Wall clock time and date at job start Tue Mar 31 2020 10:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38171 * 119.44114 * 2 1 4 4 C 1.38598 * 119.44314 * 179.72385 * 3 2 1 5 5 C 1.39468 * 118.40183 * 0.56133 * 4 3 2 6 6 C 1.48356 * 120.56791 * 179.73736 * 5 4 3 7 7 N 1.34083 * 126.67626 * 174.58665 * 6 5 4 8 8 N 1.28991 * 107.26317 * 179.79193 * 7 6 5 9 9 N 1.28726 * 108.95200 * 0.39048 * 8 7 6 10 10 H 0.96997 * 125.33756 * 179.86317 * 9 8 7 11 11 N 1.28874 * 109.32879 * 359.59882 * 9 8 7 12 12 C 1.40148 * 118.86171 * 359.46101 * 5 4 3 13 13 N 1.38796 * 119.78504 * 180.27325 * 12 5 4 14 14 C 1.48532 * 110.99916 * 99.69282 * 13 12 5 15 15 C 1.54938 * 103.22749 * 159.72030 * 14 13 12 16 16 C 1.54594 * 102.92075 * 322.58648 * 15 14 13 17 17 O 1.42896 * 110.30652 * 263.03932 * 16 15 14 18 18 C 1.50699 * 110.39469 * 140.91521 * 16 15 14 19 19 H 1.07997 * 120.00146 * 244.23500 * 18 16 15 20 20 C 1.37882 * 119.99632 * 64.23297 * 18 16 15 21 21 N 1.31512 * 120.00148 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 119.99738 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47217 * 59.99552 * 22 20 18 24 24 H 1.48504 * 109.46994 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46997 * 299.99866 * 22 20 18 26 26 C 1.47898 * 110.99809 * 217.08960 * 13 12 5 27 27 N 1.31951 * 119.44063 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.46820 * 269.97561 * 1 2 3 29 29 H 1.08998 * 109.47118 * 29.97369 * 1 2 3 30 30 H 1.08993 * 109.47182 * 149.98290 * 1 2 3 31 31 H 1.07995 * 120.27800 * 0.02562 * 3 2 1 32 32 H 1.08003 * 120.80098 * 180.29907 * 4 3 2 33 33 H 1.09003 * 110.66412 * 278.15191 * 14 13 12 34 34 H 1.08996 * 110.66751 * 41.28524 * 14 13 12 35 35 H 1.08997 * 110.72393 * 204.22147 * 15 14 13 36 36 H 1.09001 * 110.87247 * 81.01411 * 15 14 13 37 37 H 0.96702 * 114.00269 * 295.72004 * 17 16 15 38 38 H 0.97004 * 120.00042 * 179.97438 * 21 20 18 39 39 H 1.08996 * 109.91979 * 333.50522 * 26 13 12 40 40 H 1.09001 * 109.92233 * 94.80473 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1862 1.2033 0.0000 4 6 3.5722 1.2033 0.0058 5 6 4.2356 -0.0234 -0.0005 6 6 5.7181 -0.0794 -0.0006 7 7 6.4780 -1.1799 0.0952 8 7 7.7098 -0.7995 0.0525 9 7 7.7479 0.4825 -0.0567 10 1 8.5554 1.0176 -0.1070 11 7 6.5449 0.9433 -0.0942 12 6 3.4778 -1.2024 -0.0009 13 7 4.1184 -2.4337 -0.0014 14 6 4.1570 -3.0141 1.3653 15 6 4.3942 -4.5226 1.1032 16 6 3.5537 -4.7893 -0.1666 17 8 2.2782 -5.3278 0.1871 18 6 4.2812 -5.7327 -1.0895 19 1 4.6002 -5.3955 -2.0646 20 6 4.5395 -7.0265 -0.6888 21 7 4.1514 -7.4370 0.4988 22 14 5.4419 -8.1958 -1.8325 23 1 6.7837 -7.6431 -2.1474 24 1 5.5928 -9.5169 -1.1712 25 1 4.6658 -8.3573 -3.0883 26 6 3.3858 -3.4118 -0.8344 27 7 2.1556 -1.1491 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6417 2.1359 0.0004 32 1 4.1252 2.1310 0.0108 33 1 4.9798 -2.5895 1.9404 34 1 3.2074 -2.8573 1.8768 35 1 4.0314 -5.1211 1.9388 36 1 5.4493 -4.7231 0.9165 37 1 2.3217 -6.1954 0.6120 38 1 4.3328 -8.3474 0.7805 39 1 2.3295 -3.1461 -0.8768 40 1 3.8068 -3.4327 -1.8396 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605766238.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:00 Heat of formation + Delta-G solvation = 111.112283 kcal Electronic energy + Delta-G solvation = -26873.532570 eV Core-core repulsion = 23112.069016 eV Total energy + Delta-G solvation = -3761.463555 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.29999 -41.76247 -39.65171 -36.74190 -35.55169 -34.90388 -34.09205 -33.19610 -32.81352 -30.44532 -29.90755 -28.66444 -26.66050 -25.52998 -24.60962 -23.94557 -22.53067 -22.01334 -21.24962 -20.18980 -19.08392 -18.18806 -17.99586 -17.41092 -17.23057 -16.85450 -16.02343 -15.84588 -15.60009 -15.27931 -15.00681 -14.64776 -14.33152 -13.97800 -13.79412 -13.68096 -13.36945 -13.20362 -13.10003 -12.98767 -12.90688 -12.75786 -12.52974 -12.34615 -12.23515 -12.16527 -12.00177 -11.96201 -11.89998 -11.11799 -10.71362 -10.60960 -10.56275 -10.08724 -9.82741 -9.24694 -8.18276 -6.31391 -0.42187 0.20026 0.31040 1.40583 1.42592 1.43748 1.51690 1.53790 2.41802 2.66788 2.69178 2.80399 3.08483 3.28452 3.40925 3.84242 3.94551 4.07206 4.22688 4.27387 4.28745 4.39289 4.46690 4.51927 4.59231 4.72978 4.77608 4.84353 4.87098 5.03238 5.09914 5.10358 5.20029 5.26997 5.38375 5.58755 5.61548 5.74024 5.75515 5.86096 6.17583 6.36661 6.71172 6.98703 7.31728 7.38046 7.50583 8.88052 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.012745 B = 0.005058 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.475334 B = 5534.989352 C = 7210.170050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.143 3.857 3 C -0.170 4.170 4 C -0.022 4.022 5 C -0.078 4.078 6 C 0.215 3.785 7 N -0.258 5.258 8 N -0.075 5.075 9 N -0.204 5.204 10 H 0.492 0.508 11 N -0.289 5.289 12 C 0.314 3.686 13 N -0.450 5.450 14 C 0.069 3.931 15 C -0.102 4.102 16 C 0.237 3.763 17 O -0.598 6.598 18 C -0.552 4.552 19 H 0.049 0.951 20 C 0.030 3.970 21 N -0.914 5.914 22 Si 0.959 3.041 23 H -0.275 1.275 24 H -0.277 1.277 25 H -0.275 1.275 26 C 0.066 3.934 27 N -0.541 5.541 28 H 0.091 0.909 29 H 0.112 0.888 30 H 0.060 0.940 31 H 0.188 0.812 32 H 0.175 0.825 33 H 0.079 0.921 34 H 0.035 0.965 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.377 0.623 38 H 0.270 0.730 39 H 0.058 0.942 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.341 22.164 1.270 22.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.003 3.997 3 C -0.189 4.189 4 C -0.049 4.049 5 C -0.086 4.086 6 C -0.066 4.066 7 N -0.129 5.129 8 N -0.070 5.070 9 N -0.054 5.054 10 H 0.351 0.649 11 N -0.142 5.142 12 C 0.082 3.918 13 N -0.172 5.172 14 C -0.056 4.056 15 C -0.141 4.141 16 C 0.197 3.803 17 O -0.408 6.408 18 C -0.590 4.590 19 H 0.067 0.933 20 C -0.170 4.170 21 N -0.554 5.554 22 Si 0.785 3.215 23 H -0.200 1.200 24 H -0.202 1.202 25 H -0.200 1.200 26 C -0.061 4.061 27 N -0.254 5.254 28 H 0.109 0.891 29 H 0.131 0.869 30 H 0.079 0.921 31 H 0.206 0.794 32 H 0.193 0.807 33 H 0.097 0.903 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.227 0.773 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.818 21.538 0.956 21.575 hybrid contribution 0.684 -0.681 -0.107 0.971 sum 1.502 20.857 0.849 20.928 Atomic orbital electron populations 1.20884 0.86509 1.04491 1.04196 1.22022 0.98670 0.87848 0.91171 1.22261 0.93717 1.00141 1.02795 1.21871 0.94913 0.96422 0.91728 1.17964 0.86069 0.94246 1.10303 1.23326 0.95888 0.84797 1.02555 1.76603 0.94775 1.25104 1.16417 1.79020 1.16429 0.95827 1.15742 1.47773 1.08241 1.05440 1.43932 0.64928 1.74766 0.91146 1.25800 1.22526 1.20238 0.87199 0.91799 0.92537 1.62710 1.44676 1.00096 1.09675 1.22996 0.99114 0.95478 0.88033 1.22720 1.00197 0.92349 0.98855 1.19445 0.80656 0.89421 0.90783 1.86107 1.32513 1.39406 1.82739 1.21851 1.37496 0.97506 1.02182 0.93282 1.25655 0.95560 0.99246 0.96501 1.69690 1.47673 1.18581 1.19470 0.85604 0.78962 0.77937 0.79043 1.20046 1.20202 1.19999 1.22635 0.96837 0.90706 0.95931 1.67734 1.09399 1.32133 1.16168 0.89061 0.86936 0.92062 0.79432 0.80746 0.90293 0.94698 0.92827 0.93059 0.77254 0.92074 0.92341 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.88 10.16 71.24 0.72 -1.15 16 2 C 0.14 3.62 6.78 42.53 0.29 3.91 16 3 C -0.17 -3.10 9.71 22.34 0.22 -2.88 16 4 C -0.02 -0.47 9.83 22.65 0.22 -0.24 16 5 C -0.08 -2.44 5.91 -19.82 -0.12 -2.55 16 6 C 0.21 6.77 7.90 137.33 1.08 7.85 16 7 N -0.26 -9.43 10.94 -52.22 -0.57 -10.00 16 8 N -0.08 -2.23 13.47 37.02 0.50 -1.73 16 9 N -0.20 -4.10 7.90 37.02 0.29 -3.81 16 10 H 0.49 4.25 8.96 -347.54 -3.12 1.14 16 11 N -0.29 -6.91 12.17 -52.17 -0.63 -7.55 16 12 C 0.31 11.88 5.55 133.40 0.74 12.62 16 13 N -0.45 -19.79 3.52 -688.58 -2.42 -22.21 16 14 C 0.07 3.08 6.45 86.65 0.56 3.64 16 15 C -0.10 -5.23 5.50 31.80 0.17 -5.05 16 16 C 0.24 12.88 0.99 -10.66 -0.01 12.87 16 17 O -0.60 -33.88 12.93 -148.98 -1.93 -35.81 16 18 C -0.55 -32.00 8.10 25.60 0.21 -31.79 16 19 H 0.05 2.87 7.34 -2.91 -0.02 2.85 16 20 C 0.03 1.69 5.26 84.66 0.45 2.13 16 21 N -0.91 -51.14 10.88 21.45 0.23 -50.90 16 22 Si 0.96 44.60 29.54 68.60 2.03 46.63 16 23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 25 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 26 C 0.07 3.30 6.07 86.45 0.52 3.82 16 27 N -0.54 -19.45 8.57 -180.64 -1.55 -20.99 16 28 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.11 1.17 8.07 -2.39 -0.02 1.15 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.19 1.58 8.06 -2.91 -0.02 1.55 16 32 H 0.18 2.56 7.97 -2.91 -0.02 2.53 16 33 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 34 H 0.03 1.56 7.99 -2.39 -0.02 1.54 16 35 H 0.05 2.81 8.05 -2.39 -0.02 2.79 16 36 H 0.05 2.79 7.86 -2.39 -0.02 2.77 16 37 H 0.38 21.55 7.05 -74.06 -0.52 21.03 16 38 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 39 H 0.06 2.96 6.38 -2.39 -0.02 2.95 16 40 H 0.06 3.09 7.39 -2.39 -0.02 3.08 16 Total: -1.00 -74.26 337.30 -1.51 -75.77 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: -2.52 Total: 27.43 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 5.06 Total: 3.17 kcal Atomic # 7 Polarization: -113.04 SS G_CDS: -4.15 Total: -117.19 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -1.93 Total: -35.81 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -74.26 -1.51 -75.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605766238.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.882 kcal (2) G-P(sol) polarization free energy of solvation -74.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds