Wall clock time and date at job start Tue Mar 31 2020 11:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47053 * 2 1 4 4 N 1.46501 * 109.46879 * 119.99884 * 2 1 3 5 5 C 1.46498 * 120.00287 * 115.80211 * 4 2 1 6 6 C 1.50702 * 109.46808 * 95.72537 * 5 4 2 7 7 H 1.08004 * 120.00210 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00233 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99648 * 0.02562 * 8 6 5 10 10 Si 1.86791 * 120.00337 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47614 * 89.99874 * 10 8 6 12 12 H 1.48503 * 109.47377 * 210.00653 * 10 8 6 13 13 H 1.48506 * 109.46935 * 329.99813 * 10 8 6 14 14 C 1.34774 * 119.99728 * 295.52821 * 4 2 1 15 15 O 1.21516 * 120.00424 * 5.69556 * 14 4 2 16 16 C 1.48177 * 119.99875 * 185.68907 * 14 4 2 17 17 C 1.39122 * 119.67069 * 186.23151 * 16 14 4 18 18 C 1.39678 * 118.91870 * 179.79767 * 17 16 14 19 19 C 1.48463 * 120.86720 * 180.22398 * 18 17 16 20 20 N 1.34050 * 126.67150 * 359.94389 * 19 18 17 21 21 N 1.28988 * 107.26530 * 179.87374 * 20 19 18 22 22 N 1.28722 * 108.94289 * 0.39583 * 21 20 19 23 23 H 0.97005 * 125.33818 * 179.76841 * 22 21 20 24 24 N 1.28875 * 109.32417 * 359.74898 * 22 21 20 25 25 C 1.39689 * 118.26965 * 0.47536 * 18 17 16 26 26 C 1.38337 * 119.21288 * 359.74964 * 25 18 17 27 27 N 1.31574 * 121.02809 * 0.02562 * 26 25 18 28 28 H 1.08995 * 109.47484 * 295.12126 * 1 2 3 29 29 H 1.08998 * 109.46846 * 55.11971 * 1 2 3 30 30 H 1.08999 * 109.47273 * 175.11672 * 1 2 3 31 31 H 1.08998 * 109.47164 * 239.99733 * 2 1 3 32 32 H 1.09000 * 109.47037 * 184.72640 * 3 2 1 33 33 H 1.08998 * 109.47135 * 304.72237 * 3 2 1 34 34 H 1.09001 * 109.47772 * 64.72620 * 3 2 1 35 35 H 1.08994 * 109.47522 * 215.72677 * 5 4 2 36 36 H 1.09000 * 109.47095 * 335.73284 * 5 4 2 37 37 H 0.96994 * 120.00129 * 180.02562 * 9 8 6 38 38 H 1.07995 * 120.53813 * 0.02562 * 17 16 14 39 39 H 1.07997 * 120.39623 * 179.72612 * 25 18 17 40 40 H 1.08002 * 119.48638 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.7831 -1.9331 1.0639 6 6 4.2571 -1.6218 1.0998 7 1 4.5909 -0.6006 1.2106 8 6 5.1798 -2.6407 0.9924 9 7 4.7734 -3.8842 0.8580 10 14 7.0069 -2.2549 1.0376 11 1 7.4882 -2.3022 2.4416 12 1 7.7447 -3.2571 0.2274 13 1 7.2404 -0.8987 0.4796 14 6 1.7686 -0.1799 2.4182 15 8 1.0522 0.7947 2.5347 16 6 2.3676 -0.8069 3.6197 17 6 2.0038 -0.3573 4.8850 18 6 2.5749 -0.9624 6.0069 19 6 2.2140 -0.5202 7.3775 20 7 1.3519 0.4531 7.7037 21 7 1.3203 0.5208 8.9914 22 7 2.1270 -0.3575 9.4759 23 1 2.2903 -0.5090 10.4201 24 7 2.6834 -1.0043 8.5101 25 6 3.4984 -1.9910 5.8057 26 6 3.8096 -2.3758 4.5139 27 7 3.2504 -1.7884 3.4779 28 1 -0.3634 0.4362 0.9304 29 1 -0.3633 0.5877 -0.8430 30 1 -0.3634 -1.0239 -0.0875 31 1 1.8933 -0.5139 -0.8899 32 1 3.1267 1.4436 -0.0847 33 1 1.6092 1.9801 -0.8446 34 1 1.7475 1.9313 0.9293 35 1 2.5331 -2.6030 1.8865 36 1 2.5361 -2.4126 0.1167 37 1 5.4224 -4.6011 0.7827 38 1 1.2887 0.4441 4.9980 39 1 3.9642 -2.4797 6.6486 40 1 4.5227 -3.1708 4.3533 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603321273.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:39 Heat of formation + Delta-G solvation = 130.983657 kcal Electronic energy + Delta-G solvation = -26443.739498 eV Core-core repulsion = 22683.137630 eV Total energy + Delta-G solvation = -3760.601867 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.55063 -41.69905 -40.12724 -37.06509 -35.81405 -35.15046 -34.70931 -33.34450 -32.47131 -31.86578 -28.73283 -27.98970 -26.50834 -25.92672 -25.25714 -24.42118 -23.44186 -22.67319 -20.65666 -19.85099 -18.47620 -18.21834 -18.06643 -17.63752 -17.02475 -16.62626 -16.28993 -16.09178 -15.82726 -15.32026 -15.00155 -14.75638 -14.70478 -14.42237 -14.20512 -13.89997 -13.47619 -13.35870 -13.17985 -12.90905 -12.76964 -12.65656 -12.63535 -12.53008 -12.32359 -12.23056 -12.12754 -12.03692 -11.80999 -11.48629 -10.69917 -10.48927 -10.29169 -10.18228 -9.77857 -9.31937 -7.94482 -5.95878 -0.47574 -0.18304 0.12463 1.22111 1.33836 1.45587 1.49628 1.56239 1.91203 2.24356 2.50913 2.57454 2.98305 3.02404 3.33092 3.41600 3.84815 3.90522 3.98380 4.07301 4.11510 4.30939 4.33400 4.42826 4.46967 4.76768 4.80187 4.82997 4.84825 4.99956 5.04022 5.04410 5.20852 5.36351 5.43053 5.50142 5.57582 5.66272 5.94043 6.06424 6.37433 6.64100 6.96700 7.03275 7.08469 7.39078 7.64429 9.13266 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.011850 B = 0.004889 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.235865 B = 5725.628565 C = 7533.338218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.134 3.866 3 C -0.157 4.157 4 N -0.577 5.577 5 C 0.257 3.743 6 C -0.477 4.477 7 H 0.033 0.967 8 C 0.035 3.965 9 N -0.918 5.918 10 Si 0.931 3.069 11 H -0.274 1.274 12 H -0.287 1.287 13 H -0.284 1.284 14 C 0.562 3.438 15 O -0.572 6.572 16 C 0.053 3.947 17 C -0.078 4.078 18 C 0.003 3.997 19 C 0.211 3.789 20 N -0.290 5.290 21 N -0.052 5.052 22 N -0.194 5.194 23 H 0.497 0.503 24 N -0.278 5.278 25 C -0.094 4.094 26 C 0.084 3.916 27 N -0.391 5.391 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.039 0.961 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.007 0.993 37 H 0.260 0.740 38 H 0.147 0.853 39 H 0.176 0.824 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.680 3.114 13.769 14.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.031 3.969 3 C -0.215 4.215 4 N -0.306 5.306 5 C 0.136 3.864 6 C -0.517 4.517 7 H 0.052 0.948 8 C -0.163 4.163 9 N -0.559 5.559 10 Si 0.759 3.241 11 H -0.199 1.199 12 H -0.213 1.213 13 H -0.210 1.210 14 C 0.350 3.650 15 O -0.454 6.454 16 C -0.084 4.084 17 C -0.101 4.101 18 C -0.008 4.008 19 C -0.069 4.069 20 N -0.162 5.162 21 N -0.047 5.047 22 N -0.045 5.045 23 H 0.357 0.643 24 N -0.131 5.131 25 C -0.116 4.116 26 C -0.075 4.075 27 N -0.103 5.103 28 H 0.076 0.924 29 H 0.104 0.896 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.059 0.941 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.025 0.975 37 H 0.069 0.931 38 H 0.165 0.835 39 H 0.193 0.807 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -4.109 3.554 13.354 14.417 hybrid contribution 1.381 -0.130 0.899 1.653 sum -2.729 3.424 14.254 14.911 Atomic orbital electron populations 1.22097 0.94077 1.01851 1.03240 1.21193 0.94987 0.93545 0.87180 1.22076 1.00253 0.95888 1.03283 1.48329 1.51624 1.25856 1.04779 1.19465 0.89843 0.80546 0.96516 1.21155 0.91479 0.92164 1.46895 0.94828 1.25168 1.00706 0.94726 0.95732 1.69999 1.34662 0.99452 1.51802 0.85995 0.82790 0.77207 0.78153 1.19934 1.21277 1.20951 1.18045 0.80446 0.83134 0.83413 1.90605 1.39918 1.28199 1.86651 1.21189 0.97465 0.96623 0.93125 1.21974 0.98507 0.98921 0.90703 1.17368 0.99198 0.97981 0.86299 1.23278 0.95849 0.94204 0.93537 1.76157 1.18723 1.17879 1.03484 1.78880 1.11148 1.11049 1.03597 1.47803 1.24321 1.19945 1.12470 0.64297 1.74884 1.21436 1.21051 0.95725 1.22607 0.94752 0.94427 0.99807 1.23241 0.98194 0.98858 0.87172 1.68734 1.03157 1.04352 1.34018 0.92430 0.89579 0.93112 0.89590 0.94138 0.89546 0.92246 0.92878 0.97513 0.93061 0.83492 0.80702 0.81209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.98 9.24 71.98 0.67 -4.31 16 2 C 0.13 4.98 3.27 44.99 0.15 5.13 16 3 C -0.16 -5.49 9.12 71.98 0.66 -4.83 16 4 N -0.58 -25.20 2.42 -805.18 -1.95 -27.15 16 5 C 0.26 12.52 4.74 85.63 0.41 12.92 16 6 C -0.48 -24.69 7.30 25.60 0.19 -24.50 16 7 H 0.03 1.83 7.81 -2.91 -0.02 1.81 16 8 C 0.04 1.82 5.46 84.65 0.46 2.29 16 9 N -0.92 -49.29 13.29 21.45 0.28 -49.01 16 10 Si 0.93 41.75 29.54 68.60 2.03 43.77 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 13 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 14 C 0.56 24.56 6.99 86.89 0.61 25.16 16 15 O -0.57 -25.31 12.52 -3.77 -0.05 -25.36 16 16 C 0.05 2.18 6.55 41.86 0.27 2.46 16 17 C -0.08 -2.74 9.32 22.83 0.21 -2.53 16 18 C 0.00 0.08 5.91 -19.85 -0.12 -0.04 16 19 C 0.21 5.63 7.97 137.38 1.09 6.72 16 20 N -0.29 -8.11 12.33 -52.18 -0.64 -8.75 16 21 N -0.05 -1.11 13.47 37.02 0.50 -0.62 16 22 N -0.19 -2.80 7.90 37.02 0.29 -2.51 16 23 H 0.50 1.64 8.96 -347.54 -3.12 -1.47 16 24 N -0.28 -5.66 12.17 -52.13 -0.63 -6.30 16 25 C -0.09 -2.55 9.80 22.64 0.22 -2.32 16 26 C 0.08 2.87 11.17 84.75 0.95 3.81 16 27 N -0.39 -16.33 4.71 -185.16 -0.87 -17.20 16 28 H 0.06 2.06 6.20 -2.39 -0.01 2.05 16 29 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.09 3.16 7.76 -2.39 -0.02 3.14 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.06 2.29 5.91 -2.39 -0.01 2.27 16 35 H 0.05 2.74 5.83 -2.39 -0.01 2.72 16 36 H 0.01 0.36 7.84 -2.39 -0.02 0.34 16 37 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 38 H 0.15 5.23 7.57 -2.91 -0.02 5.21 16 39 H 0.18 3.48 7.96 -2.91 -0.02 3.46 16 40 H 0.17 5.45 8.06 -2.91 -0.02 5.43 16 Total: -1.00 -66.03 341.26 2.70 -63.32 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -2.01 Total: 9.84 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: 5.76 Total: 19.96 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -3.02 Total: -111.53 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.05 Total: -25.36 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -66.03 2.70 -63.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603321273.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.308 kcal (2) G-P(sol) polarization free energy of solvation -66.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds