Wall clock time and date at job start Tue Mar 31 2020 10:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31784 * 119.66121 * 2 1 4 4 C 1.32389 * 121.76137 * 179.97438 * 3 2 1 5 5 N 1.39328 * 119.56958 * 180.02562 * 4 3 2 6 6 C 1.34778 * 119.99912 * 354.89632 * 5 4 3 7 7 O 1.21276 * 119.99866 * 5.08223 * 6 5 4 8 8 C 1.50696 * 119.99750 * 185.08756 * 6 5 4 9 9 C 1.53008 * 109.47021 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.46881 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.46989 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99797 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00293 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99418 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00024 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47052 * 90.00269 * 15 13 11 17 17 H 1.48501 * 109.46948 * 209.99899 * 15 13 11 18 18 H 1.48498 * 109.47212 * 329.99977 * 15 13 11 19 19 C 1.39135 * 120.86060 * 0.02562 * 4 3 2 20 20 C 1.38121 * 119.22163 * 359.97438 * 19 4 3 21 21 C 1.39177 * 119.65963 * 179.97438 * 2 1 3 22 22 C 1.48429 * 120.45701 * 0.27774 * 21 2 1 23 23 N 1.34063 * 126.67620 * 359.40613 * 22 21 2 24 24 N 1.28985 * 107.26591 * 179.86931 * 23 22 21 25 25 N 1.28721 * 108.94728 * 0.39847 * 24 23 22 26 26 H 0.97000 * 125.33714 * 179.76259 * 25 24 23 27 27 N 1.28866 * 109.32353 * 359.74663 * 25 24 23 28 28 H 1.08997 * 109.47047 * 270.00464 * 1 2 3 29 29 H 1.09000 * 109.46802 * 30.00209 * 1 2 3 30 30 H 1.08996 * 109.46972 * 150.00353 * 1 2 3 31 31 H 0.96995 * 120.00186 * 174.89076 * 5 4 3 32 32 H 1.09005 * 109.47399 * 299.99557 * 8 6 5 33 33 H 1.09001 * 109.47401 * 59.99971 * 8 6 5 34 34 H 1.08991 * 109.47015 * 299.99957 * 9 8 6 35 35 H 1.09001 * 109.46857 * 59.99883 * 9 8 6 36 36 H 1.08997 * 109.47949 * 300.00195 * 10 9 8 37 37 H 1.09001 * 109.47178 * 60.00438 * 10 9 8 38 38 H 0.97003 * 119.99615 * 180.02562 * 14 13 11 39 39 H 1.08002 * 120.38570 * 180.02562 * 19 4 3 40 40 H 1.08009 * 120.80255 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1591 1.1452 0.0000 4 6 3.4821 1.1937 0.0005 5 7 4.1248 2.4299 0.0010 6 6 3.4042 3.5641 -0.1028 7 8 2.1924 3.5146 -0.1039 8 6 4.1042 4.8936 -0.2178 9 6 3.0636 6.0105 -0.3221 10 6 3.7743 7.3604 -0.4382 11 6 2.7495 8.4605 -0.5416 12 1 1.6965 8.2207 -0.5257 13 6 3.1560 9.7729 -0.6566 14 7 4.4382 10.0647 -0.6764 15 14 1.8856 11.1364 -0.7840 16 1 1.5423 11.6220 0.5768 17 1 2.4412 12.2574 -1.5840 18 1 0.6634 10.6139 -1.4461 19 6 4.2391 0.0263 0.0005 20 6 3.5945 -1.1953 0.0005 21 6 2.1957 -1.2094 0.0005 22 6 1.4561 -2.4964 -0.0051 23 7 0.1249 -2.6550 0.0001 24 7 -0.1095 -3.9233 -0.0106 25 7 1.0117 -4.5556 -0.0137 26 1 1.1117 -5.5204 -0.0181 27 7 1.9805 -3.7058 -0.0104 28 1 -0.3633 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 5.0908 2.4743 0.0762 32 1 4.7241 5.0554 0.6642 33 1 4.7319 4.8980 -1.1089 34 1 2.4441 5.8486 -1.2041 35 1 2.4355 6.0063 0.5688 36 1 4.3936 7.5222 0.4440 37 1 4.4026 7.3649 -1.3289 38 1 4.7242 10.9881 -0.7569 39 1 5.3180 0.0748 0.0014 40 1 4.1570 -2.1174 0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592377411.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:27 Heat of formation + Delta-G solvation = 101.271593 kcal Electronic energy + Delta-G solvation = -24516.742517 eV Core-core repulsion = 20754.852238 eV Total energy + Delta-G solvation = -3761.890279 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.44700 -41.91468 -40.30211 -36.69318 -36.02993 -35.31285 -34.72382 -34.00983 -33.64753 -31.91418 -29.82997 -28.69780 -26.50639 -25.62118 -24.96419 -23.75607 -22.96158 -22.17725 -21.20025 -20.21553 -18.82527 -18.40573 -18.13732 -17.97207 -17.48051 -16.91876 -16.71254 -16.41521 -15.78549 -15.39935 -15.22151 -14.88016 -14.75872 -14.32044 -14.24361 -13.74287 -13.68183 -13.53209 -13.26814 -13.08021 -12.89159 -12.65091 -12.51863 -12.50801 -12.40066 -12.30508 -11.81856 -11.53708 -11.47389 -11.30010 -11.27230 -11.08481 -10.71646 -10.52496 -10.11086 -9.17517 -8.19105 -6.28241 -0.47351 0.17240 0.25896 1.17958 1.40318 1.41058 1.44430 1.52692 1.73526 1.83597 2.42583 2.64124 2.81291 3.13831 3.13948 3.23657 3.73002 3.84012 3.95054 4.16206 4.17009 4.29385 4.30964 4.42376 4.57411 4.72127 4.76786 4.83143 4.94975 4.99269 5.09370 5.11937 5.16178 5.22635 5.35667 5.56133 5.64741 5.71472 5.78259 5.89115 6.19854 6.30604 6.86912 6.94616 7.14602 7.33168 7.40067 8.92164 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.033752 B = 0.002042 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.374971 B =13709.370389 C =14497.566371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.189 3.811 3 N -0.522 5.522 4 C 0.364 3.636 5 N -0.647 5.647 6 C 0.504 3.496 7 O -0.514 6.514 8 C -0.125 4.125 9 C -0.084 4.084 10 C 0.026 3.974 11 C -0.547 4.547 12 H 0.049 0.951 13 C 0.003 3.997 14 N -0.927 5.927 15 Si 0.960 3.040 16 H -0.272 1.272 17 H -0.277 1.277 18 H -0.270 1.270 19 C -0.198 4.198 20 C 0.001 3.999 21 C -0.120 4.120 22 C 0.224 3.776 23 N -0.293 5.293 24 N -0.059 5.059 25 N -0.197 5.197 26 H 0.495 0.505 27 N -0.290 5.290 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.440 0.560 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.039 0.961 35 H 0.040 0.960 36 H 0.004 0.996 37 H 0.003 0.997 38 H 0.264 0.736 39 H 0.188 0.812 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.614 -34.007 1.907 34.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.047 3.953 3 N -0.238 5.238 4 C 0.132 3.868 5 N -0.296 5.296 6 C 0.292 3.708 7 O -0.386 6.386 8 C -0.165 4.165 9 C -0.122 4.122 10 C -0.011 4.011 11 C -0.585 4.585 12 H 0.067 0.933 13 C -0.195 4.195 14 N -0.567 5.567 15 Si 0.784 3.216 16 H -0.198 1.198 17 H -0.203 1.203 18 H -0.195 1.195 19 C -0.221 4.221 20 C -0.026 4.026 21 C -0.128 4.128 22 C -0.056 4.056 23 N -0.165 5.165 24 N -0.054 5.054 25 N -0.049 5.049 26 H 0.354 0.646 27 N -0.143 5.143 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.129 0.871 31 H 0.282 0.718 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.073 0.927 39 H 0.205 0.795 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 0.871 -33.393 1.874 33.457 hybrid contribution 0.611 0.136 -0.016 0.626 sum 1.482 -33.257 1.857 33.342 Atomic orbital electron populations 1.21116 0.87808 1.04317 1.03811 1.21422 0.97700 0.86058 0.90077 1.67566 1.09015 1.29207 1.17966 1.19119 0.88818 0.86885 0.92022 1.43707 1.12183 1.02623 1.71102 1.21524 0.87894 0.86426 0.74944 1.90796 1.15680 1.86880 1.45209 1.21712 0.99470 0.88968 1.06316 1.21176 0.96955 0.93857 1.00227 1.19019 0.94994 0.91378 0.95724 1.21695 0.93687 0.92980 1.50143 0.93260 1.25877 0.97384 1.01355 0.94853 1.70058 1.15710 1.19584 1.51398 0.85531 0.79111 0.78492 0.78429 1.19770 1.20269 1.19461 1.21761 1.03020 0.89335 1.07941 1.21664 0.91321 0.99578 0.90083 1.18066 0.93912 0.87511 1.13275 1.23326 0.88150 0.92323 1.01798 1.76128 1.14293 1.06630 1.19444 1.78903 1.11587 1.00032 1.14841 1.47764 1.00163 1.13254 1.43676 0.64614 1.74852 1.17970 0.99117 1.22371 0.89964 0.91927 0.87090 0.71827 0.86529 0.86624 0.94241 0.94156 0.97768 0.97815 0.92692 0.79484 0.80464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.89 9.36 71.23 0.67 -2.22 16 2 C 0.19 5.05 6.81 42.79 0.29 5.34 16 3 N -0.52 -16.28 7.77 -180.34 -1.40 -17.68 16 4 C 0.36 8.67 7.42 132.96 0.99 9.66 16 5 N -0.65 -14.05 5.38 -308.41 -1.66 -15.71 16 6 C 0.50 15.81 7.79 87.66 0.68 16.50 16 7 O -0.51 -21.48 14.24 -3.02 -0.04 -21.52 16 8 C -0.13 -3.81 5.70 29.85 0.17 -3.64 16 9 C -0.08 -3.65 4.44 30.60 0.14 -3.51 16 10 C 0.03 1.36 4.97 29.85 0.15 1.51 16 11 C -0.55 -32.25 9.11 25.60 0.23 -32.02 16 12 H 0.05 2.90 7.74 -2.91 -0.02 2.87 16 13 C 0.00 0.20 5.46 84.65 0.46 0.66 16 14 N -0.93 -56.07 13.29 21.45 0.28 -55.78 16 15 Si 0.96 45.52 29.54 68.60 2.03 47.54 16 16 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 18 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 19 C -0.20 -2.84 9.92 22.46 0.22 -2.61 16 20 C 0.00 0.01 9.82 22.64 0.22 0.23 16 21 C -0.12 -2.49 5.89 -19.93 -0.12 -2.61 16 22 C 0.22 4.31 7.79 137.36 1.07 5.38 16 23 N -0.29 -6.09 9.10 -52.19 -0.47 -6.57 16 24 N -0.06 -0.94 13.47 37.02 0.50 -0.44 16 25 N -0.20 -1.83 7.90 37.02 0.29 -1.54 16 26 H 0.49 -0.53 8.96 -347.55 -3.12 -3.65 16 27 N -0.29 -4.04 12.15 -52.14 -0.63 -4.67 16 28 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.11 2.62 5.13 -2.39 -0.01 2.61 16 31 H 0.44 5.07 8.70 -92.71 -0.81 4.26 16 32 H 0.12 2.99 8.14 -2.38 -0.02 2.97 16 33 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.04 1.81 8.10 -2.39 -0.02 1.79 16 35 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 36 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 38 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 39 H 0.19 0.97 8.06 -2.91 -0.02 0.94 16 40 H 0.18 1.43 7.96 -2.91 -0.02 1.41 16 Total: -1.00 -84.21 348.56 1.26 -82.95 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -2.81 Total: 0.75 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 5.18 Total: -7.33 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -3.10 Total: -102.39 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.04 Total: -21.52 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -84.21 1.26 -82.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592377411.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.226 kcal (2) G-P(sol) polarization free energy of solvation -84.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds