Wall clock time and date at job start Tue Mar 31 2020 10:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37860 * 119.51365 * 2 1 4 4 C 1.39891 * 119.19144 * 180.20697 * 3 2 1 5 5 C 1.48467 * 120.85977 * 179.79456 * 4 3 2 6 6 N 1.34041 * 126.67395 * 179.69117 * 5 4 3 7 7 N 1.28989 * 107.27009 * 179.77925 * 6 5 4 8 8 N 1.28733 * 108.94009 * 0.39357 * 7 6 5 9 9 H 0.97001 * 125.34363 * 179.86910 * 8 7 6 10 10 N 1.28874 * 109.31714 * 359.59629 * 8 7 6 11 11 C 1.39435 * 118.28273 * 359.51590 * 4 3 2 12 12 C 1.38910 * 118.95843 * 0.25108 * 11 4 3 13 13 N 1.39033 * 119.65010 * 179.97438 * 12 11 4 14 14 C 1.47443 * 110.99775 * 59.87933 * 13 12 11 15 15 C 1.54324 * 107.23431 * 123.25627 * 14 13 12 16 16 C 1.55143 * 103.01808 * 22.28333 * 15 14 13 17 17 O 1.42902 * 110.99025 * 82.47607 * 16 15 14 18 18 C 1.50700 * 110.98776 * 206.25624 * 16 15 14 19 19 H 1.07996 * 119.99838 * 118.55222 * 18 16 15 20 20 C 1.37878 * 120.00056 * 298.54389 * 18 16 15 21 21 N 1.31515 * 119.99804 * 0.02562 * 20 18 16 22 22 Si 1.86792 * 119.99990 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47527 * 89.99828 * 22 20 18 24 24 H 1.48505 * 109.47014 * 210.00272 * 22 20 18 25 25 H 1.48506 * 109.47285 * 329.99976 * 22 20 18 26 26 C 1.47850 * 111.00059 * 180.71869 * 13 12 11 27 27 N 1.31989 * 119.51335 * 179.71217 * 2 1 3 28 28 H 1.08998 * 109.47203 * 270.28063 * 1 2 3 29 29 H 1.08999 * 109.46697 * 30.28675 * 1 2 3 30 30 H 1.08999 * 109.46892 * 150.28069 * 1 2 3 31 31 H 1.08001 * 120.40238 * 359.97438 * 3 2 1 32 32 H 1.07999 * 120.52528 * 180.23624 * 11 4 3 33 33 H 1.09002 * 109.89004 * 242.66336 * 14 13 12 34 34 H 1.08998 * 109.89007 * 3.84696 * 14 13 12 35 35 H 1.09000 * 110.70269 * 140.66481 * 15 14 13 36 36 H 1.08999 * 110.70486 * 263.72706 * 15 14 13 37 37 H 0.96707 * 113.99763 * 61.45225 * 17 16 15 38 38 H 0.97001 * 119.99741 * 180.02562 * 21 20 18 39 39 H 1.08993 * 110.37113 * 332.47127 * 26 13 12 40 40 H 1.08994 * 110.36909 * 94.81006 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1862 1.1997 0.0000 4 6 3.5851 1.1919 -0.0044 5 6 4.3537 2.4620 -0.0091 6 7 5.6880 2.5903 -0.0078 7 7 5.9513 3.8530 -0.0180 8 7 4.8446 4.5106 -0.0172 9 1 4.7664 5.4775 -0.0218 10 7 3.8568 3.6829 -0.0151 11 6 4.2388 -0.0397 0.0017 12 6 3.4807 -1.2036 0.0066 13 7 4.1177 -2.4394 0.0122 14 6 4.9734 -2.5873 1.2037 15 6 4.5076 -3.8574 1.9464 16 6 3.7914 -4.6692 0.8351 17 8 4.7327 -5.4057 0.0518 18 6 2.7485 -5.5848 1.4225 19 1 1.7100 -5.4647 1.1513 20 6 3.1201 -6.5760 2.3060 21 7 4.3846 -6.7220 2.6364 22 14 1.8275 -7.7113 3.0335 23 1 1.6618 -8.8987 2.1573 24 1 2.2582 -8.1498 4.3854 25 1 0.5346 -6.9879 3.1363 26 6 3.1337 -3.5428 -0.0006 27 7 2.1573 -1.1486 0.0058 28 1 -0.3633 0.0050 1.0276 29 1 -0.3633 0.8874 -0.5183 30 1 -0.3633 -0.8925 -0.5095 31 1 1.6448 2.1342 -0.0004 32 1 5.3178 -0.0880 0.0024 33 1 6.0150 -2.6957 0.9012 34 1 4.8616 -1.7174 1.8508 35 1 5.3617 -4.4101 2.3377 36 1 3.8149 -3.6026 2.7484 37 1 5.2388 -6.0578 0.5557 38 1 4.6461 -7.4195 3.2577 39 1 2.1996 -3.2236 0.4614 40 1 2.9568 -3.8816 -1.0214 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609386323.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:09 Heat of formation + Delta-G solvation = 127.993589 kcal Electronic energy + Delta-G solvation = -25993.033652 eV Core-core repulsion = 22232.302126 eV Total energy + Delta-G solvation = -3760.731526 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.69771 -40.53297 -38.13801 -35.06126 -34.81183 -34.09436 -32.18942 -32.11469 -31.46569 -29.00326 -28.34015 -27.14565 -25.43333 -24.62384 -24.36051 -22.46678 -21.48097 -20.17489 -19.68523 -19.11691 -17.38175 -17.34204 -16.51116 -16.26712 -15.60923 -15.27078 -14.87346 -14.64025 -14.27266 -14.12929 -13.86815 -13.38697 -12.78006 -12.67637 -12.63230 -12.57519 -12.17552 -11.96825 -11.86410 -11.65994 -11.57895 -11.32175 -11.26562 -11.25067 -11.02349 -10.82226 -10.45651 -10.40359 -10.02646 -9.45062 -9.28870 -9.21529 -9.04123 -8.58915 -8.10580 -7.63354 -6.20073 -4.27262 0.54404 1.00632 1.28224 1.96884 2.28194 3.24543 3.31524 3.34973 3.39255 3.79235 3.93122 4.15351 4.32264 4.65752 4.91537 5.06001 5.07465 5.18596 5.25038 5.28666 5.54475 5.64041 5.66152 5.68746 5.84369 5.90922 6.03145 6.06453 6.14983 6.16066 6.23220 6.39392 6.61675 6.64175 6.95490 7.02125 7.20829 7.42932 7.47071 7.71375 7.82468 7.89950 8.12673 8.29221 8.75398 9.40550 9.51201 10.87272 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.021612 B = 0.003258 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.267238 B = 8591.525138 C = 9381.280789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.157 3.843 3 C -0.179 4.179 4 C 0.044 3.956 5 C 0.224 3.776 6 N -0.259 5.259 7 N -0.050 5.050 8 N -0.229 5.229 9 H 0.475 0.525 10 N -0.288 5.288 11 C -0.154 4.154 12 C 0.332 3.668 13 N -0.468 5.468 14 C 0.050 3.950 15 C -0.143 4.143 16 C 0.250 3.750 17 O -0.580 6.580 18 C -0.531 4.531 19 H 0.063 0.937 20 C 0.071 3.929 21 N -0.896 5.896 22 Si 0.900 3.100 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.273 1.273 26 C 0.061 3.939 27 N -0.503 5.503 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.138 0.862 32 H 0.147 0.853 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.378 0.622 38 H 0.266 0.734 39 H 0.087 0.913 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.259 20.358 -2.862 20.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.018 3.982 3 C -0.203 4.203 4 C 0.033 3.967 5 C -0.056 4.056 6 N -0.132 5.132 7 N -0.045 5.045 8 N -0.075 5.075 9 H 0.330 0.670 10 N -0.140 5.140 11 C -0.179 4.179 12 C 0.099 3.901 13 N -0.184 5.184 14 C -0.075 4.075 15 C -0.182 4.182 16 C 0.209 3.791 17 O -0.388 6.388 18 C -0.570 4.570 19 H 0.081 0.919 20 C -0.131 4.131 21 N -0.535 5.535 22 Si 0.728 3.272 23 H -0.204 1.204 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.064 4.064 27 N -0.219 5.219 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.227 0.773 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.927 20.121 -3.661 20.542 hybrid contribution -0.645 0.312 1.457 1.623 sum -2.571 20.433 -2.204 20.712 Atomic orbital electron populations 1.20720 0.88572 1.03488 1.03229 1.20988 0.96846 0.87216 0.93156 1.21651 0.92467 0.99751 1.06390 1.17253 0.91803 0.86963 1.00644 1.23552 0.88470 0.91953 1.01618 1.76157 1.13127 1.06866 1.17029 1.78949 1.11481 0.99319 1.14729 1.47748 1.01094 1.12513 1.46113 0.67047 1.74929 1.16996 1.00406 1.21668 1.21528 1.01818 0.89979 1.04604 1.20053 0.87549 0.91388 0.91098 1.60713 1.20182 0.99952 1.37505 1.23009 0.97070 0.99364 0.88039 1.23300 1.01715 0.94009 0.99163 1.19597 0.86508 0.87656 0.85327 1.86160 1.56259 1.55701 1.40652 1.21496 0.94220 1.15449 1.25810 0.91858 1.24995 0.95669 0.96997 0.95466 1.69730 1.15474 1.33351 1.34981 0.86464 0.81658 0.80867 0.78248 1.20447 1.21182 1.19763 1.23150 0.93754 0.87904 1.01596 1.67482 1.09176 1.29409 1.15860 0.90260 0.90792 0.90110 0.84405 0.83568 0.90366 0.93367 0.89755 0.92130 0.77314 0.92387 0.89446 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.09 10.16 36.01 0.37 -0.72 16 2 C 0.16 2.23 6.77 -82.66 -0.56 1.67 16 3 C -0.18 -2.31 9.41 -39.10 -0.37 -2.67 16 4 C 0.04 0.63 5.91 -104.62 -0.62 0.01 16 5 C 0.22 2.93 7.97 -156.31 -1.25 1.69 16 6 N -0.26 -3.52 12.32 32.16 0.40 -3.12 16 7 N -0.05 -0.54 13.47 60.35 0.81 0.27 16 8 N -0.23 -1.79 7.90 60.35 0.48 -1.31 16 9 H 0.48 1.20 8.96 -340.36 -3.05 -1.85 16 10 N -0.29 -3.05 12.17 32.17 0.39 -2.66 16 11 C -0.15 -2.46 8.72 -38.89 -0.34 -2.80 16 12 C 0.33 6.06 6.15 -155.03 -0.95 5.11 16 13 N -0.47 -9.50 5.20 -170.04 -0.88 -10.38 16 14 C 0.05 0.98 6.44 -2.83 -0.02 0.96 16 15 C -0.14 -3.25 5.37 -24.90 -0.13 -3.38 16 16 C 0.25 6.18 0.87 -89.63 -0.08 6.10 16 17 O -0.58 -15.04 13.16 -35.23 -0.46 -15.51 16 18 C -0.53 -14.18 8.27 -34.44 -0.28 -14.46 16 19 H 0.06 1.69 7.79 -52.49 -0.41 1.28 16 20 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 21 N -0.90 -23.62 10.75 55.43 0.60 -23.02 16 22 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 26 C 0.06 1.39 5.55 -2.30 -0.01 1.38 16 27 N -0.50 -8.90 8.06 -8.74 -0.07 -8.97 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.14 1.43 7.97 -52.49 -0.42 1.01 16 32 H 0.15 2.27 7.90 -52.49 -0.41 1.85 16 33 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.05 0.86 7.16 -51.93 -0.37 0.49 16 35 H 0.08 2.00 7.54 -51.93 -0.39 1.61 16 36 H 0.06 1.42 8.04 -51.93 -0.42 1.00 16 37 H 0.38 9.79 7.56 45.56 0.34 10.14 16 38 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 39 H 0.09 1.99 6.44 -51.93 -0.33 1.65 16 40 H 0.07 1.71 8.14 -51.93 -0.42 1.28 16 LS Contribution 339.07 15.07 5.11 5.11 Total: -1.00 -30.63 339.07 -9.70 -40.34 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -6.71 Total: 9.03 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -4.34 Total: -5.35 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 1.72 Total: -49.19 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.46 Total: -15.51 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.63 -9.70 -40.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609386323.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.331 kcal (2) G-P(sol) polarization free energy of solvation -30.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds