 * 125.33181 * 180.02562 * 25 24 23 27 27 N 1.28874 * 109.33542 * 359.76819 * 25 24 23 28 28 H 1.08998 * 109.47531 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.47262 * 120.00111 * 1 2 3 30 30 H 1.09006 * 109.47064 * 239.99931 * 1 2 3 31 31 H 1.07997 * 119.96098 * 0.04486 * 3 2 1 32 32 H 1.07995 * 119.45157 * 179.97438 * 4 3 2 33 33 H 1.09005 * 109.47347 * 329.99449 * 6 5 4 34 34 H 1.09001 * 109.46926 * 210.00004 * 6 5 4 35 35 H 0.96996 * 120.00140 * 176.28867 * 11 10 8 36 36 H 1.08997 * 115.54918 * 339.76861 * 16 7 6 37 37 H 1.08995 * 117.50178 * 0.02562 * 17 16 7 38 38 H 1.09007 * 117.49403 * 145.02296 * 17 16 7 39 39 H 1.08999 * 117.50007 * 214.98135 * 18 16 7 40 40 H 1.08997 * 117.49884 * 359.97438 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2166 1.2056 0.0000 4 6 3.5710 1.1963 -0.0005 5 7 4.2640 0.0292 -0.0005 6 6 5.7287 0.0597 -0.0005 7 7 6.2170 0.0698 1.3806 8 6 6.4699 -1.1110 2.0261 9 1 6.2499 -1.2087 3.0790 10 6 7.0088 -2.1825 1.3273 11 7 7.6412 -1.9762 0.1915 12 14 6.8368 -3.9171 1.9988 13 1 7.4928 -4.8740 1.0720 14 1 7.4832 -3.9976 3.3334 15 1 5.3970 -4.2587 2.1246 16 6 6.4348 1.3434 2.0712 17 6 7.2449 1.3139 3.3687 18 6 5.7328 1.5473 3.4153 19 6 3.6252 -1.1562 -0.0056 20 8 4.2646 -2.1950 -0.0105 21 6 2.2099 -1.1942 -0.0005 22 6 1.4915 -2.4908 -0.0005 23 7 0.1624 -2.6704 -0.0006 24 7 -0.0519 -3.9423 -0.0011 25 7 1.0790 -4.5572 -0.0020 26 1 1.1938 -5.5204 -0.0029 27 7 2.0348 -3.6927 -0.0069 28 1 -0.3634 1.0276 0.0005 29 1 -0.3634 -0.5139 -0.8900 30 1 -0.3633 -0.5139 0.8900 31 1 1.6838 2.1450 0.0007 32 1 4.1085 2.1330 -0.0009 33 1 6.0735 0.9570 -0.5145 34 1 6.1104 -0.8226 -0.5144 35 1 8.0643 -2.7173 -0.2696 36 1 6.5493 2.2144 1.4260 37 1 7.6162 0.3470 3.7083 38 1 7.8922 2.1658 3.5773 39 1 5.3859 2.5525 3.6545 40 1 5.1086 0.7341 3.7855 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592266430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:14 Heat of formation + Delta-G solvation = 185.567801 kcal Electronic energy + Delta-G solvation = -27268.249091 eV Core-core repulsion = 23510.014170 eV Total energy + Delta-G solvation = -3758.234921 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.95953 -40.48734 -37.17940 -36.24708 -35.22348 -33.74992 -33.15010 -32.31154 -30.52769 -29.24890 -28.32020 -25.51542 -24.42514 -23.83878 -23.50051 -21.65559 -21.50939 -20.89973 -19.98445 -18.77634 -17.26955 -16.77128 -16.70193 -16.14588 -15.54660 -15.45558 -14.83545 -14.34870 -14.06089 -13.88743 -13.70652 -13.43031 -13.16897 -12.68328 -12.57603 -12.07847 -11.90282 -11.72132 -11.43293 -11.26024 -11.06374 -10.93984 -10.89836 -10.77726 -10.70022 -10.66614 -10.51792 -10.47428 -10.07582 -9.82239 -9.53030 -9.02525 -8.89492 -8.43981 -7.19508 -6.80631 -5.96976 -3.51657 0.95824 1.56795 2.50908 2.66874 2.75737 3.35750 3.48695 3.50087 3.62154 4.28332 4.35152 4.50758 4.67523 4.82285 4.94120 5.10221 5.13196 5.38025 5.49490 5.53081 5.68097 5.69713 5.89581 5.92009 5.92929 5.95122 6.04448 6.07730 6.20688 6.34850 6.41360 6.44224 6.65997 6.68893 6.79809 6.82592 7.05637 7.12873 7.28906 7.75260 7.90770 8.34816 8.61693 8.96771 9.00414 9.63716 10.09527 11.09947 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.012432 B = 0.006328 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.734527 B = 4423.991565 C = 5964.710767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.067 3.933 3 C -0.274 4.274 4 C 0.183 3.817 5 N -0.491 5.491 6 C 0.315 3.685 7 N -0.529 5.529 8 C -0.283 4.283 9 H 0.061 0.939 10 C 0.055 3.945 11 N -0.883 5.883 12 Si 0.911 3.089 13 H -0.291 1.291 14 H -0.289 1.289 15 H -0.272 1.272 16 C 0.113 3.887 17 C -0.186 4.186 18 C -0.222 4.222 19 C 0.527 3.473 20 O -0.490 6.490 21 C -0.187 4.187 22 C 0.251 3.749 23 N -0.282 5.282 24 N -0.074 5.074 25 N -0.239 5.239 26 H 0.470 0.530 27 N -0.262 5.262 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.139 0.861 32 H 0.153 0.847 33 H 0.063 0.937 34 H 0.147 0.853 35 H 0.261 0.739 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.512 5.884 -1.996 12.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.059 3.941 3 C -0.298 4.298 4 C 0.047 3.953 5 N -0.204 5.204 6 C 0.109 3.891 7 N -0.244 5.244 8 C -0.411 4.411 9 H 0.078 0.922 10 C -0.148 4.148 11 N -0.523 5.523 12 Si 0.740 3.260 13 H -0.217 1.217 14 H -0.215 1.215 15 H -0.198 1.198 16 C 0.004 3.996 17 C -0.225 4.225 18 C -0.263 4.263 19 C 0.323 3.677 20 O -0.365 6.365 21 C -0.196 4.196 22 C -0.028 4.028 23 N -0.157 5.157 24 N -0.069 5.069 25 N -0.084 5.084 26 H 0.323 0.677 27 N -0.113 5.113 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.157 0.843 32 H 0.170 0.830 33 H 0.081 0.919 34 H 0.164 0.836 35 H 0.071 0.929 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.358 4.566 -2.168 11.525 hybrid contribution 0.295 -1.067 0.560 1.240 sum -10.063 3.499 -1.608 10.774 Atomic orbital electron populations 1.20952 0.90140 1.02037 1.03977 1.20401 0.96410 0.91410 0.85838 1.20227 0.92630 0.97746 1.19177 1.22166 0.93259 0.91436 0.88452 1.48057 1.12454 1.05141 1.54729 1.22225 0.73732 1.04793 0.88359 1.43779 1.68398 1.00812 1.11438 1.18700 1.39367 0.88337 0.94680 0.92168 1.24961 0.94258 0.99100 0.96478 1.69696 1.33211 1.31651 1.17723 0.86265 0.78707 0.83833 0.77206 1.21685 1.21527 1.19753 1.21266 1.01264 0.89912 0.87118 1.23058 0.92926 1.02415 1.04115 1.23358 0.95458 1.00602 1.06883 1.16559 0.87060 0.84208 0.79898 1.91025 1.67424 1.30065 1.48012 1.18089 0.92423 0.87353 1.21738 1.23043 0.87073 0.92113 1.00542 1.76092 1.14507 1.05520 1.19550 1.78721 1.11113 1.00933 1.16112 1.47849 1.01524 1.12346 1.46723 0.67736 1.75553 1.15970 0.99193 1.20613 0.91765 0.89965 0.89966 0.84309 0.83001 0.91901 0.83612 0.92892 0.89114 0.88075 0.90505 0.90643 0.89718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 8.43 36.01 0.30 -1.13 16 2 C 0.07 1.03 5.95 -103.88 -0.62 0.41 16 3 C -0.27 -3.60 9.65 -39.96 -0.39 -3.99 16 4 C 0.18 2.66 10.26 -16.82 -0.17 2.48 16 5 N -0.49 -9.53 2.82 -122.93 -0.35 -9.87 16 6 C 0.31 6.75 5.52 -63.76 -0.35 6.40 16 7 N -0.53 -12.13 3.03 -169.35 -0.51 -12.64 16 8 C -0.28 -7.49 7.95 -15.06 -0.12 -7.61 16 9 H 0.06 1.66 7.16 -52.48 -0.38 1.28 16 10 C 0.06 1.51 4.15 -17.43 -0.07 1.44 16 11 N -0.88 -24.65 11.34 55.49 0.63 -24.02 16 12 Si 0.91 23.36 29.60 -169.99 -5.03 18.33 16 13 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 14 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 15 H -0.27 -7.36 7.11 56.52 0.40 -6.96 16 16 C 0.11 2.16 6.61 -67.93 -0.45 1.71 16 17 C -0.19 -3.46 9.81 -26.70 -0.26 -3.72 16 18 C -0.22 -3.95 10.08 -26.69 -0.27 -4.22 16 19 C 0.53 11.70 7.43 -15.04 -0.11 11.59 16 20 O -0.49 -12.87 14.18 4.94 0.07 -12.80 16 21 C -0.19 -3.64 5.92 -104.39 -0.62 -4.26 16 22 C 0.25 4.89 7.81 -156.27 -1.22 3.67 16 23 N -0.28 -4.86 9.53 32.13 0.31 -4.56 16 24 N -0.07 -1.16 13.47 60.35 0.81 -0.34 16 25 N -0.24 -3.57 7.90 60.35 0.48 -3.10 16 26 H 0.47 4.70 8.96 -340.35 -3.05 1.64 16 27 N -0.26 -5.20 11.13 32.14 0.36 -4.84 16 28 H 0.06 0.61 7.93 -51.93 -0.41 0.20 16 29 H 0.08 1.05 7.46 -51.93 -0.39 0.67 16 30 H 0.08 1.09 7.46 -51.93 -0.39 0.71 16 31 H 0.14 1.33 7.99 -52.49 -0.42 0.91 16 32 H 0.15 1.65 8.02 -52.49 -0.42 1.23 16 33 H 0.06 1.14 7.90 -51.93 -0.41 0.73 16 34 H 0.15 3.75 4.64 -51.93 -0.24 3.51 16 35 H 0.26 7.21 8.32 -40.82 -0.34 6.87 16 36 H 0.09 1.49 8.10 -51.93 -0.42 1.07 16 37 H 0.10 2.15 6.93 -51.93 -0.36 1.79 16 38 H 0.08 1.23 8.14 -51.92 -0.42 0.80 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.08 1.71 8.01 -51.93 -0.42 1.29 16 LS Contribution 339.06 15.07 5.11 5.11 Total: -1.00 -33.55 339.06 -9.76 -43.31 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -7.28 Total: 2.64 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -4.35 Total: 2.79 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: 1.72 Total: -59.37 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.07 Total: -12.80 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -5.03 Total: 18.33 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.55 -9.76 -43.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592266430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.874 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 195.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds