Wall clock time and date at job start Tue Mar 31 2020 10:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31350 * 119.62920 * 2 1 4 4 C 1.32789 * 121.76744 * 180.02562 * 3 2 1 5 5 C 1.48040 * 119.59916 * 180.02562 * 4 3 2 6 6 O 1.21528 * 120.00127 * 179.97438 * 5 4 3 7 7 N 1.34777 * 120.00218 * 359.97438 * 5 4 3 8 8 C 1.46497 * 120.00431 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47283 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.46930 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47050 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99801 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99892 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00263 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99821 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46843 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47028 * 120.00188 * 15 13 11 18 18 H 1.48492 * 109.47000 * 240.00339 * 15 13 11 19 19 C 1.39436 * 120.80318 * 359.97438 * 4 3 2 20 20 C 1.38305 * 119.18284 * 0.02562 * 19 4 3 21 21 C 1.39667 * 119.63523 * 180.02562 * 2 1 3 22 22 C 1.48350 * 120.43699 * 0.25005 * 21 2 1 23 23 N 1.34093 * 126.68298 * 359.40803 * 22 21 2 24 24 N 1.28986 * 107.26530 * 179.83653 * 23 22 21 25 25 N 1.28728 * 108.95474 * 0.43068 * 24 23 22 26 26 H 0.96997 * 125.33552 * 179.71681 * 25 24 23 27 27 N 1.28870 * 109.33073 * 359.73116 * 25 24 23 28 28 H 1.09003 * 109.46581 * 269.97486 * 1 2 3 29 29 H 1.08994 * 109.47401 * 29.97387 * 1 2 3 30 30 H 1.09002 * 109.46981 * 149.98152 * 1 2 3 31 31 H 0.97008 * 119.99623 * 0.02562 * 7 5 4 32 32 H 1.09005 * 109.46948 * 300.00404 * 8 7 5 33 33 H 1.09001 * 109.46770 * 59.99948 * 8 7 5 34 34 H 1.08999 * 109.47147 * 299.99720 * 9 8 7 35 35 H 1.08995 * 109.47018 * 60.00578 * 9 8 7 36 36 H 1.08997 * 109.47243 * 300.00507 * 10 9 8 37 37 H 1.09001 * 109.46986 * 59.99989 * 10 9 8 38 38 H 0.97001 * 120.00438 * 179.97438 * 14 13 11 39 39 H 1.08000 * 120.41046 * 180.02562 * 19 4 3 40 40 H 1.07997 * 120.81083 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1564 1.1418 0.0000 4 6 3.4834 1.1913 -0.0005 5 6 4.1661 2.5049 0.0001 6 8 5.3801 2.5588 0.0001 7 7 3.4412 3.6411 0.0006 8 6 4.1167 4.9411 0.0018 9 6 3.0719 6.0588 0.0028 10 6 3.7775 7.4164 0.0034 11 6 2.7484 8.5173 0.0038 12 1 1.6964 8.2731 0.0041 13 6 3.1500 9.8363 0.0049 14 7 4.4311 10.1337 0.0050 15 14 1.8744 11.2010 0.0061 16 1 0.5136 10.6065 0.0063 17 1 2.0479 12.0396 1.2192 18 1 2.0477 12.0416 -1.2057 19 6 4.2416 0.0211 -0.0005 20 6 3.5950 -1.2015 -0.0005 21 6 2.1977 -1.2140 -0.0005 22 6 1.4575 -2.4997 -0.0067 23 7 0.1259 -2.6574 -0.0011 24 7 -0.1094 -3.9256 -0.0132 25 7 1.0114 -4.5588 -0.0169 26 1 1.1106 -5.5237 -0.0217 27 7 1.9810 -3.7099 -0.0129 28 1 -0.3632 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5141 31 1 2.4720 3.5981 0.0010 32 1 4.7399 5.0258 0.8921 33 1 4.7405 5.0271 -0.8879 34 1 2.4484 5.9742 -0.8872 35 1 2.4485 5.9726 0.8928 36 1 4.4013 7.5012 0.8931 37 1 4.4007 7.5023 -0.8868 38 1 4.7136 11.0616 0.0054 39 1 5.3206 0.0688 -0.0005 40 1 4.1562 -2.1241 -0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592348477.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:53 Heat of formation + Delta-G solvation = 114.802119 kcal Electronic energy + Delta-G solvation = -24297.185291 eV Core-core repulsion = 20535.881740 eV Total energy + Delta-G solvation = -3761.303551 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.98104 -40.95394 -39.07401 -35.49116 -35.21141 -34.44011 -33.41796 -33.24433 -32.02879 -30.99718 -28.23474 -27.18033 -25.81537 -24.91719 -23.38724 -22.84804 -22.19058 -20.75392 -20.22976 -19.79832 -17.85820 -17.67253 -17.10489 -16.65773 -16.22667 -15.58179 -15.39650 -14.83806 -14.70605 -14.59160 -14.41244 -13.97179 -13.77537 -13.41742 -13.08423 -12.60764 -12.55024 -12.33773 -12.26590 -11.96110 -11.81491 -11.76978 -11.59861 -11.27508 -10.90031 -10.73268 -10.56345 -10.39556 -10.14107 -9.87596 -9.84031 -9.38360 -9.21062 -9.08160 -8.76563 -8.35042 -5.99540 -4.02219 -0.14768 0.62918 0.81454 1.66946 1.71264 2.70098 3.02887 3.21737 3.32267 3.39794 3.43837 3.59382 3.61353 3.82983 4.24197 4.46519 4.56304 4.60225 4.69396 4.92113 4.97581 5.24727 5.36438 5.38554 5.50080 5.58257 5.69139 5.78018 5.79241 5.84185 5.94027 6.17816 6.21743 6.45523 6.62550 6.84076 7.02420 7.32773 7.61939 7.66569 7.72583 7.78773 7.99531 8.26794 8.41225 9.04700 9.61934 11.11776 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.027309 B = 0.002028 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.047195 B =13805.337373 C =14799.322762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.177 3.823 3 N -0.457 5.457 4 C 0.113 3.887 5 C 0.561 3.439 6 O -0.534 6.534 7 N -0.700 5.700 8 C 0.114 3.886 9 C -0.121 4.121 10 C 0.023 3.977 11 C -0.521 4.521 12 H 0.057 0.943 13 C 0.056 3.944 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.124 4.124 20 C -0.037 4.037 21 C -0.063 4.063 22 C 0.226 3.774 23 N -0.261 5.261 24 N -0.047 5.047 25 N -0.223 5.223 26 H 0.477 0.523 27 N -0.290 5.290 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.410 0.590 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.260 0.740 39 H 0.158 0.842 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.332 -32.687 -0.084 33.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.035 3.965 3 N -0.169 5.169 4 C -0.026 4.026 5 C 0.344 3.656 6 O -0.411 6.411 7 N -0.350 5.350 8 C -0.009 4.009 9 C -0.159 4.159 10 C -0.014 4.014 11 C -0.559 4.559 12 H 0.075 0.925 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.145 4.145 20 C -0.064 4.064 21 C -0.069 4.069 22 C -0.054 4.054 23 N -0.134 5.134 24 N -0.042 5.042 25 N -0.070 5.070 26 H 0.331 0.669 27 N -0.142 5.142 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.124 0.876 31 H 0.246 0.754 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.176 0.824 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.335 -32.039 -0.082 32.659 hybrid contribution -0.075 -0.389 0.034 0.398 sum -6.410 -32.428 -0.048 33.055 Atomic orbital electron populations 1.21206 0.86975 1.05294 1.04311 1.21460 0.97712 0.85958 0.91405 1.67579 1.08582 1.28763 1.11954 1.21542 0.89529 0.94841 0.96700 1.17810 0.86618 0.83263 0.77907 1.90803 1.12868 1.86929 1.50452 1.46108 1.11266 1.05844 1.71779 1.21765 0.96483 0.80352 1.02267 1.21899 0.97286 0.95599 1.01157 1.19041 0.95836 0.88874 0.97681 1.21252 0.93065 0.90925 1.50663 0.92524 1.25033 0.95237 0.98935 0.95325 1.69972 1.14176 1.18416 1.50751 0.86526 0.81783 0.82076 0.77556 1.19723 1.21039 1.21033 1.22062 1.02781 0.90874 0.98798 1.21611 0.92268 0.99160 0.93386 1.18258 0.92907 0.88243 1.07451 1.23335 0.88342 0.91918 1.01851 1.76175 1.13389 1.05884 1.17961 1.78977 1.10837 1.00237 1.14172 1.47729 1.01064 1.12509 1.45659 0.66859 1.74945 1.17818 0.99589 1.21831 0.89640 0.89931 0.87617 0.75395 0.91389 0.91376 0.92545 0.92545 0.96230 0.96229 0.93015 0.82437 0.83066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 9.36 36.01 0.34 -0.69 16 2 C 0.18 1.84 6.81 -82.26 -0.56 1.28 16 3 N -0.46 -5.51 9.43 -5.82 -0.05 -5.57 16 4 C 0.11 1.44 6.75 -82.99 -0.56 0.88 16 5 C 0.56 8.71 7.81 -12.24 -0.10 8.62 16 6 O -0.53 -9.72 16.31 5.34 0.09 -9.63 16 7 N -0.70 -10.79 5.54 -61.19 -0.34 -11.13 16 8 C 0.11 2.02 5.67 -4.04 -0.02 2.00 16 9 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 10 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 11 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 12 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 14 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 15 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 C -0.12 -1.28 9.62 -39.11 -0.38 -1.66 16 20 C -0.04 -0.31 9.82 -39.00 -0.38 -0.69 16 21 C -0.06 -0.59 5.90 -104.64 -0.62 -1.21 16 22 C 0.23 1.97 7.79 -156.27 -1.22 0.75 16 23 N -0.26 -2.32 9.10 32.14 0.29 -2.03 16 24 N -0.05 -0.34 13.47 60.35 0.81 0.47 16 25 N -0.22 -1.02 7.90 60.35 0.48 -0.54 16 26 H 0.48 -0.12 8.96 -340.37 -3.05 -3.17 16 27 N -0.29 -2.03 12.15 32.16 0.39 -1.64 16 28 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.11 0.89 5.14 -51.93 -0.27 0.63 16 31 H 0.41 5.68 7.79 -40.82 -0.32 5.36 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.16 1.50 7.63 -52.49 -0.40 1.10 16 40 H 0.15 0.92 7.95 -52.49 -0.42 0.50 16 LS Contribution 351.05 15.07 5.29 5.29 Total: -1.00 -34.30 351.05 -8.89 -43.19 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -7.38 Total: -2.61 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -4.19 Total: -6.24 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 2.31 Total: -46.59 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.30 -8.89 -43.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592348477.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.990 kcal (2) G-P(sol) polarization free energy of solvation -34.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds