Wall clock time and date at job start Tue Mar 31 2020 10:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31350 * 119.62920 * 2 1 4 4 C 1.32789 * 121.76744 * 180.02562 * 3 2 1 5 5 C 1.48040 * 119.59916 * 180.02562 * 4 3 2 6 6 O 1.21528 * 120.00127 * 179.97438 * 5 4 3 7 7 N 1.34777 * 120.00218 * 359.97438 * 5 4 3 8 8 C 1.46497 * 120.00431 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47283 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.46930 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47050 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99801 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99892 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00263 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99821 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46843 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47028 * 120.00188 * 15 13 11 18 18 H 1.48492 * 109.47000 * 240.00339 * 15 13 11 19 19 C 1.39436 * 120.80318 * 359.97438 * 4 3 2 20 20 C 1.38305 * 119.18284 * 0.02562 * 19 4 3 21 21 C 1.39667 * 119.63523 * 180.02562 * 2 1 3 22 22 C 1.48350 * 120.43699 * 0.25005 * 21 2 1 23 23 N 1.34093 * 126.68298 * 359.40803 * 22 21 2 24 24 N 1.28986 * 107.26530 * 179.83653 * 23 22 21 25 25 N 1.28728 * 108.95474 * 0.43068 * 24 23 22 26 26 H 0.96997 * 125.33552 * 179.71681 * 25 24 23 27 27 N 1.28870 * 109.33073 * 359.73116 * 25 24 23 28 28 H 1.09003 * 109.46581 * 269.97486 * 1 2 3 29 29 H 1.08994 * 109.47401 * 29.97387 * 1 2 3 30 30 H 1.09002 * 109.46981 * 149.98152 * 1 2 3 31 31 H 0.97008 * 119.99623 * 0.02562 * 7 5 4 32 32 H 1.09005 * 109.46948 * 300.00404 * 8 7 5 33 33 H 1.09001 * 109.46770 * 59.99948 * 8 7 5 34 34 H 1.08999 * 109.47147 * 299.99720 * 9 8 7 35 35 H 1.08995 * 109.47018 * 60.00578 * 9 8 7 36 36 H 1.08997 * 109.47243 * 300.00507 * 10 9 8 37 37 H 1.09001 * 109.46986 * 59.99989 * 10 9 8 38 38 H 0.97001 * 120.00438 * 179.97438 * 14 13 11 39 39 H 1.08000 * 120.41046 * 180.02562 * 19 4 3 40 40 H 1.07997 * 120.81083 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1564 1.1418 0.0000 4 6 3.4834 1.1913 -0.0005 5 6 4.1661 2.5049 0.0001 6 8 5.3801 2.5588 0.0001 7 7 3.4412 3.6411 0.0006 8 6 4.1167 4.9411 0.0018 9 6 3.0719 6.0588 0.0028 10 6 3.7775 7.4164 0.0034 11 6 2.7484 8.5173 0.0038 12 1 1.6964 8.2731 0.0041 13 6 3.1500 9.8363 0.0049 14 7 4.4311 10.1337 0.0050 15 14 1.8744 11.2010 0.0061 16 1 0.5136 10.6065 0.0063 17 1 2.0479 12.0396 1.2192 18 1 2.0477 12.0416 -1.2057 19 6 4.2416 0.0211 -0.0005 20 6 3.5950 -1.2015 -0.0005 21 6 2.1977 -1.2140 -0.0005 22 6 1.4575 -2.4997 -0.0067 23 7 0.1259 -2.6574 -0.0011 24 7 -0.1094 -3.9256 -0.0132 25 7 1.0114 -4.5588 -0.0169 26 1 1.1106 -5.5237 -0.0217 27 7 1.9810 -3.7099 -0.0129 28 1 -0.3632 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5141 31 1 2.4720 3.5981 0.0010 32 1 4.7399 5.0258 0.8921 33 1 4.7405 5.0271 -0.8879 34 1 2.4484 5.9742 -0.8872 35 1 2.4485 5.9726 0.8928 36 1 4.4013 7.5012 0.8931 37 1 4.4007 7.5023 -0.8868 38 1 4.7136 11.0616 0.0054 39 1 5.3206 0.0688 -0.0005 40 1 4.1562 -2.1241 -0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592348477.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:53 Heat of formation + Delta-G solvation = 90.162102 kcal Electronic energy + Delta-G solvation = -24298.253763 eV Core-core repulsion = 20535.881740 eV Total energy + Delta-G solvation = -3762.372023 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.53111 -41.85666 -40.24205 -37.03354 -35.86198 -35.28476 -34.99642 -34.10470 -33.21162 -32.37076 -29.09701 -28.70223 -26.89210 -25.58398 -24.87632 -23.64623 -23.12689 -22.29988 -21.56755 -20.33324 -19.00868 -18.48890 -18.21320 -17.85102 -17.34905 -16.85242 -16.70204 -16.36689 -15.88237 -15.63354 -15.38404 -15.07947 -14.87952 -14.39776 -14.16912 -13.74884 -13.73956 -13.57691 -13.30983 -13.24884 -12.93490 -12.77054 -12.55182 -12.53017 -12.34624 -12.28884 -11.88968 -11.72208 -11.67428 -11.35502 -11.16919 -10.86776 -10.71278 -10.54379 -10.22628 -9.89135 -8.18127 -6.29085 -0.94517 0.06362 0.08670 0.92960 1.35845 1.42804 1.42901 1.56352 1.69932 1.98465 2.43130 2.46490 2.67582 2.93653 3.00200 3.15613 3.52104 3.67641 3.85177 3.98909 4.14050 4.20202 4.21902 4.34161 4.50937 4.56440 4.71460 4.81497 4.86586 4.94939 4.96991 5.04458 5.17974 5.20865 5.36654 5.51470 5.54025 5.58300 5.72619 5.85957 6.23776 6.33274 6.65664 6.88147 7.05644 7.06365 7.40185 8.94055 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.027309 B = 0.002028 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.047195 B =13805.337373 C =14799.322762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.166 3.834 3 N -0.469 5.469 4 C 0.090 3.910 5 C 0.562 3.438 6 O -0.566 6.566 7 N -0.696 5.696 8 C 0.127 3.873 9 C -0.103 4.103 10 C 0.024 3.976 11 C -0.540 4.540 12 H 0.065 0.935 13 C -0.004 4.004 14 N -0.934 5.934 15 Si 0.967 3.033 16 H -0.259 1.259 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.119 4.119 20 C -0.025 4.025 21 C -0.055 4.055 22 C 0.211 3.789 23 N -0.278 5.278 24 N -0.054 5.054 25 N -0.195 5.195 26 H 0.496 0.504 27 N -0.284 5.284 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.419 0.581 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.066 0.934 36 H -0.005 1.005 37 H -0.005 1.005 38 H 0.263 0.737 39 H 0.164 0.836 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.030 -34.849 -0.071 35.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.023 3.977 3 N -0.181 5.181 4 C -0.048 4.048 5 C 0.347 3.653 6 O -0.446 6.446 7 N -0.346 5.346 8 C 0.004 3.996 9 C -0.141 4.141 10 C -0.014 4.014 11 C -0.578 4.578 12 H 0.083 0.917 13 C -0.201 4.201 14 N -0.574 5.574 15 Si 0.791 3.209 16 H -0.183 1.183 17 H -0.206 1.206 18 H -0.205 1.205 19 C -0.140 4.140 20 C -0.052 4.052 21 C -0.060 4.060 22 C -0.069 4.069 23 N -0.150 5.150 24 N -0.048 5.048 25 N -0.046 5.046 26 H 0.356 0.644 27 N -0.136 5.136 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.127 0.873 31 H 0.256 0.744 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.013 0.987 37 H 0.013 0.987 38 H 0.072 0.928 39 H 0.182 0.818 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -8.070 -34.240 -0.069 35.179 hybrid contribution 0.448 0.082 0.030 0.456 sum -7.622 -34.159 -0.039 34.999 Atomic orbital electron populations 1.21210 0.85910 1.05461 1.04697 1.21729 0.98439 0.85918 0.91567 1.67476 1.08301 1.29860 1.12478 1.21149 0.90104 0.93820 0.99765 1.18207 0.86305 0.84122 0.76656 1.90775 1.14292 1.87570 1.51914 1.45919 1.11642 1.05042 1.71992 1.21382 0.95691 0.81146 1.01405 1.21609 0.97244 0.93155 1.02092 1.18947 0.95316 0.91821 0.95297 1.21711 0.93891 0.91903 1.50311 0.91679 1.26011 0.97405 1.01861 0.94837 1.70110 1.16396 1.19147 1.51762 0.85370 0.79346 0.78522 0.77625 1.18326 1.20558 1.20544 1.22158 1.03034 0.90741 0.98047 1.21854 0.92020 0.99414 0.91903 1.18367 0.93336 0.88406 1.05922 1.23215 0.88447 0.92081 1.03195 1.76155 1.13591 1.06693 1.18574 1.78942 1.11415 0.99913 1.14565 1.47806 1.00055 1.13357 1.43382 0.64438 1.74905 1.18189 0.99283 1.21270 0.89097 0.89847 0.87311 0.74352 0.92362 0.92346 0.91519 0.91522 0.98676 0.98673 0.92823 0.81844 0.80216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.85 9.36 71.24 0.67 -1.18 16 2 C 0.17 3.26 6.81 42.98 0.29 3.56 16 3 N -0.47 -11.02 9.43 -172.33 -1.62 -12.65 16 4 C 0.09 2.26 6.75 41.89 0.28 2.54 16 5 C 0.56 17.64 7.81 86.84 0.68 18.32 16 6 O -0.57 -21.06 16.31 -3.80 -0.06 -21.12 16 7 N -0.70 -21.57 5.54 -465.79 -2.58 -24.15 16 8 C 0.13 4.63 5.67 86.38 0.49 5.12 16 9 C -0.10 -4.11 5.27 30.59 0.16 -3.95 16 10 C 0.02 1.26 4.97 29.85 0.15 1.40 16 11 C -0.54 -30.54 9.11 25.60 0.23 -30.31 16 12 H 0.06 3.49 7.74 -2.91 -0.02 3.46 16 13 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 14 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 15 Si 0.97 44.33 29.54 68.60 2.03 46.35 16 16 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 19 C -0.12 -2.32 9.62 22.57 0.22 -2.10 16 20 C -0.02 -0.36 9.82 22.65 0.22 -0.14 16 21 C -0.05 -0.93 5.90 -19.88 -0.12 -1.04 16 22 C 0.21 3.21 7.79 137.32 1.07 4.28 16 23 N -0.28 -4.40 9.10 -52.21 -0.48 -4.88 16 24 N -0.05 -0.65 13.47 37.02 0.50 -0.15 16 25 N -0.19 -1.22 7.90 37.02 0.29 -0.93 16 26 H 0.50 -1.79 8.96 -347.54 -3.12 -4.91 16 27 N -0.28 -3.16 12.15 -52.16 -0.63 -3.79 16 28 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.11 1.70 5.14 -2.39 -0.01 1.69 16 31 H 0.42 11.46 7.79 -92.70 -0.72 10.74 16 32 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 33 H 0.06 2.23 8.14 -2.39 -0.02 2.22 16 34 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 36 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 37 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 38 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 39 H 0.16 2.95 7.63 -2.91 -0.02 2.93 16 40 H 0.18 1.58 7.95 -2.91 -0.02 1.56 16 Total: -1.00 -74.36 351.05 -0.19 -74.55 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -2.72 Total: 7.03 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 4.81 Total: -3.26 kcal Atomic # 7 Polarization: -99.32 SS G_CDS: -4.24 Total: -103.56 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.06 Total: -21.12 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -74.36 -0.19 -74.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592348477.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.716 kcal (2) G-P(sol) polarization free energy of solvation -74.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds