Wall clock time and date at job start Tue Mar 31 2020 11:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47053 * 2 1 4 4 N 1.46501 * 109.46879 * 119.99884 * 2 1 3 5 5 C 1.46498 * 120.00287 * 115.80211 * 4 2 1 6 6 C 1.50702 * 109.46808 * 95.72537 * 5 4 2 7 7 H 1.08004 * 120.00210 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00233 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99648 * 0.02562 * 8 6 5 10 10 Si 1.86791 * 120.00337 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47614 * 89.99874 * 10 8 6 12 12 H 1.48503 * 109.47377 * 210.00653 * 10 8 6 13 13 H 1.48506 * 109.46935 * 329.99813 * 10 8 6 14 14 C 1.34774 * 119.99728 * 295.52821 * 4 2 1 15 15 O 1.21516 * 120.00424 * 5.69556 * 14 4 2 16 16 C 1.48177 * 119.99875 * 185.68907 * 14 4 2 17 17 C 1.39122 * 119.67069 * 186.23151 * 16 14 4 18 18 C 1.39678 * 118.91870 * 179.79767 * 17 16 14 19 19 C 1.48463 * 120.86720 * 180.22398 * 18 17 16 20 20 N 1.34050 * 126.67150 * 359.94389 * 19 18 17 21 21 N 1.28988 * 107.26530 * 179.87374 * 20 19 18 22 22 N 1.28722 * 108.94289 * 0.39583 * 21 20 19 23 23 H 0.97005 * 125.33818 * 179.76841 * 22 21 20 24 24 N 1.28875 * 109.32417 * 359.74898 * 22 21 20 25 25 C 1.39689 * 118.26965 * 0.47536 * 18 17 16 26 26 C 1.38337 * 119.21288 * 359.74964 * 25 18 17 27 27 N 1.31574 * 121.02809 * 0.02562 * 26 25 18 28 28 H 1.08995 * 109.47484 * 295.12126 * 1 2 3 29 29 H 1.08998 * 109.46846 * 55.11971 * 1 2 3 30 30 H 1.08999 * 109.47273 * 175.11672 * 1 2 3 31 31 H 1.08998 * 109.47164 * 239.99733 * 2 1 3 32 32 H 1.09000 * 109.47037 * 184.72640 * 3 2 1 33 33 H 1.08998 * 109.47135 * 304.72237 * 3 2 1 34 34 H 1.09001 * 109.47772 * 64.72620 * 3 2 1 35 35 H 1.08994 * 109.47522 * 215.72677 * 5 4 2 36 36 H 1.09000 * 109.47095 * 335.73284 * 5 4 2 37 37 H 0.96994 * 120.00129 * 180.02562 * 9 8 6 38 38 H 1.07995 * 120.53813 * 0.02562 * 17 16 14 39 39 H 1.07997 * 120.39623 * 179.72612 * 25 18 17 40 40 H 1.08002 * 119.48638 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.7831 -1.9331 1.0639 6 6 4.2571 -1.6218 1.0998 7 1 4.5909 -0.6006 1.2106 8 6 5.1798 -2.6407 0.9924 9 7 4.7734 -3.8842 0.8580 10 14 7.0069 -2.2549 1.0376 11 1 7.4882 -2.3022 2.4416 12 1 7.7447 -3.2571 0.2274 13 1 7.2404 -0.8987 0.4796 14 6 1.7686 -0.1799 2.4182 15 8 1.0522 0.7947 2.5347 16 6 2.3676 -0.8069 3.6197 17 6 2.0038 -0.3573 4.8850 18 6 2.5749 -0.9624 6.0069 19 6 2.2140 -0.5202 7.3775 20 7 1.3519 0.4531 7.7037 21 7 1.3203 0.5208 8.9914 22 7 2.1270 -0.3575 9.4759 23 1 2.2903 -0.5090 10.4201 24 7 2.6834 -1.0043 8.5101 25 6 3.4984 -1.9910 5.8057 26 6 3.8096 -2.3758 4.5139 27 7 3.2504 -1.7884 3.4779 28 1 -0.3634 0.4362 0.9304 29 1 -0.3633 0.5877 -0.8430 30 1 -0.3634 -1.0239 -0.0875 31 1 1.8933 -0.5139 -0.8899 32 1 3.1267 1.4436 -0.0847 33 1 1.6092 1.9801 -0.8446 34 1 1.7475 1.9313 0.9293 35 1 2.5331 -2.6030 1.8865 36 1 2.5361 -2.4126 0.1167 37 1 5.4224 -4.6011 0.7827 38 1 1.2887 0.4441 4.9980 39 1 3.9642 -2.4797 6.6486 40 1 4.5227 -3.1708 4.3533 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603321273.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:40 Heat of formation + Delta-G solvation = 149.690346 kcal Electronic energy + Delta-G solvation = -26442.928315 eV Core-core repulsion = 22683.137630 eV Total energy + Delta-G solvation = -3759.790684 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.57267 -40.21728 -38.62545 -35.42439 -34.70896 -34.02257 -33.00702 -31.76649 -31.20054 -30.42956 -26.87198 -26.60563 -25.28363 -24.78991 -23.89029 -22.66985 -22.15756 -21.25582 -19.54249 -18.56708 -17.25991 -16.71370 -16.45017 -16.08406 -15.66589 -15.18044 -14.66603 -14.43634 -14.24779 -14.12546 -13.65171 -13.43233 -13.27794 -12.90173 -12.63958 -12.43381 -12.16075 -11.77100 -11.68442 -11.58816 -11.41973 -11.31383 -11.22958 -11.18385 -10.87208 -10.82074 -10.65596 -10.41057 -10.05441 -9.57645 -9.17653 -9.09235 -8.80549 -8.47998 -8.19190 -7.61490 -5.98449 -3.93735 0.68761 1.08326 1.25398 2.08631 2.41760 3.29024 3.36842 3.38607 3.44996 3.51264 3.85909 4.11665 4.42014 4.47018 4.80822 5.10700 5.18638 5.23164 5.33235 5.38259 5.43317 5.51405 5.72769 5.74944 5.88720 6.10790 6.14235 6.16181 6.22094 6.25040 6.33024 6.39586 6.47186 6.78497 6.83856 6.90851 6.98622 7.52302 7.76480 7.93524 8.02100 8.31024 8.34861 8.45305 8.95450 9.06688 9.62335 11.09751 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.011850 B = 0.004889 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.235865 B = 5725.628565 C = 7533.338218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.146 3.854 3 C -0.167 4.167 4 N -0.571 5.571 5 C 0.239 3.761 6 C -0.478 4.478 7 H 0.051 0.949 8 C 0.067 3.933 9 N -0.892 5.892 10 Si 0.882 3.118 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.568 3.432 15 O -0.562 6.562 16 C 0.077 3.923 17 C -0.079 4.079 18 C -0.007 4.007 19 C 0.229 3.771 20 N -0.261 5.261 21 N -0.052 5.052 22 N -0.230 5.230 23 H 0.475 0.525 24 N -0.291 5.291 25 C -0.121 4.121 26 C 0.093 3.907 27 N -0.355 5.355 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.026 0.974 37 H 0.259 0.741 38 H 0.151 0.849 39 H 0.139 0.861 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.105 3.021 11.787 12.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.042 3.958 3 C -0.225 4.225 4 N -0.299 5.299 5 C 0.120 3.880 6 C -0.518 4.518 7 H 0.070 0.930 8 C -0.134 4.134 9 N -0.533 5.533 10 Si 0.710 3.290 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.202 1.202 14 C 0.355 3.645 15 O -0.443 6.443 16 C -0.062 4.062 17 C -0.102 4.102 18 C -0.018 4.018 19 C -0.051 4.051 20 N -0.134 5.134 21 N -0.047 5.047 22 N -0.076 5.076 23 H 0.329 0.671 24 N -0.143 5.143 25 C -0.144 4.144 26 C -0.065 4.065 27 N -0.066 5.066 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.044 0.956 37 H 0.069 0.931 38 H 0.169 0.831 39 H 0.157 0.843 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.520 3.438 11.355 12.696 hybrid contribution 1.544 -0.117 1.292 2.017 sum -2.976 3.321 12.647 13.411 Atomic orbital electron populations 1.22206 0.95924 1.01405 1.02912 1.20924 0.93466 0.93293 0.88105 1.22171 1.01168 0.96348 1.02847 1.48322 1.51614 1.26267 1.03737 1.19859 0.90294 0.79725 0.98163 1.21212 0.90548 0.93137 1.46911 0.93029 1.24722 0.97915 0.94902 0.95902 1.69919 1.33764 0.98914 1.50654 0.86763 0.86280 0.77991 0.77924 1.20844 1.21427 1.20226 1.17753 0.80590 0.83190 0.82967 1.90629 1.39435 1.27837 1.86388 1.21325 0.96283 0.95706 0.92851 1.22045 0.98454 0.98904 0.90802 1.17304 0.99965 0.98538 0.85965 1.23546 0.94706 0.93271 0.93579 1.76158 1.17870 1.17106 1.02269 1.78920 1.10721 1.10584 1.04462 1.47724 1.26379 1.21843 1.11633 0.67140 1.74935 1.21935 1.21413 0.96046 1.22395 0.96300 0.95737 0.99927 1.23057 0.98139 0.98738 0.86595 1.68942 1.02127 1.03557 1.31962 0.90694 0.92619 0.93127 0.89608 0.92615 0.92794 0.90517 0.91757 0.95587 0.93086 0.83107 0.84273 0.81831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 9.24 37.16 0.34 -2.37 16 2 C 0.15 2.69 3.27 -67.93 -0.22 2.46 16 3 C -0.17 -2.93 9.12 37.15 0.34 -2.59 16 4 N -0.57 -12.07 2.42 -168.46 -0.41 -12.48 16 5 C 0.24 5.63 4.74 -5.19 -0.02 5.60 16 6 C -0.48 -12.08 7.30 -34.44 -0.25 -12.33 16 7 H 0.05 1.37 7.81 -52.48 -0.41 0.96 16 8 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -23.72 13.29 55.43 0.74 -22.98 16 10 Si 0.88 20.32 29.54 -169.99 -5.02 15.30 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 C 0.57 12.03 6.99 -12.18 -0.09 11.94 16 15 O -0.56 -12.11 12.52 5.35 0.07 -12.04 16 16 C 0.08 1.53 6.55 -83.05 -0.54 0.99 16 17 C -0.08 -1.38 9.32 -38.72 -0.36 -1.74 16 18 C -0.01 -0.10 5.91 -104.60 -0.62 -0.72 16 19 C 0.23 3.29 7.97 -156.30 -1.25 2.05 16 20 N -0.26 -3.85 12.33 32.16 0.40 -3.46 16 21 N -0.05 -0.62 13.47 60.35 0.81 0.20 16 22 N -0.23 -2.05 7.90 60.35 0.48 -1.58 16 23 H 0.47 1.72 8.96 -340.37 -3.05 -1.34 16 24 N -0.29 -3.46 12.17 32.17 0.39 -3.07 16 25 C -0.12 -1.77 9.80 -39.00 -0.38 -2.15 16 26 C 0.09 1.61 11.17 -17.63 -0.20 1.41 16 27 N -0.35 -7.28 4.71 -9.88 -0.05 -7.33 16 28 H 0.07 1.35 6.20 -51.93 -0.32 1.02 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 1.56 7.76 -51.93 -0.40 1.15 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.46 5.91 -51.93 -0.31 1.15 16 35 H 0.07 1.59 5.83 -51.93 -0.30 1.29 16 36 H 0.03 0.65 7.84 -51.93 -0.41 0.24 16 37 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 38 H 0.15 2.63 7.57 -52.49 -0.40 2.23 16 39 H 0.14 1.66 7.96 -52.49 -0.42 1.24 16 40 H 0.16 2.69 8.06 -52.49 -0.42 2.27 16 LS Contribution 341.26 15.07 5.14 5.14 Total: -1.00 -30.21 341.26 -8.06 -38.27 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -7.27 Total: -0.13 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -3.35 Total: 4.15 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 2.36 Total: -50.69 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.07 Total: -12.04 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.21 -8.06 -38.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603321273.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.960 kcal (2) G-P(sol) polarization free energy of solvation -30.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds