Wall clock time and date at job start Tue Mar 31 2020 11:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39895 * 120.48016 * 2 1 4 4 C 1.35447 * 120.08439 * 180.02562 * 3 2 1 5 5 N 1.35732 * 121.09772 * 359.97438 * 4 3 2 6 6 C 1.46494 * 119.51044 * 180.02562 * 5 4 3 7 7 N 1.46495 * 109.47548 * 89.99866 * 6 5 4 8 8 C 1.36931 * 120.00213 * 89.99913 * 7 6 5 9 9 H 1.08003 * 120.00188 * 216.79916 * 8 7 6 10 10 C 1.38816 * 120.00104 * 36.79546 * 8 7 6 11 11 N 1.31625 * 119.99810 * 20.33931 * 10 8 7 12 12 Si 1.86794 * 120.00335 * 200.34091 * 10 8 7 13 13 H 1.48497 * 109.47392 * 179.97438 * 12 10 8 14 14 H 1.48509 * 109.47136 * 299.99840 * 12 10 8 15 15 H 1.48506 * 109.47303 * 60.00016 * 12 10 8 16 16 C 1.46505 * 119.99979 * 269.99738 * 7 6 5 17 17 C 1.52994 * 117.49722 * 194.09099 * 16 7 6 18 18 C 1.53003 * 117.49664 * 125.43152 * 16 7 6 19 19 C 1.34656 * 120.97774 * 0.27629 * 5 4 3 20 20 O 1.21980 * 120.06891 * 179.72974 * 19 5 4 21 21 C 1.38572 * 120.47992 * 180.02562 * 2 1 3 22 22 C 1.48233 * 120.53030 * 359.97438 * 21 2 1 23 23 N 1.34117 * 126.68652 * 0.02562 * 22 21 2 24 24 N 1.28981 * 107.25799 * 179.97438 * 23 22 21 25 25 N 1.28726 * 108.97290 * 359.97438 * 24 23 22 26 26 H 0.97001 * 125.33181 * 180.02562 * 25 24 23 27 27 N 1.28874 * 109.33542 * 359.76819 * 25 24 23 28 28 H 1.08998 * 109.47531 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.47262 * 120.00111 * 1 2 3 30 30 H 1.09006 * 109.47064 * 239.99931 * 1 2 3 31 31 H 1.07997 * 119.96098 * 0.04486 * 3 2 1 32 32 H 1.07995 * 119.45157 * 179.97438 * 4 3 2 33 33 H 1.09005 * 109.47347 * 329.99449 * 6 5 4 34 34 H 1.09001 * 109.46926 * 210.00004 * 6 5 4 35 35 H 0.96996 * 120.00140 * 176.28867 * 11 10 8 36 36 H 1.08997 * 115.54918 * 339.76861 * 16 7 6 37 37 H 1.08995 * 117.50178 * 0.02562 * 17 16 7 38 38 H 1.09007 * 117.49403 * 145.02296 * 17 16 7 39 39 H 1.08999 * 117.50007 * 214.98135 * 18 16 7 40 40 H 1.08997 * 117.49884 * 359.97438 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2166 1.2056 0.0000 4 6 3.5710 1.1963 -0.0005 5 7 4.2640 0.0292 -0.0005 6 6 5.7287 0.0597 -0.0005 7 7 6.2170 0.0698 1.3806 8 6 6.4699 -1.1110 2.0261 9 1 6.2499 -1.2087 3.0790 10 6 7.0088 -2.1825 1.3273 11 7 7.6412 -1.9762 0.1915 12 14 6.8368 -3.9171 1.9988 13 1 7.4928 -4.8740 1.0720 14 1 7.4832 -3.9976 3.3334 15 1 5.3970 -4.2587 2.1246 16 6 6.4348 1.3434 2.0712 17 6 7.2449 1.3139 3.3687 18 6 5.7328 1.5473 3.4153 19 6 3.6252 -1.1562 -0.0056 20 8 4.2646 -2.1950 -0.0105 21 6 2.2099 -1.1942 -0.0005 22 6 1.4915 -2.4908 -0.0005 23 7 0.1624 -2.6704 -0.0006 24 7 -0.0519 -3.9423 -0.0011 25 7 1.0790 -4.5572 -0.0020 26 1 1.1938 -5.5204 -0.0029 27 7 2.0348 -3.6927 -0.0069 28 1 -0.3634 1.0276 0.0005 29 1 -0.3634 -0.5139 -0.8900 30 1 -0.3633 -0.5139 0.8900 31 1 1.6838 2.1450 0.0007 32 1 4.1085 2.1330 -0.0009 33 1 6.0735 0.9570 -0.5145 34 1 6.1104 -0.8226 -0.5144 35 1 8.0643 -2.7173 -0.2696 36 1 6.5493 2.2144 1.4260 37 1 7.6162 0.3470 3.7083 38 1 7.8922 2.1658 3.5773 39 1 5.3859 2.5525 3.6545 40 1 5.1086 0.7341 3.7855 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592266430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:13 Heat of formation + Delta-G solvation = 162.992976 kcal Electronic energy + Delta-G solvation = -27269.228009 eV Core-core repulsion = 23510.014170 eV Total energy + Delta-G solvation = -3759.213839 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.28670 -41.91291 -38.74096 -37.73475 -36.60053 -35.21153 -34.76859 -33.72246 -32.25020 -30.58584 -29.64302 -27.27393 -25.80612 -25.19353 -25.03547 -22.99940 -22.93600 -22.25002 -21.63958 -20.08511 -18.88604 -18.21668 -18.03883 -17.73760 -17.10202 -16.80628 -16.59065 -15.95086 -15.74364 -15.39644 -15.07931 -14.73976 -14.58600 -14.06594 -13.69736 -13.65031 -13.31728 -13.08147 -13.02669 -12.86277 -12.81304 -12.51850 -12.39908 -12.36788 -12.22233 -12.16815 -12.04717 -12.00309 -11.78604 -11.53743 -10.95831 -10.60530 -10.40274 -10.27023 -8.63406 -8.58838 -8.00254 -5.53800 -0.31461 0.26319 1.19446 1.30410 1.36897 1.37899 1.48692 1.52894 2.02387 2.43822 2.94210 3.00906 3.22099 3.33373 3.48688 3.50428 3.88236 3.98241 4.20204 4.30364 4.32053 4.46137 4.47515 4.52162 4.55807 4.67348 4.92670 4.92789 4.97948 5.04690 5.12442 5.23797 5.34699 5.40966 5.52278 5.55837 5.57576 5.64188 5.68193 5.95268 6.33674 6.54201 7.05716 7.27839 7.48975 7.74249 8.15441 9.01426 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.012432 B = 0.006328 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.734527 B = 4423.991565 C = 5964.710767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.085 3.915 3 C -0.252 4.252 4 C 0.178 3.822 5 N -0.498 5.498 6 C 0.321 3.679 7 N -0.547 5.547 8 C -0.268 4.268 9 H 0.038 0.962 10 C 0.022 3.978 11 N -0.898 5.898 12 Si 0.937 3.063 13 H -0.292 1.292 14 H -0.278 1.278 15 H -0.301 1.301 16 C 0.102 3.898 17 C -0.193 4.193 18 C -0.202 4.202 19 C 0.510 3.490 20 O -0.553 6.553 21 C -0.233 4.233 22 C 0.240 3.760 23 N -0.282 5.282 24 N -0.062 5.062 25 N -0.219 5.219 26 H 0.486 0.514 27 N -0.310 5.310 28 H 0.106 0.894 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.194 0.806 32 H 0.201 0.799 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.252 0.748 36 H 0.133 0.867 37 H 0.062 0.938 38 H 0.110 0.890 39 H 0.117 0.883 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.391 10.233 -1.989 16.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.077 3.923 3 C -0.275 4.275 4 C 0.045 3.955 5 N -0.210 5.210 6 C 0.114 3.886 7 N -0.264 5.264 8 C -0.397 4.397 9 H 0.056 0.944 10 C -0.179 4.179 11 N -0.540 5.540 12 Si 0.768 3.232 13 H -0.218 1.218 14 H -0.204 1.204 15 H -0.228 1.228 16 C -0.005 4.005 17 C -0.232 4.232 18 C -0.243 4.243 19 C 0.309 3.691 20 O -0.433 6.433 21 C -0.242 4.242 22 C -0.038 4.038 23 N -0.156 5.156 24 N -0.057 5.057 25 N -0.068 5.068 26 H 0.343 0.657 27 N -0.162 5.162 28 H 0.124 0.876 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.211 0.789 32 H 0.218 0.782 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.062 0.938 36 H 0.151 0.849 37 H 0.081 0.919 38 H 0.128 0.872 39 H 0.135 0.865 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.275 8.955 -2.148 15.345 hybrid contribution 0.683 -2.296 0.573 2.463 sum -11.592 6.659 -1.575 13.461 Atomic orbital electron populations 1.21014 0.87830 1.04560 1.03312 1.20927 0.98093 0.90782 0.82532 1.20885 0.92162 0.98748 1.15681 1.23000 0.94246 0.91071 0.87208 1.47584 1.11872 1.06150 1.55362 1.21845 0.74688 1.04498 0.87521 1.43827 1.69583 1.01099 1.11863 1.18539 1.37330 0.90122 0.93746 0.94439 1.25196 0.95427 1.00188 0.97049 1.69772 1.34786 1.31118 1.18350 0.85839 0.76718 0.83191 0.77406 1.21823 1.20401 1.22810 1.21626 1.01865 0.89250 0.87771 1.23058 0.94165 1.01841 1.04099 1.23283 0.94212 1.01490 1.05284 1.17064 0.88204 0.84305 0.79546 1.90980 1.68651 1.32214 1.51461 1.18175 0.91483 0.88970 1.25563 1.23268 0.87762 0.92258 1.00514 1.76069 1.13436 1.05937 1.20181 1.78619 1.11032 1.00744 1.15304 1.47801 1.00548 1.12936 1.45521 0.65662 1.75512 1.17791 1.00331 1.22553 0.87572 0.90281 0.90785 0.78917 0.78239 0.87998 0.88224 0.93814 0.84915 0.91909 0.87210 0.86535 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.36 8.43 71.24 0.60 -1.76 16 2 C 0.08 2.34 5.95 -19.38 -0.12 2.23 16 3 C -0.25 -5.24 9.65 22.03 0.21 -5.03 16 4 C 0.18 4.34 10.26 83.44 0.86 5.20 16 5 N -0.50 -18.69 2.82 -661.00 -1.87 -20.55 16 6 C 0.32 13.54 5.52 170.96 0.94 14.48 16 7 N -0.55 -24.78 3.03 -689.70 -2.09 -26.87 16 8 C -0.27 -14.65 7.95 84.04 0.67 -13.99 16 9 H 0.04 2.18 7.16 -2.91 -0.02 2.16 16 10 C 0.02 1.25 4.15 84.86 0.35 1.60 16 11 N -0.90 -52.34 11.34 21.65 0.25 -52.09 16 12 Si 0.94 50.50 29.60 68.60 2.03 52.53 16 13 H -0.29 -15.58 7.11 99.48 0.71 -14.87 16 14 H -0.28 -14.19 7.11 99.48 0.71 -13.48 16 15 H -0.30 -17.44 7.11 99.48 0.71 -16.73 16 16 C 0.10 3.58 6.61 44.99 0.30 3.88 16 17 C -0.19 -6.78 9.81 30.62 0.30 -6.47 16 18 C -0.20 -6.57 10.08 30.62 0.31 -6.26 16 19 C 0.51 23.21 7.43 85.09 0.63 23.84 16 20 O -0.55 -30.88 14.18 -5.25 -0.07 -30.96 16 21 C -0.23 -9.08 5.92 -19.71 -0.12 -9.20 16 22 C 0.24 9.59 7.81 137.26 1.07 10.67 16 23 N -0.28 -9.67 9.53 -52.27 -0.50 -10.16 16 24 N -0.06 -1.94 13.47 37.02 0.50 -1.44 16 25 N -0.22 -6.75 7.90 37.02 0.29 -6.46 16 26 H 0.49 10.15 8.96 -347.52 -3.12 7.03 16 27 N -0.31 -12.93 11.13 -52.22 -0.58 -13.51 16 28 H 0.11 1.38 7.93 -2.39 -0.02 1.36 16 29 H 0.08 1.80 7.46 -2.38 -0.02 1.78 16 30 H 0.07 1.77 7.46 -2.38 -0.02 1.75 16 31 H 0.19 2.03 7.99 -2.91 -0.02 2.01 16 32 H 0.20 2.91 8.02 -2.91 -0.02 2.89 16 33 H 0.10 3.41 7.90 -2.38 -0.02 3.39 16 34 H 0.10 5.30 4.64 -2.39 -0.01 5.29 16 35 H 0.25 14.67 8.32 -92.71 -0.77 13.90 16 36 H 0.13 3.57 8.10 -2.39 -0.02 3.55 16 37 H 0.06 2.70 6.93 -2.39 -0.02 2.68 16 38 H 0.11 3.10 8.14 -2.38 -0.02 3.08 16 39 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 40 H 0.05 2.01 8.01 -2.39 -0.02 1.99 16 Total: -1.00 -81.66 339.06 1.96 -79.71 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -2.01 Total: 10.62 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: 6.01 Total: 19.19 kcal Atomic # 7 Polarization: -127.09 SS G_CDS: -4.00 Total: -131.09 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.07 Total: -30.96 kcal Atomic # 14 Polarization: 50.50 SS G_CDS: 2.03 Total: 52.53 kcal Total: -81.66 1.96 -79.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592266430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 242.699 kcal (2) G-P(sol) polarization free energy of solvation -81.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds