Wall clock time and date at job start Tue Mar 31 2020 11:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30459 * 119.71252 * 2 1 4 4 N 1.28285 * 122.89830 * 180.29882 * 3 2 1 5 5 C 1.46496 * 119.05938 * 179.74331 * 4 3 2 6 6 C 1.53004 * 109.47045 * 268.11151 * 5 4 3 7 7 C 1.50695 * 115.54933 * 55.62740 * 6 5 4 8 8 H 1.08001 * 120.00070 * 219.50077 * 7 6 5 9 9 C 1.37874 * 120.00251 * 39.50019 * 7 6 5 10 10 N 1.31517 * 119.99955 * 10.25626 * 9 7 6 11 11 Si 1.86799 * 120.00246 * 190.25253 * 9 7 6 12 12 H 1.48493 * 109.47353 * 180.02562 * 11 9 7 13 13 H 1.48505 * 109.47227 * 300.00450 * 11 9 7 14 14 H 1.48502 * 109.46986 * 59.99792 * 11 9 7 15 15 C 1.53001 * 117.51584 * 201.32549 * 6 5 4 16 16 C 1.53002 * 117.49796 * 269.95350 * 6 5 4 17 17 C 1.34687 * 121.87970 * 359.46265 * 4 3 2 18 18 O 1.21991 * 120.44780 * 180.28018 * 17 4 3 19 19 C 1.42186 * 119.10329 * 0.25706 * 17 4 3 20 20 C 1.48223 * 121.26729 * 179.97438 * 19 17 4 21 21 N 1.34126 * 126.68851 * 180.02562 * 20 19 17 22 22 N 1.28982 * 107.25957 * 179.97438 * 21 20 19 23 23 N 1.28722 * 108.97155 * 359.97438 * 22 21 20 24 24 H 0.97003 * 125.32812 * 179.97438 * 23 22 21 25 25 N 1.28874 * 109.33948 * 359.75708 * 23 22 21 26 26 C 1.38774 * 117.46649 * 0.02562 * 19 17 4 27 27 C 1.50699 * 120.96338 * 179.97438 * 26 19 17 28 28 H 1.08995 * 109.47331 * 270.22734 * 1 2 3 29 29 H 1.09007 * 109.46865 * 30.23310 * 1 2 3 30 30 H 1.09005 * 109.46761 * 150.22627 * 1 2 3 31 31 H 1.09007 * 109.47105 * 148.11604 * 5 4 3 32 32 H 1.08994 * 109.47233 * 28.11141 * 5 4 3 33 33 H 0.96996 * 119.99903 * 174.97968 * 10 9 7 34 34 H 1.08999 * 117.49831 * 214.96881 * 15 6 5 35 35 H 1.08999 * 117.49910 * 359.97438 * 15 6 5 36 36 H 1.09004 * 117.50003 * 359.97438 * 16 6 5 37 37 H 1.08998 * 117.49923 * 145.00045 * 16 6 5 38 38 H 1.09003 * 109.46805 * 89.99634 * 27 26 19 39 39 H 1.08998 * 109.47105 * 210.00004 * 27 26 19 40 40 H 1.09000 * 109.46839 * 330.00175 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1536 1.1331 0.0000 4 7 3.4345 1.2044 -0.0056 5 6 4.0737 2.5225 -0.0108 6 6 4.3329 2.9579 -1.4545 7 6 3.1244 2.9769 -2.3545 8 1 3.2077 2.6413 -3.3777 9 6 1.9123 3.4227 -1.8719 10 7 1.8494 4.0169 -0.7003 11 14 0.3593 3.1828 -2.8819 12 1 -0.8013 3.7463 -2.1468 13 1 0.5043 3.8789 -4.1857 14 1 0.1407 1.7328 -3.1167 15 6 5.4058 4.0230 -1.6899 16 6 5.6736 2.5680 -2.0801 17 6 4.2083 0.1020 -0.0012 18 8 5.4243 0.2002 -0.0016 19 6 3.5888 -1.1778 0.0043 20 6 4.3940 -2.4223 0.0087 21 7 3.9263 -3.6793 0.0136 22 7 4.9473 -4.4675 0.0157 23 7 6.0224 -3.7597 0.0117 24 1 6.9261 -4.1122 0.0125 25 7 5.7101 -2.5094 0.0020 26 6 2.2016 -1.2174 0.0044 27 6 1.4635 -2.5313 0.0096 28 1 -0.3634 0.0041 1.0276 29 1 -0.3633 0.8880 -0.5175 30 1 -0.3633 -0.8921 -0.5103 31 1 5.0198 2.4696 0.5281 32 1 3.4189 3.2458 0.4748 33 1 1.0109 4.3953 -0.3928 34 1 5.2376 4.7374 -2.4957 35 1 5.9270 4.4140 -0.8160 36 1 6.3713 2.0017 -1.4631 37 1 5.6816 2.3253 -3.1427 38 1 1.2856 -2.8440 1.0385 39 1 0.5097 -2.4142 -0.5048 40 1 2.0616 -3.2860 -0.5012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592436187.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:20 Heat of formation + Delta-G solvation = 190.024804 kcal Electronic energy + Delta-G solvation = -27473.790394 eV Core-core repulsion = 23715.748743 eV Total energy + Delta-G solvation = -3758.041651 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.24670 -41.35066 -37.37786 -36.81378 -35.43393 -33.99330 -33.04693 -32.14308 -31.30893 -29.58245 -27.60863 -25.96732 -25.24249 -24.70759 -24.20180 -21.73708 -21.66946 -21.09962 -19.35776 -18.97519 -17.77793 -16.98804 -16.84211 -16.08468 -15.42485 -15.36431 -14.68279 -14.52902 -14.14082 -13.80131 -13.40191 -13.37340 -13.02553 -12.74498 -12.58689 -12.30951 -12.13436 -12.00664 -11.50936 -11.47740 -11.35183 -11.21837 -11.03320 -10.96514 -10.81655 -10.73904 -10.48530 -10.24675 -10.15092 -9.76242 -9.20602 -9.01995 -8.92888 -8.71643 -8.10258 -7.54521 -6.08711 -4.10246 0.65634 1.31445 2.21408 2.40192 2.51318 2.99115 3.25944 3.30358 3.34983 3.87424 4.06238 4.28121 4.35841 4.76500 4.90200 5.01504 5.14661 5.24515 5.51505 5.61560 5.65774 5.70022 5.80005 5.90637 6.00741 6.04325 6.16487 6.18573 6.32387 6.40591 6.47327 6.51227 6.57361 6.61061 6.76551 6.82400 6.98720 7.10296 7.27730 7.38319 7.87161 8.32353 8.33973 8.38918 8.82661 9.00573 9.50543 10.96183 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.014846 B = 0.005906 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.543305 B = 4739.886432 C = 6018.806706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.005 4.005 3 N -0.121 5.121 4 N -0.287 5.287 5 C 0.144 3.856 6 C 0.034 3.966 7 C -0.500 4.500 8 H 0.056 0.944 9 C 0.092 3.908 10 N -0.867 5.867 11 Si 0.884 3.116 12 H -0.282 1.282 13 H -0.281 1.281 14 H -0.273 1.273 15 C -0.187 4.187 16 C -0.204 4.204 17 C 0.490 3.510 18 O -0.518 6.518 19 C -0.149 4.149 20 C 0.250 3.750 21 N -0.274 5.274 22 N -0.066 5.066 23 N -0.234 5.234 24 H 0.472 0.528 25 N -0.260 5.260 26 C 0.035 3.965 27 C -0.134 4.134 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.140 0.860 33 H 0.265 0.735 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.345 -11.759 4.274 12.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.170 4.170 3 N 0.050 4.950 4 N -0.105 5.105 5 C 0.025 3.975 6 C 0.033 3.967 7 C -0.537 4.537 8 H 0.074 0.926 9 C -0.113 4.113 10 N -0.502 5.502 11 Si 0.711 3.289 12 H -0.208 1.208 13 H -0.206 1.206 14 H -0.198 1.198 15 C -0.226 4.226 16 C -0.241 4.241 17 C 0.287 3.713 18 O -0.395 6.395 19 C -0.164 4.164 20 C -0.029 4.029 21 N -0.148 5.148 22 N -0.060 5.060 23 N -0.080 5.080 24 H 0.326 0.674 25 N -0.111 5.111 26 C 0.024 3.976 27 C -0.191 4.191 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.158 0.842 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.245 -11.354 4.458 12.200 hybrid contribution 0.089 -0.546 -0.779 0.955 sum 0.334 -11.900 3.679 12.460 Atomic orbital electron populations 1.20435 0.87088 1.03466 1.02749 1.21506 0.97864 0.86687 1.10922 1.71015 0.95586 1.26920 1.01515 1.46834 1.01367 1.10076 1.52267 1.21980 0.96852 0.79116 0.99502 1.19127 0.88479 0.97383 0.91704 1.20343 0.91839 1.44778 0.96764 0.92613 1.24722 0.98207 0.93770 0.94578 1.69645 1.26803 1.34951 1.18813 0.86791 0.82994 0.78896 0.80193 1.20774 1.20644 1.19842 1.22903 1.06371 0.91588 1.01720 1.22986 1.02963 0.98121 1.00061 1.17554 0.88478 0.84572 0.80720 1.90919 1.11718 1.85999 1.50912 1.18321 0.91225 0.88851 1.18019 1.22771 0.86632 0.92298 1.01190 1.76029 1.20187 0.99426 1.19186 1.78788 0.89250 1.22462 1.15521 1.47831 1.11581 1.02234 1.46382 0.67421 1.75449 1.15986 0.99321 1.20393 1.21357 0.92013 0.97336 0.86897 1.21284 1.00694 0.93313 1.03782 0.90838 0.90598 0.90526 0.91329 0.84244 0.92475 0.90088 0.91513 0.90053 0.91064 0.89546 0.90259 0.88054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 9.81 36.01 0.35 -0.73 16 2 C -0.01 -0.09 6.87 -82.45 -0.57 -0.66 16 3 N -0.12 -2.57 8.90 33.67 0.30 -2.27 16 4 N -0.29 -6.41 2.99 -63.03 -0.19 -6.60 16 5 C 0.14 3.34 4.81 -4.04 -0.02 3.32 16 6 C 0.03 0.84 2.00 -155.66 -0.31 0.53 16 7 C -0.50 -13.22 8.57 -34.44 -0.30 -13.51 16 8 H 0.06 1.53 7.84 -52.49 -0.41 1.12 16 9 C 0.09 2.35 4.03 -17.82 -0.07 2.27 16 10 N -0.87 -21.92 10.55 55.43 0.58 -21.33 16 11 Si 0.88 20.08 29.55 -169.99 -5.02 15.06 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 15 C -0.19 -4.22 9.96 -26.73 -0.27 -4.49 16 16 C -0.20 -4.72 9.77 -26.73 -0.26 -4.98 16 17 C 0.49 10.81 7.49 -14.78 -0.11 10.70 16 18 O -0.52 -12.25 14.32 4.93 0.07 -12.18 16 19 C -0.15 -2.86 5.96 -104.08 -0.62 -3.48 16 20 C 0.25 4.45 7.81 -156.26 -1.22 3.23 16 21 N -0.27 -4.28 9.34 32.13 0.30 -3.98 16 22 N -0.07 -0.89 13.47 60.35 0.81 -0.08 16 23 N -0.23 -2.87 7.90 60.35 0.48 -2.40 16 24 H 0.47 3.32 8.96 -340.35 -3.05 0.27 16 25 N -0.26 -4.42 11.25 32.14 0.36 -4.05 16 26 C 0.03 0.57 5.97 -103.70 -0.62 -0.05 16 27 C -0.13 -1.66 8.94 36.01 0.32 -1.34 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.08 0.84 6.05 -51.93 -0.31 0.52 16 31 H 0.07 1.53 7.37 -51.93 -0.38 1.15 16 32 H 0.14 3.38 6.00 -51.93 -0.31 3.06 16 33 H 0.26 6.47 8.32 -40.82 -0.34 6.13 16 34 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 36 H 0.08 1.88 7.27 -51.93 -0.38 1.51 16 37 H 0.07 1.65 8.14 -51.93 -0.42 1.22 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.08 0.81 6.08 -51.93 -0.32 0.49 16 40 H 0.10 1.35 5.38 -51.93 -0.28 1.07 16 LS Contribution 333.70 15.07 5.03 5.03 Total: -1.00 -30.95 333.70 -8.08 -39.03 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -7.11 Total: 2.95 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -3.69 Total: -9.18 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 2.65 Total: -40.70 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.07 Total: -12.18 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.95 -8.08 -39.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592436187.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.059 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 198.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 190.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds