Wall clock time and date at job start Tue Mar 31 2020 10:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37854 * 119.51369 * 2 1 4 4 C 1.39900 * 119.19116 * 180.02562 * 3 2 1 5 5 C 1.48461 * 120.85833 * 180.02562 * 4 3 2 6 6 N 1.34049 * 126.67278 * 179.68721 * 5 4 3 7 7 N 1.28992 * 107.26622 * 179.83480 * 6 5 4 8 8 N 1.28730 * 108.94458 * 0.43260 * 7 6 5 9 9 H 0.96997 * 125.34648 * 179.74151 * 8 7 6 10 10 N 1.28877 * 109.31540 * 359.72461 * 8 7 6 11 11 C 1.39438 * 118.27829 * 359.74933 * 4 3 2 12 12 C 1.38895 * 118.96091 * 0.51488 * 11 4 3 13 13 N 1.39041 * 119.65167 * 179.75061 * 12 11 4 14 14 C 1.47439 * 110.99844 * 299.85300 * 13 12 11 15 15 C 1.54322 * 107.36952 * 236.65643 * 14 13 12 16 16 C 1.55398 * 102.90031 * 337.89642 * 15 14 13 17 17 O 1.42895 * 110.87186 * 277.39444 * 16 15 14 18 18 C 1.50700 * 111.05809 * 153.64741 * 16 15 14 19 19 H 1.08005 * 119.99878 * 247.58223 * 18 16 15 20 20 C 1.37869 * 119.99802 * 67.58770 * 18 16 15 21 21 N 1.31518 * 120.00171 * 359.97438 * 20 18 16 22 22 Si 1.86802 * 119.99890 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47041 * 0.02562 * 22 20 18 24 24 H 1.48509 * 109.47061 * 119.99988 * 22 20 18 25 25 H 1.48498 * 109.47266 * 239.99938 * 22 20 18 26 26 C 1.47843 * 111.00003 * 179.00482 * 13 12 11 27 27 N 1.31984 * 119.51308 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.46915 * 269.97872 * 1 2 3 29 29 H 1.08996 * 109.47321 * 29.97570 * 1 2 3 30 30 H 1.08997 * 109.47414 * 149.98001 * 1 2 3 31 31 H 1.08000 * 120.40331 * 359.97438 * 3 2 1 32 32 H 1.08000 * 120.51272 * 180.26383 * 11 4 3 33 33 H 1.09002 * 109.88998 * 356.14563 * 14 13 12 34 34 H 1.09003 * 109.88733 * 117.17224 * 14 13 12 35 35 H 1.09005 * 110.70342 * 96.18020 * 15 14 13 36 36 H 1.08997 * 110.70605 * 219.41644 * 15 14 13 37 37 H 0.96706 * 113.99681 * 292.30288 * 17 16 15 38 38 H 0.97004 * 119.99744 * 179.97438 * 21 20 18 39 39 H 1.08996 * 110.37823 * 265.19379 * 26 13 12 40 40 H 1.09002 * 110.37399 * 27.53895 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1861 1.1997 0.0000 4 6 3.5851 1.1918 -0.0005 5 6 4.3537 2.4619 0.0000 6 7 5.6881 2.5902 0.0054 7 7 5.9513 3.8530 0.0003 8 7 4.8446 4.5106 0.0011 9 1 4.7664 5.4774 0.0016 10 7 3.8569 3.6828 0.0010 11 6 4.2388 -0.0399 0.0043 12 6 3.4806 -1.2037 -0.0015 13 7 4.1176 -2.4396 -0.0020 14 6 4.9733 -2.5924 -1.1929 15 6 4.5115 -3.8661 -1.9317 16 6 3.7913 -4.6727 -0.8156 17 8 4.7326 -5.4052 -0.0287 18 6 2.7484 -5.5913 -1.3984 19 1 1.7010 -5.4085 -1.2085 20 6 3.1314 -6.6649 -2.1739 21 7 4.4068 -6.8872 -2.4054 22 14 1.8387 -7.8040 -2.8957 23 1 0.4877 -7.3393 -2.4905 24 1 1.9415 -7.7936 -4.3772 25 1 2.0592 -9.1841 -2.3938 26 6 3.1336 -3.5428 0.0155 27 7 2.1572 -1.1486 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5141 31 1 1.6447 2.1342 -0.0004 32 1 5.3177 -0.0880 0.0083 33 1 4.8616 -1.7251 -1.8436 34 1 6.0152 -2.6967 -0.8899 35 1 3.8178 -3.6159 -2.7344 36 1 5.3674 -4.4189 -2.3189 37 1 5.1702 -6.1233 -0.5064 38 1 4.6762 -7.6429 -2.9507 39 1 2.9566 -3.8774 1.0376 40 1 2.1994 -3.2255 -0.4480 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609386321.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:06 Heat of formation + Delta-G solvation = 104.819243 kcal Electronic energy + Delta-G solvation = -25981.077558 eV Core-core repulsion = 22219.341117 eV Total energy + Delta-G solvation = -3761.736441 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.55876 -41.83339 -39.71209 -36.76459 -35.82429 -35.03748 -34.10083 -33.45592 -32.61400 -30.58365 -30.02901 -28.38278 -26.82746 -25.81862 -25.52408 -23.86319 -22.58064 -21.66192 -21.30919 -20.13061 -19.21413 -18.22667 -17.94966 -17.50594 -17.02926 -16.87243 -16.68914 -15.97124 -15.67203 -15.30085 -15.19714 -14.68241 -14.36095 -14.24849 -13.89499 -13.58789 -13.46676 -13.27349 -13.17534 -13.03900 -12.88451 -12.84682 -12.62114 -12.55036 -12.38065 -12.28147 -12.22831 -12.21348 -11.89514 -11.18532 -10.70036 -10.60401 -10.43810 -10.33912 -10.07591 -9.04436 -8.22245 -6.36774 -0.46703 0.09992 0.11087 1.24324 1.33249 1.40985 1.44354 1.55436 2.37003 2.43280 2.57604 2.85149 3.01728 3.06678 3.41811 3.86648 3.89881 3.95757 4.04933 4.13472 4.22291 4.25726 4.30952 4.41433 4.61048 4.65587 4.76117 4.81052 4.86676 4.94649 5.07051 5.10496 5.15921 5.21469 5.46036 5.49987 5.55223 5.57221 5.63925 5.81781 6.12833 6.24466 6.67816 7.02273 7.04678 7.34663 7.51806 8.84180 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.021950 B = 0.003238 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.307636 B = 8645.105172 C = 9456.184511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.148 3.852 3 C -0.158 4.158 4 C 0.047 3.953 5 C 0.208 3.792 6 N -0.289 5.289 7 N -0.053 5.053 8 N -0.194 5.194 9 H 0.497 0.503 10 N -0.275 5.275 11 C -0.158 4.158 12 C 0.305 3.695 13 N -0.476 5.476 14 C 0.061 3.939 15 C -0.136 4.136 16 C 0.235 3.765 17 O -0.591 6.591 18 C -0.556 4.556 19 H 0.055 0.945 20 C 0.030 3.970 21 N -0.913 5.913 22 Si 0.962 3.038 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.278 1.278 26 C 0.076 3.924 27 N -0.532 5.532 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.172 0.828 32 H 0.145 0.855 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.377 0.623 38 H 0.271 0.729 39 H 0.057 0.943 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.688 23.223 2.255 23.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.009 3.991 3 C -0.181 4.181 4 C 0.035 3.965 5 C -0.072 4.072 6 N -0.161 5.161 7 N -0.048 5.048 8 N -0.045 5.045 9 H 0.357 0.643 10 N -0.128 5.128 11 C -0.183 4.183 12 C 0.073 3.927 13 N -0.192 5.192 14 C -0.064 4.064 15 C -0.175 4.175 16 C 0.195 3.805 17 O -0.400 6.400 18 C -0.594 4.594 19 H 0.074 0.926 20 C -0.170 4.170 21 N -0.553 5.553 22 Si 0.788 3.212 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.204 1.204 26 C -0.050 4.050 27 N -0.248 5.248 28 H 0.111 0.889 29 H 0.125 0.875 30 H 0.087 0.913 31 H 0.189 0.811 32 H 0.162 0.838 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.228 0.772 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.292 23.064 3.067 23.499 hybrid contribution -0.340 -0.349 -1.323 1.410 sum -3.632 22.715 1.744 23.070 Atomic orbital electron populations 1.20843 0.85954 1.04583 1.04372 1.21630 0.98517 0.86696 0.92266 1.21995 0.91961 1.00559 1.03566 1.17362 0.92507 0.86910 0.99673 1.23351 0.88433 0.92217 1.03229 1.76156 1.13674 1.08093 1.18189 1.78904 1.12084 0.98764 1.15017 1.47824 0.99936 1.13455 1.43332 0.64288 1.74874 1.17281 0.99747 1.20934 1.21440 1.01671 0.90079 1.05150 1.20013 0.88232 0.90923 0.93491 1.60704 1.20060 1.00406 1.38080 1.22865 0.97286 0.98124 0.88100 1.23142 1.00349 0.95365 0.98671 1.19843 0.86302 0.88147 0.86232 1.86104 1.59699 1.50487 1.43719 1.21787 0.93575 1.12252 1.31830 0.92633 1.25693 0.97593 0.98406 0.95337 1.69663 1.15844 1.30276 1.39528 0.85444 0.79354 0.78464 0.77961 1.19518 1.20297 1.20408 1.22835 0.93992 0.88178 1.00043 1.67424 1.09139 1.31572 1.16713 0.88853 0.87514 0.91305 0.81083 0.83761 0.91693 0.89704 0.93232 0.91627 0.77176 0.91964 0.92439 0.90028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.86 10.16 71.24 0.72 -1.13 16 2 C 0.15 3.92 6.77 42.44 0.29 4.20 16 3 C -0.16 -3.60 9.41 22.58 0.21 -3.39 16 4 C 0.05 1.24 5.91 -19.86 -0.12 1.12 16 5 C 0.21 4.96 7.97 137.38 1.09 6.06 16 6 N -0.29 -7.39 12.32 -52.18 -0.64 -8.04 16 7 N -0.05 -1.03 13.47 37.02 0.50 -0.53 16 8 N -0.19 -2.39 7.90 37.02 0.29 -2.09 16 9 H 0.50 0.64 8.96 -347.54 -3.12 -2.48 16 10 N -0.28 -4.89 12.17 -52.13 -0.63 -5.52 16 11 C -0.16 -4.99 8.74 22.72 0.20 -4.79 16 12 C 0.30 11.20 6.14 132.97 0.82 12.02 16 13 N -0.48 -19.87 5.20 -691.87 -3.60 -23.47 16 14 C 0.06 2.46 6.44 86.65 0.56 3.02 16 15 C -0.14 -6.40 5.65 31.87 0.18 -6.22 16 16 C 0.24 12.12 0.89 -10.06 -0.01 12.11 16 17 O -0.59 -32.25 13.18 -148.98 -1.96 -34.21 16 18 C -0.56 -30.49 8.25 25.60 0.21 -30.28 16 19 H 0.06 3.06 7.77 -2.91 -0.02 3.04 16 20 C 0.03 1.59 5.29 84.65 0.45 2.04 16 21 N -0.91 -48.99 10.78 21.45 0.23 -48.76 16 22 Si 0.96 42.44 29.54 68.60 2.03 44.47 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 25 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 26 C 0.08 3.57 5.55 86.78 0.48 4.05 16 27 N -0.53 -18.74 8.06 -181.57 -1.46 -20.20 16 28 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.11 1.27 8.07 -2.39 -0.02 1.25 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.17 2.73 7.97 -2.91 -0.02 2.71 16 32 H 0.14 4.51 7.91 -2.91 -0.02 4.48 16 33 H 0.06 2.34 7.17 -2.39 -0.02 2.32 16 34 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 35 H 0.05 2.37 8.04 -2.38 -0.02 2.35 16 36 H 0.07 3.23 7.84 -2.39 -0.02 3.21 16 37 H 0.38 20.89 6.93 -74.05 -0.51 20.37 16 38 H 0.27 13.75 8.31 -92.71 -0.77 12.97 16 39 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 40 H 0.08 3.85 6.43 -2.39 -0.02 3.84 16 Total: -1.00 -67.54 339.07 -2.68 -70.22 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: -2.51 Total: 29.34 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 5.09 Total: -1.20 kcal Atomic # 7 Polarization: -103.30 SS G_CDS: -5.31 Total: -108.61 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -1.96 Total: -34.21 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -67.54 -2.68 -70.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609386321.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.035 kcal (2) G-P(sol) polarization free energy of solvation -67.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds