Wall clock time and date at job start Tue Mar 31 2020 10:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37860 * 119.51365 * 2 1 4 4 C 1.39891 * 119.19144 * 180.20697 * 3 2 1 5 5 C 1.48467 * 120.85977 * 179.79456 * 4 3 2 6 6 N 1.34041 * 126.67395 * 179.69117 * 5 4 3 7 7 N 1.28989 * 107.27009 * 179.77925 * 6 5 4 8 8 N 1.28733 * 108.94009 * 0.39357 * 7 6 5 9 9 H 0.97001 * 125.34363 * 179.86910 * 8 7 6 10 10 N 1.28874 * 109.31714 * 359.59629 * 8 7 6 11 11 C 1.39435 * 118.28273 * 359.51590 * 4 3 2 12 12 C 1.38910 * 118.95843 * 0.25108 * 11 4 3 13 13 N 1.39033 * 119.65010 * 179.97438 * 12 11 4 14 14 C 1.47443 * 110.99775 * 59.87933 * 13 12 11 15 15 C 1.54324 * 107.23431 * 123.25627 * 14 13 12 16 16 C 1.55143 * 103.01808 * 22.28333 * 15 14 13 17 17 O 1.42902 * 110.99025 * 82.47607 * 16 15 14 18 18 C 1.50700 * 110.98776 * 206.25624 * 16 15 14 19 19 H 1.07996 * 119.99838 * 118.55222 * 18 16 15 20 20 C 1.37878 * 120.00056 * 298.54389 * 18 16 15 21 21 N 1.31515 * 119.99804 * 0.02562 * 20 18 16 22 22 Si 1.86792 * 119.99990 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47527 * 89.99828 * 22 20 18 24 24 H 1.48505 * 109.47014 * 210.00272 * 22 20 18 25 25 H 1.48506 * 109.47285 * 329.99976 * 22 20 18 26 26 C 1.47850 * 111.00059 * 180.71869 * 13 12 11 27 27 N 1.31989 * 119.51335 * 179.71217 * 2 1 3 28 28 H 1.08998 * 109.47203 * 270.28063 * 1 2 3 29 29 H 1.08999 * 109.46697 * 30.28675 * 1 2 3 30 30 H 1.08999 * 109.46892 * 150.28069 * 1 2 3 31 31 H 1.08001 * 120.40238 * 359.97438 * 3 2 1 32 32 H 1.07999 * 120.52528 * 180.23624 * 11 4 3 33 33 H 1.09002 * 109.89004 * 242.66336 * 14 13 12 34 34 H 1.08998 * 109.89007 * 3.84696 * 14 13 12 35 35 H 1.09000 * 110.70269 * 140.66481 * 15 14 13 36 36 H 1.08999 * 110.70486 * 263.72706 * 15 14 13 37 37 H 0.96707 * 113.99763 * 61.45225 * 17 16 15 38 38 H 0.97001 * 119.99741 * 180.02562 * 21 20 18 39 39 H 1.08993 * 110.37113 * 332.47127 * 26 13 12 40 40 H 1.08994 * 110.36909 * 94.81006 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1862 1.1997 0.0000 4 6 3.5851 1.1919 -0.0044 5 6 4.3537 2.4620 -0.0091 6 7 5.6880 2.5903 -0.0078 7 7 5.9513 3.8530 -0.0180 8 7 4.8446 4.5106 -0.0172 9 1 4.7664 5.4775 -0.0218 10 7 3.8568 3.6829 -0.0151 11 6 4.2388 -0.0397 0.0017 12 6 3.4807 -1.2036 0.0066 13 7 4.1177 -2.4394 0.0122 14 6 4.9734 -2.5873 1.2037 15 6 4.5076 -3.8574 1.9464 16 6 3.7914 -4.6692 0.8351 17 8 4.7327 -5.4057 0.0518 18 6 2.7485 -5.5848 1.4225 19 1 1.7100 -5.4647 1.1513 20 6 3.1201 -6.5760 2.3060 21 7 4.3846 -6.7220 2.6364 22 14 1.8275 -7.7113 3.0335 23 1 1.6618 -8.8987 2.1573 24 1 2.2582 -8.1498 4.3854 25 1 0.5346 -6.9879 3.1363 26 6 3.1337 -3.5428 -0.0006 27 7 2.1573 -1.1486 0.0058 28 1 -0.3633 0.0050 1.0276 29 1 -0.3633 0.8874 -0.5183 30 1 -0.3633 -0.8925 -0.5095 31 1 1.6448 2.1342 -0.0004 32 1 5.3178 -0.0880 0.0024 33 1 6.0150 -2.6957 0.9012 34 1 4.8616 -1.7174 1.8508 35 1 5.3617 -4.4101 2.3377 36 1 3.8149 -3.6026 2.7484 37 1 5.2388 -6.0578 0.5557 38 1 4.6461 -7.4195 3.2577 39 1 2.1996 -3.2236 0.4614 40 1 2.9568 -3.8816 -1.0214 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609386323.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:08 Heat of formation + Delta-G solvation = 104.984895 kcal Electronic energy + Delta-G solvation = -25994.031384 eV Core-core repulsion = 22232.302126 eV Total energy + Delta-G solvation = -3761.729258 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.55924 -41.83668 -39.72648 -36.74486 -35.82341 -35.03733 -34.17116 -33.44040 -32.60932 -30.55613 -30.02953 -28.37840 -26.82232 -25.81624 -25.52367 -23.86014 -22.58335 -21.66425 -21.32715 -20.13066 -19.15721 -18.22682 -17.94627 -17.50488 -17.05398 -16.83123 -16.69562 -16.00602 -15.68327 -15.30988 -15.19745 -14.68983 -14.33337 -14.26074 -13.90147 -13.59490 -13.45795 -13.28238 -13.17445 -13.03317 -12.87966 -12.85916 -12.64593 -12.54518 -12.36897 -12.26437 -12.23442 -12.21789 -11.87103 -11.14277 -10.70910 -10.59826 -10.43770 -10.32802 -10.09174 -9.04476 -8.20455 -6.35218 -0.46647 0.09980 0.11055 1.24342 1.33268 1.42168 1.44232 1.53632 2.37384 2.43453 2.57776 2.85165 3.02933 3.07367 3.41845 3.85548 3.89647 3.95210 4.05033 4.13030 4.22980 4.26248 4.30993 4.41594 4.60971 4.65680 4.76723 4.81641 4.86063 4.94882 5.07589 5.10425 5.16545 5.21969 5.46240 5.51837 5.55381 5.57278 5.64944 5.81452 6.16548 6.24277 6.69075 7.02294 7.04714 7.35399 7.45853 8.85321 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.021612 B = 0.003258 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.267238 B = 8591.525138 C = 9381.280789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.148 3.852 3 C -0.158 4.158 4 C 0.047 3.953 5 C 0.208 3.792 6 N -0.289 5.289 7 N -0.053 5.053 8 N -0.194 5.194 9 H 0.497 0.503 10 N -0.275 5.275 11 C -0.158 4.158 12 C 0.305 3.695 13 N -0.476 5.476 14 C 0.060 3.940 15 C -0.132 4.132 16 C 0.235 3.765 17 O -0.588 6.588 18 C -0.558 4.558 19 H 0.053 0.947 20 C 0.032 3.968 21 N -0.909 5.909 22 Si 0.959 3.041 23 H -0.277 1.277 24 H -0.279 1.279 25 H -0.271 1.271 26 C 0.076 3.924 27 N -0.533 5.533 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.070 0.930 31 H 0.172 0.828 32 H 0.145 0.855 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.046 0.954 37 H 0.374 0.626 38 H 0.269 0.731 39 H 0.081 0.919 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.416 23.089 -2.632 23.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.009 3.991 3 C -0.181 4.181 4 C 0.035 3.965 5 C -0.072 4.072 6 N -0.161 5.161 7 N -0.048 5.048 8 N -0.046 5.046 9 H 0.357 0.643 10 N -0.128 5.128 11 C -0.183 4.183 12 C 0.073 3.927 13 N -0.192 5.192 14 C -0.065 4.065 15 C -0.171 4.171 16 C 0.195 3.805 17 O -0.396 6.396 18 C -0.596 4.596 19 H 0.071 0.929 20 C -0.169 4.169 21 N -0.548 5.548 22 Si 0.785 3.215 23 H -0.202 1.202 24 H -0.205 1.205 25 H -0.196 1.196 26 C -0.050 4.050 27 N -0.249 5.249 28 H 0.109 0.891 29 H 0.126 0.874 30 H 0.089 0.911 31 H 0.189 0.811 32 H 0.163 0.837 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.222 0.778 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.073 22.901 -3.438 23.360 hybrid contribution -0.343 -0.307 1.370 1.445 sum -3.416 22.594 -2.068 22.944 Atomic orbital electron populations 1.20844 0.85966 1.04666 1.04276 1.21633 0.98515 0.86704 0.92276 1.21994 0.91972 1.00552 1.03572 1.17360 0.92502 0.86919 0.99673 1.23349 0.88434 0.92215 1.03231 1.76150 1.13668 1.08098 1.18182 1.78905 1.12080 0.98761 1.15019 1.47826 0.99937 1.13455 1.43334 0.64289 1.74875 1.17283 0.99750 1.20933 1.21445 1.01673 0.90077 1.05143 1.20015 0.88226 0.90926 0.93494 1.60712 1.20039 1.00393 1.38094 1.22910 0.97320 0.98250 0.88059 1.23058 1.00489 0.95145 0.98398 1.19787 0.86355 0.88038 0.86316 1.86150 1.56480 1.55806 1.41117 1.21717 0.94261 1.16807 1.26821 0.92850 1.25662 0.97542 0.98063 0.95609 1.69809 1.16537 1.33559 1.34927 0.85540 0.79424 0.78915 0.77629 1.20247 1.20471 1.19577 1.22824 0.94020 0.88179 0.99980 1.67425 1.09153 1.31573 1.16715 0.89150 0.87398 0.91145 0.81087 0.83735 0.89578 0.91757 0.91219 0.93541 0.77773 0.92153 0.90065 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.87 10.16 71.24 0.72 -1.15 16 2 C 0.15 3.93 6.77 42.45 0.29 4.22 16 3 C -0.16 -3.62 9.41 22.58 0.21 -3.41 16 4 C 0.05 1.24 5.91 -19.86 -0.12 1.12 16 5 C 0.21 4.97 7.97 137.38 1.09 6.07 16 6 N -0.29 -7.39 12.32 -52.18 -0.64 -8.03 16 7 N -0.05 -1.03 13.47 37.02 0.50 -0.53 16 8 N -0.19 -2.39 7.90 37.02 0.29 -2.10 16 9 H 0.50 0.65 8.96 -347.53 -3.12 -2.47 16 10 N -0.28 -4.90 12.17 -52.13 -0.63 -5.53 16 11 C -0.16 -4.99 8.72 22.72 0.20 -4.80 16 12 C 0.30 11.21 6.15 132.98 0.82 12.03 16 13 N -0.48 -19.81 5.20 -691.88 -3.60 -23.41 16 14 C 0.06 2.39 6.44 86.65 0.56 2.94 16 15 C -0.13 -6.19 5.37 31.78 0.17 -6.02 16 16 C 0.24 12.07 0.87 -10.15 -0.01 12.06 16 17 O -0.59 -31.60 13.16 -148.98 -1.96 -33.56 16 18 C -0.56 -30.64 8.27 25.60 0.21 -30.43 16 19 H 0.05 2.95 7.79 -2.91 -0.02 2.93 16 20 C 0.03 1.71 5.29 84.65 0.45 2.16 16 21 N -0.91 -48.66 10.75 21.45 0.23 -48.43 16 22 Si 0.96 42.54 29.54 68.60 2.03 44.56 16 23 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 C 0.08 3.59 5.55 86.77 0.48 4.07 16 27 N -0.53 -18.80 8.06 -181.56 -1.46 -20.27 16 28 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.11 1.27 8.08 -2.39 -0.02 1.25 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.17 2.75 7.97 -2.91 -0.02 2.72 16 32 H 0.14 4.51 7.90 -2.91 -0.02 4.49 16 33 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 34 H 0.06 2.32 7.16 -2.39 -0.02 2.31 16 35 H 0.07 3.42 7.54 -2.39 -0.02 3.41 16 36 H 0.05 2.25 8.04 -2.39 -0.02 2.23 16 37 H 0.37 20.12 7.56 -74.05 -0.56 19.56 16 38 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 39 H 0.08 3.85 6.44 -2.39 -0.02 3.83 16 40 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -67.43 339.07 -2.73 -70.17 By element: Atomic # 1 Polarization: 30.85 SS G_CDS: -2.56 Total: 28.29 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: 5.08 Total: -1.15 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -5.32 Total: -108.31 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -1.96 Total: -33.56 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -67.43 -2.73 -70.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609386323.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.151 kcal (2) G-P(sol) polarization free energy of solvation -67.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds