Wall clock time and date at job start Tue Mar 31 2020 11:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30459 * 119.71252 * 2 1 4 4 N 1.28285 * 122.89830 * 180.29882 * 3 2 1 5 5 C 1.46496 * 119.05938 * 179.74331 * 4 3 2 6 6 C 1.53004 * 109.47045 * 268.11151 * 5 4 3 7 7 C 1.50695 * 115.54933 * 55.62740 * 6 5 4 8 8 H 1.08001 * 120.00070 * 219.50077 * 7 6 5 9 9 C 1.37874 * 120.00251 * 39.50019 * 7 6 5 10 10 N 1.31517 * 119.99955 * 10.25626 * 9 7 6 11 11 Si 1.86799 * 120.00246 * 190.25253 * 9 7 6 12 12 H 1.48493 * 109.47353 * 180.02562 * 11 9 7 13 13 H 1.48505 * 109.47227 * 300.00450 * 11 9 7 14 14 H 1.48502 * 109.46986 * 59.99792 * 11 9 7 15 15 C 1.53001 * 117.51584 * 201.32549 * 6 5 4 16 16 C 1.53002 * 117.49796 * 269.95350 * 6 5 4 17 17 C 1.34687 * 121.87970 * 359.46265 * 4 3 2 18 18 O 1.21991 * 120.44780 * 180.28018 * 17 4 3 19 19 C 1.42186 * 119.10329 * 0.25706 * 17 4 3 20 20 C 1.48223 * 121.26729 * 179.97438 * 19 17 4 21 21 N 1.34126 * 126.68851 * 180.02562 * 20 19 17 22 22 N 1.28982 * 107.25957 * 179.97438 * 21 20 19 23 23 N 1.28722 * 108.97155 * 359.97438 * 22 21 20 24 24 H 0.97003 * 125.32812 * 179.97438 * 23 22 21 25 25 N 1.28874 * 109.33948 * 359.75708 * 23 22 21 26 26 C 1.38774 * 117.46649 * 0.02562 * 19 17 4 27 27 C 1.50699 * 120.96338 * 179.97438 * 26 19 17 28 28 H 1.08995 * 109.47331 * 270.22734 * 1 2 3 29 29 H 1.09007 * 109.46865 * 30.23310 * 1 2 3 30 30 H 1.09005 * 109.46761 * 150.22627 * 1 2 3 31 31 H 1.09007 * 109.47105 * 148.11604 * 5 4 3 32 32 H 1.08994 * 109.47233 * 28.11141 * 5 4 3 33 33 H 0.96996 * 119.99903 * 174.97968 * 10 9 7 34 34 H 1.08999 * 117.49831 * 214.96881 * 15 6 5 35 35 H 1.08999 * 117.49910 * 359.97438 * 15 6 5 36 36 H 1.09004 * 117.50003 * 359.97438 * 16 6 5 37 37 H 1.08998 * 117.49923 * 145.00045 * 16 6 5 38 38 H 1.09003 * 109.46805 * 89.99634 * 27 26 19 39 39 H 1.08998 * 109.47105 * 210.00004 * 27 26 19 40 40 H 1.09000 * 109.46839 * 330.00175 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1536 1.1331 0.0000 4 7 3.4345 1.2044 -0.0056 5 6 4.0737 2.5225 -0.0108 6 6 4.3329 2.9579 -1.4545 7 6 3.1244 2.9769 -2.3545 8 1 3.2077 2.6413 -3.3777 9 6 1.9123 3.4227 -1.8719 10 7 1.8494 4.0169 -0.7003 11 14 0.3593 3.1828 -2.8819 12 1 -0.8013 3.7463 -2.1468 13 1 0.5043 3.8789 -4.1857 14 1 0.1407 1.7328 -3.1167 15 6 5.4058 4.0230 -1.6899 16 6 5.6736 2.5680 -2.0801 17 6 4.2083 0.1020 -0.0012 18 8 5.4243 0.2002 -0.0016 19 6 3.5888 -1.1778 0.0043 20 6 4.3940 -2.4223 0.0087 21 7 3.9263 -3.6793 0.0136 22 7 4.9473 -4.4675 0.0157 23 7 6.0224 -3.7597 0.0117 24 1 6.9261 -4.1122 0.0125 25 7 5.7101 -2.5094 0.0020 26 6 2.2016 -1.2174 0.0044 27 6 1.4635 -2.5313 0.0096 28 1 -0.3634 0.0041 1.0276 29 1 -0.3633 0.8880 -0.5175 30 1 -0.3633 -0.8921 -0.5103 31 1 5.0198 2.4696 0.5281 32 1 3.4189 3.2458 0.4748 33 1 1.0109 4.3953 -0.3928 34 1 5.2376 4.7374 -2.4957 35 1 5.9270 4.4140 -0.8160 36 1 6.3713 2.0017 -1.4631 37 1 5.6816 2.3253 -3.1427 38 1 1.2856 -2.8440 1.0385 39 1 0.5097 -2.4142 -0.5048 40 1 2.0616 -3.2860 -0.5012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592436187.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:19 Heat of formation + Delta-G solvation = 170.283029 kcal Electronic energy + Delta-G solvation = -27474.646462 eV Core-core repulsion = 23715.748743 eV Total energy + Delta-G solvation = -3758.897719 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.42936 -42.86599 -38.96089 -38.52829 -36.89213 -35.21167 -34.34206 -34.09277 -32.63259 -30.98968 -28.86558 -27.76229 -26.99865 -25.96858 -25.36851 -23.17779 -23.07764 -22.87312 -21.15578 -20.16836 -19.27518 -18.59888 -18.16972 -17.68264 -17.05499 -16.79736 -16.57384 -16.08023 -15.42037 -15.25719 -14.97320 -14.65964 -14.63357 -14.04828 -13.82178 -13.68642 -13.54588 -13.35637 -13.21163 -13.04007 -12.80419 -12.57235 -12.48034 -12.37436 -12.33340 -12.21643 -12.13563 -12.03983 -11.57371 -11.50604 -11.08439 -10.68012 -10.53315 -10.33265 -9.98607 -9.11354 -8.01559 -6.10264 -0.71193 0.16784 0.73817 1.17664 1.35165 1.44350 1.46710 1.52953 1.54268 2.47749 2.56626 2.61376 2.97487 3.11054 3.43668 3.62369 3.64643 3.91468 3.94391 4.20618 4.35211 4.39167 4.49332 4.54938 4.62458 4.66035 4.80440 4.83244 4.92168 4.95019 4.96557 5.03520 5.13075 5.20015 5.27107 5.36560 5.43240 5.53201 5.61021 5.64001 5.87344 6.40287 6.77289 6.82095 7.14753 7.50039 7.53157 9.02016 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.014846 B = 0.005906 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.543305 B = 4739.886432 C = 6018.806706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.009 3.991 3 N -0.166 5.166 4 N -0.302 5.302 5 C 0.157 3.843 6 C 0.017 3.983 7 C -0.527 4.527 8 H 0.032 0.968 9 C 0.072 3.928 10 N -0.873 5.873 11 Si 0.926 3.074 12 H -0.268 1.268 13 H -0.289 1.289 14 H -0.267 1.267 15 C -0.178 4.178 16 C -0.198 4.198 17 C 0.477 3.523 18 O -0.552 6.552 19 C -0.166 4.166 20 C 0.234 3.766 21 N -0.272 5.272 22 N -0.053 5.053 23 N -0.206 5.206 24 H 0.492 0.508 25 N -0.287 5.287 26 C 0.048 3.952 27 C -0.130 4.130 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.113 0.887 31 H 0.065 0.935 32 H 0.126 0.874 33 H 0.268 0.732 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.302 -13.908 4.712 14.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.158 4.158 3 N 0.007 4.993 4 N -0.120 5.120 5 C 0.037 3.963 6 C 0.015 3.985 7 C -0.564 4.564 8 H 0.051 0.949 9 C -0.133 4.133 10 N -0.508 5.508 11 Si 0.752 3.248 12 H -0.192 1.192 13 H -0.215 1.215 14 H -0.192 1.192 15 C -0.217 4.217 16 C -0.235 4.235 17 C 0.275 3.725 18 O -0.432 6.432 19 C -0.181 4.181 20 C -0.045 4.045 21 N -0.146 5.146 22 N -0.048 5.048 23 N -0.056 5.056 24 H 0.351 0.649 25 N -0.140 5.140 26 C 0.038 3.962 27 C -0.186 4.186 28 H 0.121 0.879 29 H 0.077 0.923 30 H 0.131 0.869 31 H 0.084 0.916 32 H 0.143 0.857 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.703 -13.505 4.903 14.468 hybrid contribution 0.670 -0.034 -0.895 1.118 sum -1.033 -13.539 4.009 14.158 Atomic orbital electron populations 1.20701 0.83931 1.04396 1.04955 1.22402 0.99738 0.86285 1.07372 1.70995 0.95125 1.28943 1.04274 1.46595 1.01939 1.09486 1.53950 1.21625 0.96446 0.79872 0.98325 1.19237 0.88330 0.98491 0.92408 1.20329 0.93473 1.46413 0.96148 0.94941 1.25107 0.99711 0.93156 0.95331 1.69720 1.27283 1.34513 1.19235 0.86145 0.80865 0.79042 0.78788 1.19236 1.21549 1.19205 1.22915 1.05577 0.91086 1.02104 1.22848 1.02563 0.98655 0.99434 1.18004 0.88356 0.85533 0.80585 1.90870 1.12843 1.86513 1.52972 1.18433 0.92626 0.88250 1.18798 1.22649 0.86858 0.92559 1.02450 1.76032 1.20635 0.98432 1.19459 1.78721 0.89289 1.21961 1.14832 1.47816 1.12468 1.00899 1.44444 0.64920 1.75393 1.16226 1.01259 1.21109 1.21796 0.91166 0.98924 0.84359 1.21432 1.01234 0.90380 1.05550 0.87918 0.92263 0.86910 0.91646 0.85674 0.92255 0.90408 0.89774 0.90357 0.91734 0.87046 0.87167 0.88622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.94 9.81 71.24 0.70 -1.24 16 2 C 0.01 0.29 6.87 43.23 0.30 0.59 16 3 N -0.17 -7.05 8.90 -47.38 -0.42 -7.47 16 4 N -0.30 -13.83 2.99 -471.47 -1.41 -15.25 16 5 C 0.16 7.53 4.81 86.38 0.42 7.94 16 6 C 0.02 0.84 2.00 -52.93 -0.11 0.73 16 7 C -0.53 -28.56 8.57 25.60 0.22 -28.34 16 8 H 0.03 1.85 7.84 -2.91 -0.02 1.83 16 9 C 0.07 3.67 4.03 84.65 0.34 4.01 16 10 N -0.87 -44.35 10.55 21.45 0.23 -44.12 16 11 Si 0.93 40.65 29.55 68.60 2.03 42.68 16 12 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 13 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 14 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 15 C -0.18 -8.21 9.96 30.60 0.30 -7.91 16 16 C -0.20 -9.46 9.77 30.60 0.30 -9.16 16 17 C 0.48 21.54 7.49 85.24 0.64 22.18 16 18 O -0.55 -27.07 14.32 -5.28 -0.08 -27.15 16 19 C -0.17 -6.31 5.96 -19.51 -0.12 -6.42 16 20 C 0.23 8.10 7.81 137.25 1.07 9.17 16 21 N -0.27 -7.90 9.34 -52.27 -0.49 -8.38 16 22 N -0.05 -1.33 13.47 37.02 0.50 -0.83 16 23 N -0.21 -4.70 7.90 37.02 0.29 -4.41 16 24 H 0.49 6.00 8.96 -347.52 -3.12 2.89 16 25 N -0.29 -9.59 11.25 -52.22 -0.59 -10.18 16 26 C 0.05 1.49 5.97 -19.27 -0.12 1.38 16 27 C -0.13 -2.67 8.94 71.24 0.64 -2.04 16 28 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.11 1.85 6.05 -2.38 -0.01 1.84 16 31 H 0.07 3.06 7.37 -2.38 -0.02 3.05 16 32 H 0.13 6.28 6.00 -2.39 -0.01 6.26 16 33 H 0.27 12.98 8.32 -92.71 -0.77 12.20 16 34 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 35 H 0.08 3.53 8.14 -2.39 -0.02 3.51 16 36 H 0.08 3.77 7.27 -2.38 -0.02 3.75 16 37 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.11 1.62 6.08 -2.39 -0.01 1.60 16 40 H 0.10 2.21 5.38 -2.39 -0.01 2.19 16 Total: -1.00 -69.10 333.70 2.65 -66.45 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -2.00 Total: 17.78 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 4.59 Total: -9.11 kcal Atomic # 7 Polarization: -88.76 SS G_CDS: -1.89 Total: -90.65 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.08 Total: -27.15 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -69.10 2.65 -66.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592436187.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 236.731 kcal (2) G-P(sol) polarization free energy of solvation -69.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds