Wall clock time and date at job start Tue Mar 31 2020 10:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31784 * 119.66121 * 2 1 4 4 C 1.32389 * 121.76137 * 179.97438 * 3 2 1 5 5 N 1.39328 * 119.56958 * 180.02562 * 4 3 2 6 6 C 1.34778 * 119.99912 * 354.89632 * 5 4 3 7 7 O 1.21276 * 119.99866 * 5.08223 * 6 5 4 8 8 C 1.50696 * 119.99750 * 185.08756 * 6 5 4 9 9 C 1.53008 * 109.47021 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.46881 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.46989 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99797 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00293 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99418 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00024 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47052 * 90.00269 * 15 13 11 17 17 H 1.48501 * 109.46948 * 209.99899 * 15 13 11 18 18 H 1.48498 * 109.47212 * 329.99977 * 15 13 11 19 19 C 1.39135 * 120.86060 * 0.02562 * 4 3 2 20 20 C 1.38121 * 119.22163 * 359.97438 * 19 4 3 21 21 C 1.39177 * 119.65963 * 179.97438 * 2 1 3 22 22 C 1.48429 * 120.45701 * 0.27774 * 21 2 1 23 23 N 1.34063 * 126.67620 * 359.40613 * 22 21 2 24 24 N 1.28985 * 107.26591 * 179.86931 * 23 22 21 25 25 N 1.28721 * 108.94728 * 0.39847 * 24 23 22 26 26 H 0.97000 * 125.33714 * 179.76259 * 25 24 23 27 27 N 1.28866 * 109.32353 * 359.74663 * 25 24 23 28 28 H 1.08997 * 109.47047 * 270.00464 * 1 2 3 29 29 H 1.09000 * 109.46802 * 30.00209 * 1 2 3 30 30 H 1.08996 * 109.46972 * 150.00353 * 1 2 3 31 31 H 0.96995 * 120.00186 * 174.89076 * 5 4 3 32 32 H 1.09005 * 109.47399 * 299.99557 * 8 6 5 33 33 H 1.09001 * 109.47401 * 59.99971 * 8 6 5 34 34 H 1.08991 * 109.47015 * 299.99957 * 9 8 6 35 35 H 1.09001 * 109.46857 * 59.99883 * 9 8 6 36 36 H 1.08997 * 109.47949 * 300.00195 * 10 9 8 37 37 H 1.09001 * 109.47178 * 60.00438 * 10 9 8 38 38 H 0.97003 * 119.99615 * 180.02562 * 14 13 11 39 39 H 1.08002 * 120.38570 * 180.02562 * 19 4 3 40 40 H 1.08009 * 120.80255 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1591 1.1452 0.0000 4 6 3.4821 1.1937 0.0005 5 7 4.1248 2.4299 0.0010 6 6 3.4042 3.5641 -0.1028 7 8 2.1924 3.5146 -0.1039 8 6 4.1042 4.8936 -0.2178 9 6 3.0636 6.0105 -0.3221 10 6 3.7743 7.3604 -0.4382 11 6 2.7495 8.4605 -0.5416 12 1 1.6965 8.2207 -0.5257 13 6 3.1560 9.7729 -0.6566 14 7 4.4382 10.0647 -0.6764 15 14 1.8856 11.1364 -0.7840 16 1 1.5423 11.6220 0.5768 17 1 2.4412 12.2574 -1.5840 18 1 0.6634 10.6139 -1.4461 19 6 4.2391 0.0263 0.0005 20 6 3.5945 -1.1953 0.0005 21 6 2.1957 -1.2094 0.0005 22 6 1.4561 -2.4964 -0.0051 23 7 0.1249 -2.6550 0.0001 24 7 -0.1095 -3.9233 -0.0106 25 7 1.0117 -4.5556 -0.0137 26 1 1.1117 -5.5204 -0.0181 27 7 1.9805 -3.7058 -0.0104 28 1 -0.3633 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 5.0908 2.4743 0.0762 32 1 4.7241 5.0554 0.6642 33 1 4.7319 4.8980 -1.1089 34 1 2.4441 5.8486 -1.2041 35 1 2.4355 6.0063 0.5688 36 1 4.3936 7.5222 0.4440 37 1 4.4026 7.3649 -1.3289 38 1 4.7242 10.9881 -0.7569 39 1 5.3180 0.0748 0.0014 40 1 4.1570 -2.1174 0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592377411.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:28 Heat of formation + Delta-G solvation = 127.484303 kcal Electronic energy + Delta-G solvation = -24515.605849 eV Core-core repulsion = 20754.852238 eV Total energy + Delta-G solvation = -3760.753611 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.77655 -40.97610 -39.18881 -35.67287 -34.57211 -34.18645 -33.91311 -32.86893 -32.06733 -30.97070 -28.25786 -27.65780 -25.36263 -24.66321 -23.64689 -22.83506 -22.05154 -20.71074 -19.89185 -19.49747 -17.74806 -17.47694 -17.06012 -16.77780 -16.14701 -15.75709 -15.62883 -14.70414 -14.55357 -14.40475 -14.23525 -13.74153 -13.53747 -13.44499 -12.83219 -12.52332 -12.47392 -12.27640 -12.12504 -11.83256 -11.82838 -11.61639 -11.34067 -11.04456 -10.80172 -10.63714 -10.52861 -10.37604 -10.13402 -9.90831 -9.67621 -9.39922 -9.15631 -8.95308 -8.31773 -8.30509 -5.97010 -3.98190 0.33344 0.85194 1.02188 1.89837 2.00889 2.76369 2.85388 3.36173 3.36948 3.41957 3.47102 3.67881 3.84936 4.13688 4.49803 4.50508 4.66271 4.81977 4.91165 5.11009 5.12265 5.33809 5.39277 5.51119 5.64420 5.65345 5.71248 5.75009 5.92724 5.94991 6.02368 6.19668 6.28605 6.57235 6.70496 6.90362 7.10745 7.15515 7.70965 7.82219 7.83107 7.90515 8.03471 8.34787 8.47414 9.08807 9.65803 11.14449 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.033752 B = 0.002042 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.374971 B =13709.370389 C =14497.566371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.217 3.783 3 N -0.477 5.477 4 C 0.395 3.605 5 N -0.666 5.666 6 C 0.499 3.501 7 O -0.460 6.460 8 C -0.136 4.136 9 C -0.096 4.096 10 C 0.020 3.980 11 C -0.517 4.517 12 H 0.056 0.944 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.225 4.225 20 C -0.003 4.003 21 C -0.126 4.126 22 C 0.240 3.760 23 N -0.268 5.268 24 N -0.052 5.052 25 N -0.228 5.228 26 H 0.474 0.526 27 N -0.302 5.302 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.419 0.581 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.144 0.856 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.947 -31.844 1.818 31.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.075 3.925 3 N -0.192 5.192 4 C 0.162 3.838 5 N -0.312 5.312 6 C 0.286 3.714 7 O -0.327 6.327 8 C -0.176 4.176 9 C -0.134 4.134 10 C -0.017 4.017 11 C -0.556 4.556 12 H 0.075 0.925 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.249 4.249 20 C -0.030 4.030 21 C -0.134 4.134 22 C -0.040 4.040 23 N -0.140 5.140 24 N -0.046 5.046 25 N -0.074 5.074 26 H 0.329 0.671 27 N -0.154 5.154 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.123 0.877 31 H 0.256 0.744 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.161 0.839 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.830 -31.165 1.779 31.227 hybrid contribution 1.090 -0.347 0.007 1.143 sum 0.260 -31.512 1.786 31.564 Atomic orbital electron populations 1.21195 0.87438 1.05062 1.04078 1.21388 0.97528 0.85514 0.88096 1.67747 1.06975 1.27620 1.16863 1.18797 0.89041 0.85854 0.90138 1.44118 1.11364 1.03750 1.71993 1.21680 0.88588 0.85455 0.75687 1.90803 1.13515 1.86048 1.42347 1.21904 1.00966 0.90737 1.03981 1.21480 0.96254 0.93838 1.01853 1.19131 0.95731 0.89690 0.97115 1.21268 0.93263 0.91395 1.49655 0.92531 1.25022 0.95236 0.98878 0.95420 1.69962 1.14024 1.18759 1.50993 0.86586 0.81736 0.81621 0.78043 1.20684 1.21288 1.19814 1.21374 1.01207 0.91057 1.11255 1.21269 0.92224 0.98287 0.91240 1.17947 0.92787 0.87995 1.14629 1.23361 0.88137 0.91911 1.00554 1.76163 1.13703 1.05665 1.18515 1.78944 1.10934 1.00438 1.14327 1.47682 1.01181 1.12359 1.46135 0.67148 1.74904 1.17784 0.99630 1.23035 0.89826 0.89982 0.87715 0.74433 0.89007 0.88963 0.92514 0.92512 0.96554 0.96551 0.93088 0.83859 0.83674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 9.36 36.00 0.34 -1.09 16 2 C 0.22 2.83 6.81 -82.27 -0.56 2.27 16 3 N -0.48 -7.27 7.77 -8.35 -0.06 -7.33 16 4 C 0.39 4.96 7.42 -154.71 -1.15 3.81 16 5 N -0.67 -7.76 5.38 -11.41 -0.06 -7.82 16 6 C 0.50 7.86 7.79 -10.99 -0.09 7.77 16 7 O -0.46 -9.23 14.24 5.56 0.08 -9.15 16 8 C -0.14 -2.12 5.70 -27.88 -0.16 -2.28 16 9 C -0.10 -2.03 4.44 -26.73 -0.12 -2.15 16 10 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 11 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 12 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 15 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 18 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 19 C -0.23 -2.00 9.92 -39.29 -0.39 -2.39 16 20 C 0.00 -0.02 9.82 -39.00 -0.38 -0.41 16 21 C -0.13 -1.38 5.89 -104.73 -0.62 -2.00 16 22 C 0.24 2.48 7.79 -156.29 -1.22 1.26 16 23 N -0.27 -2.86 9.10 32.15 0.29 -2.57 16 24 N -0.05 -0.45 13.47 60.35 0.81 0.37 16 25 N -0.23 -1.33 7.90 60.35 0.48 -0.85 16 26 H 0.47 0.42 8.96 -340.38 -3.05 -2.63 16 27 N -0.30 -2.49 12.15 32.17 0.39 -2.10 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.10 1.17 5.13 -51.93 -0.27 0.90 16 31 H 0.42 3.05 8.70 -40.82 -0.36 2.69 16 32 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 35 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.15 0.93 7.96 -52.48 -0.42 0.51 16 LS Contribution 348.56 15.07 5.25 5.25 Total: -1.00 -37.25 348.56 -9.43 -46.68 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -7.43 Total: -4.74 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -4.89 Total: -8.54 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: 2.58 Total: -46.54 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.08 Total: -9.15 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -37.25 -9.43 -46.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592377411.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.161 kcal (2) G-P(sol) polarization free energy of solvation -37.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds