Wall clock time and date at job start Tue Mar 31 2020 10:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37854 * 119.51369 * 2 1 4 4 C 1.39900 * 119.19116 * 180.02562 * 3 2 1 5 5 C 1.48461 * 120.85833 * 180.02562 * 4 3 2 6 6 N 1.34049 * 126.67278 * 179.68721 * 5 4 3 7 7 N 1.28992 * 107.26622 * 179.83480 * 6 5 4 8 8 N 1.28730 * 108.94458 * 0.43260 * 7 6 5 9 9 H 0.96997 * 125.34648 * 179.74151 * 8 7 6 10 10 N 1.28877 * 109.31540 * 359.72461 * 8 7 6 11 11 C 1.39438 * 118.27829 * 359.74933 * 4 3 2 12 12 C 1.38895 * 118.96091 * 0.51488 * 11 4 3 13 13 N 1.39041 * 119.65167 * 179.75061 * 12 11 4 14 14 C 1.47439 * 110.99844 * 299.85300 * 13 12 11 15 15 C 1.54322 * 107.36952 * 236.65643 * 14 13 12 16 16 C 1.55398 * 102.90031 * 337.89642 * 15 14 13 17 17 O 1.42895 * 110.87186 * 277.39444 * 16 15 14 18 18 C 1.50700 * 111.05809 * 153.64741 * 16 15 14 19 19 H 1.08005 * 119.99878 * 247.58223 * 18 16 15 20 20 C 1.37869 * 119.99802 * 67.58770 * 18 16 15 21 21 N 1.31518 * 120.00171 * 359.97438 * 20 18 16 22 22 Si 1.86802 * 119.99890 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47041 * 0.02562 * 22 20 18 24 24 H 1.48509 * 109.47061 * 119.99988 * 22 20 18 25 25 H 1.48498 * 109.47266 * 239.99938 * 22 20 18 26 26 C 1.47843 * 111.00003 * 179.00482 * 13 12 11 27 27 N 1.31984 * 119.51308 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.46915 * 269.97872 * 1 2 3 29 29 H 1.08996 * 109.47321 * 29.97570 * 1 2 3 30 30 H 1.08997 * 109.47414 * 149.98001 * 1 2 3 31 31 H 1.08000 * 120.40331 * 359.97438 * 3 2 1 32 32 H 1.08000 * 120.51272 * 180.26383 * 11 4 3 33 33 H 1.09002 * 109.88998 * 356.14563 * 14 13 12 34 34 H 1.09003 * 109.88733 * 117.17224 * 14 13 12 35 35 H 1.09005 * 110.70342 * 96.18020 * 15 14 13 36 36 H 1.08997 * 110.70605 * 219.41644 * 15 14 13 37 37 H 0.96706 * 113.99681 * 292.30288 * 17 16 15 38 38 H 0.97004 * 119.99744 * 179.97438 * 21 20 18 39 39 H 1.08996 * 110.37823 * 265.19379 * 26 13 12 40 40 H 1.09002 * 110.37399 * 27.53895 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1861 1.1997 0.0000 4 6 3.5851 1.1918 -0.0005 5 6 4.3537 2.4619 0.0000 6 7 5.6881 2.5902 0.0054 7 7 5.9513 3.8530 0.0003 8 7 4.8446 4.5106 0.0011 9 1 4.7664 5.4774 0.0016 10 7 3.8569 3.6828 0.0010 11 6 4.2388 -0.0399 0.0043 12 6 3.4806 -1.2037 -0.0015 13 7 4.1176 -2.4396 -0.0020 14 6 4.9733 -2.5924 -1.1929 15 6 4.5115 -3.8661 -1.9317 16 6 3.7913 -4.6727 -0.8156 17 8 4.7326 -5.4052 -0.0287 18 6 2.7484 -5.5913 -1.3984 19 1 1.7010 -5.4085 -1.2085 20 6 3.1314 -6.6649 -2.1739 21 7 4.4068 -6.8872 -2.4054 22 14 1.8387 -7.8040 -2.8957 23 1 0.4877 -7.3393 -2.4905 24 1 1.9415 -7.7936 -4.3772 25 1 2.0592 -9.1841 -2.3938 26 6 3.1336 -3.5428 0.0155 27 7 2.1572 -1.1486 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5141 31 1 1.6447 2.1342 -0.0004 32 1 5.3177 -0.0880 0.0083 33 1 4.8616 -1.7251 -1.8436 34 1 6.0152 -2.6967 -0.8899 35 1 3.8178 -3.6159 -2.7344 36 1 5.3674 -4.4189 -2.3189 37 1 5.1702 -6.1233 -0.5064 38 1 4.6762 -7.6429 -2.9507 39 1 2.9566 -3.8774 1.0376 40 1 2.1994 -3.2255 -0.4480 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609386321.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:07 Heat of formation + Delta-G solvation = 127.741806 kcal Electronic energy + Delta-G solvation = -25980.083561 eV Core-core repulsion = 22219.341117 eV Total energy + Delta-G solvation = -3760.742444 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.69819 -40.53202 -38.12162 -35.06519 -34.81647 -34.09592 -32.21706 -32.02638 -31.47247 -29.03255 -28.33788 -27.15296 -25.43875 -24.62528 -24.36676 -22.47150 -21.48148 -20.17430 -19.67039 -19.10998 -17.39002 -17.37174 -16.52778 -16.27594 -15.60233 -15.25594 -14.90839 -14.62219 -14.26776 -14.13163 -13.83180 -13.38841 -12.78423 -12.69970 -12.61349 -12.57869 -12.17453 -11.96917 -11.84927 -11.64802 -11.57953 -11.32252 -11.28276 -11.25792 -11.00659 -10.82568 -10.46085 -10.40129 -10.04885 -9.45190 -9.29183 -9.24696 -9.05527 -8.59392 -8.08484 -7.63387 -6.22291 -4.29199 0.54223 1.00495 1.28109 1.96788 2.28003 3.22259 3.31078 3.35617 3.39170 3.78608 3.93005 4.15561 4.31052 4.65553 4.91448 5.04749 5.06383 5.18450 5.24897 5.28084 5.54644 5.63532 5.65590 5.68754 5.85788 5.90171 6.04885 6.06334 6.15009 6.16034 6.23160 6.38951 6.61108 6.64089 6.94797 7.00386 7.21354 7.41009 7.45820 7.71763 7.82258 7.89834 8.09540 8.28589 8.73460 9.39696 9.60164 10.85305 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.021950 B = 0.003238 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.307636 B = 8645.105172 C = 9456.184511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.157 3.843 3 C -0.179 4.179 4 C 0.044 3.956 5 C 0.224 3.776 6 N -0.259 5.259 7 N -0.050 5.050 8 N -0.229 5.229 9 H 0.475 0.525 10 N -0.288 5.288 11 C -0.154 4.154 12 C 0.332 3.668 13 N -0.467 5.467 14 C 0.052 3.948 15 C -0.146 4.146 16 C 0.250 3.750 17 O -0.582 6.582 18 C -0.531 4.531 19 H 0.065 0.935 20 C 0.070 3.930 21 N -0.898 5.898 22 Si 0.901 3.099 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.282 1.282 26 C 0.061 3.939 27 N -0.504 5.504 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.147 0.853 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.383 0.617 38 H 0.267 0.733 39 H 0.074 0.926 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.453 20.481 2.507 20.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.018 3.982 3 C -0.203 4.203 4 C 0.033 3.967 5 C -0.056 4.056 6 N -0.132 5.132 7 N -0.045 5.045 8 N -0.075 5.075 9 H 0.330 0.670 10 N -0.140 5.140 11 C -0.179 4.179 12 C 0.099 3.901 13 N -0.183 5.183 14 C -0.073 4.073 15 C -0.185 4.185 16 C 0.210 3.790 17 O -0.391 6.391 18 C -0.569 4.569 19 H 0.083 0.917 20 C -0.132 4.132 21 N -0.539 5.539 22 Si 0.729 3.271 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.208 1.208 26 C -0.065 4.065 27 N -0.219 5.219 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.234 0.766 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.068 20.272 3.312 20.645 hybrid contribution -0.666 0.269 -1.419 1.590 sum -2.734 20.542 1.894 20.809 Atomic orbital electron populations 1.20720 0.88576 1.03579 1.03150 1.20983 0.96844 0.87215 0.93169 1.21653 0.92466 0.99751 1.06389 1.17255 0.91804 0.86964 1.00645 1.23552 0.88472 0.91951 1.01618 1.76162 1.13124 1.06860 1.17032 1.78948 1.11483 0.99321 1.14725 1.47746 1.01093 1.12512 1.46114 0.67047 1.74928 1.16998 1.00406 1.21670 1.21526 1.01828 0.89972 1.04592 1.20058 0.87549 0.91413 0.91084 1.60710 1.20181 0.99944 1.37459 1.22964 0.97097 0.99187 0.88054 1.23369 1.01517 0.94252 0.99381 1.19628 0.86445 0.87731 0.85232 1.86114 1.59373 1.50473 1.43180 1.21578 0.93570 1.10954 1.30802 0.91714 1.25006 0.95699 0.97300 0.95195 1.69589 1.14716 1.29983 1.39562 0.86388 0.81713 0.80420 0.78592 1.19581 1.20942 1.20798 1.23161 0.93689 0.87925 1.01687 1.67483 1.09183 1.29409 1.15857 0.90310 0.90786 0.90055 0.84406 0.83563 0.93403 0.90358 0.92147 0.90103 0.76564 0.92270 0.90778 0.89525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.08 10.16 36.01 0.37 -0.72 16 2 C 0.16 2.22 6.77 -82.67 -0.56 1.66 16 3 C -0.18 -2.30 9.41 -39.10 -0.37 -2.67 16 4 C 0.04 0.63 5.91 -104.61 -0.62 0.01 16 5 C 0.22 2.93 7.97 -156.30 -1.25 1.69 16 6 N -0.26 -3.52 12.32 32.16 0.40 -3.12 16 7 N -0.05 -0.54 13.47 60.35 0.81 0.27 16 8 N -0.23 -1.78 7.90 60.35 0.48 -1.31 16 9 H 0.48 1.20 8.96 -340.37 -3.05 -1.85 16 10 N -0.29 -3.05 12.17 32.17 0.39 -2.66 16 11 C -0.15 -2.45 8.74 -38.89 -0.34 -2.79 16 12 C 0.33 6.05 6.14 -155.02 -0.95 5.10 16 13 N -0.47 -9.51 5.20 -170.04 -0.88 -10.39 16 14 C 0.05 1.02 6.44 -2.84 -0.02 1.00 16 15 C -0.15 -3.32 5.65 -24.77 -0.14 -3.46 16 16 C 0.25 6.22 0.89 -89.49 -0.08 6.14 16 17 O -0.58 -15.30 13.18 -35.23 -0.46 -15.77 16 18 C -0.53 -14.13 8.25 -34.44 -0.28 -14.41 16 19 H 0.06 1.72 7.77 -52.48 -0.41 1.32 16 20 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 21 N -0.90 -23.71 10.78 55.43 0.60 -23.11 16 22 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 C 0.06 1.38 5.55 -2.29 -0.01 1.36 16 27 N -0.50 -8.89 8.06 -8.74 -0.07 -8.96 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.14 1.43 7.97 -52.49 -0.42 1.01 16 32 H 0.15 2.27 7.91 -52.49 -0.42 1.85 16 33 H 0.05 0.85 7.17 -51.93 -0.37 0.48 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.06 1.40 8.04 -51.93 -0.42 0.98 16 36 H 0.08 1.92 7.84 -51.93 -0.41 1.51 16 37 H 0.38 10.19 6.93 45.56 0.32 10.51 16 38 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 39 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 40 H 0.09 1.96 6.43 -51.93 -0.33 1.63 16 LS Contribution 339.07 15.07 5.11 5.11 Total: -1.00 -30.62 339.07 -9.75 -40.38 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -6.75 Total: 9.39 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -4.35 Total: -5.35 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: 1.72 Total: -49.26 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.46 Total: -15.77 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.62 -9.75 -40.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609386321.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.118 kcal (2) G-P(sol) polarization free energy of solvation -30.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds