Wall clock time and date at job start Tue Mar 31 2020 10:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38141 * 120.03483 * 2 1 4 4 C 1.38253 * 120.06557 * 179.74480 * 3 2 1 5 5 C 1.38298 * 120.13108 * 0.56084 * 4 3 2 6 6 C 1.38101 * 120.06626 * 359.69427 * 5 4 3 7 7 C 1.38803 * 120.03264 * 180.28025 * 2 1 3 8 8 N 1.40206 * 120.06775 * 359.97438 * 7 2 1 9 9 C 1.37865 * 126.53240 * 244.69227 * 8 7 2 10 10 C 1.34398 * 106.94132 * 179.83539 * 9 8 7 11 11 N 1.34370 * 108.41068 * 0.42711 * 10 9 8 12 12 C 1.31283 * 109.35693 * 359.72296 * 11 10 9 13 13 S 1.76202 * 125.82047 * 179.97438 * 12 11 10 14 14 C 1.81000 * 100.00000 * 0.02562 * 13 12 11 15 15 C 1.52997 * 109.47041 * 180.02562 * 14 13 12 16 16 C 1.53006 * 109.46833 * 299.99612 * 15 14 13 17 17 C 1.52999 * 109.47279 * 59.99674 * 15 14 13 18 18 C 1.50699 * 109.47037 * 180.02562 * 15 14 13 19 19 H 1.07999 * 119.99943 * 359.97438 * 18 15 14 20 20 C 1.37881 * 119.99867 * 179.97438 * 18 15 14 21 21 N 1.31511 * 120.00268 * 0.02562 * 20 18 15 22 22 Si 1.86807 * 119.99987 * 179.97438 * 20 18 15 23 23 H 1.48502 * 109.46590 * 90.00271 * 22 20 18 24 24 H 1.48498 * 109.47175 * 210.00076 * 22 20 18 25 25 H 1.48501 * 109.46833 * 330.00360 * 22 20 18 26 26 H 1.09002 * 109.47152 * 269.72043 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.72144 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.72124 * 1 2 3 29 29 H 1.08002 * 119.96666 * 0.02940 * 3 2 1 30 30 H 1.08005 * 119.93253 * 180.27351 * 4 3 2 31 31 H 1.07998 * 119.96548 * 179.72178 * 5 4 3 32 32 H 1.08001 * 120.03217 * 180.02562 * 6 5 4 33 33 H 1.08002 * 126.52384 * 359.96492 * 9 8 7 34 34 H 1.08001 * 125.78772 * 180.15438 * 10 9 8 35 35 H 1.09001 * 109.46904 * 299.99609 * 14 13 12 36 36 H 1.09000 * 109.47046 * 59.99699 * 14 13 12 37 37 H 1.08997 * 109.46869 * 60.00693 * 16 15 14 38 38 H 1.08998 * 109.46778 * 180.02562 * 16 15 14 39 39 H 1.08992 * 109.47259 * 300.00121 * 16 15 14 40 40 H 1.08998 * 109.46908 * 60.00771 * 17 15 14 41 41 H 1.09004 * 109.46768 * 180.02562 * 17 15 14 42 42 H 1.08999 * 109.47195 * 300.00247 * 17 15 14 43 43 H 0.96997 * 120.00476 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1959 0.0000 4 6 3.5810 1.1967 0.0053 5 6 4.2759 0.0010 -0.0010 6 6 3.5902 -1.1978 -0.0064 7 6 2.2017 -1.2017 -0.0059 8 7 1.5028 -2.4171 -0.0113 9 6 1.5046 -3.3693 0.9857 10 6 0.7034 -4.3673 0.5756 11 7 0.2246 -4.0547 -0.6404 12 6 0.6962 -2.8854 -1.0063 13 16 0.3471 -2.0619 -2.5244 14 6 -0.7602 -3.2713 -3.2907 15 6 -1.2062 -2.7579 -4.6612 16 6 -1.9426 -1.4274 -4.4923 17 6 0.0201 -2.5525 -5.5527 18 6 -2.1287 -3.7646 -5.2989 19 1 -2.3721 -4.6793 -4.7788 20 6 -2.6619 -3.5178 -6.5462 21 7 -2.3651 -2.4042 -7.1797 22 14 -3.8048 -4.7661 -7.3371 23 1 -5.2073 -4.4665 -6.9518 24 1 -3.6709 -4.6936 -8.8142 25 1 -3.4446 -6.1302 -6.8736 26 1 -0.3633 -0.0050 1.0277 27 1 -0.3633 -0.8875 -0.5182 28 1 -0.3633 0.8925 -0.5095 29 1 1.6585 2.1312 0.0005 30 1 4.1194 2.1329 0.0098 31 1 5.3559 0.0047 -0.0014 32 1 4.1334 -2.1312 -0.0109 33 1 2.0452 -3.3211 1.9195 34 1 0.4854 -5.2696 1.1276 35 1 -0.2354 -4.2191 -3.4113 36 1 -1.6336 -3.4180 -2.6553 37 1 -1.2758 -0.6991 -4.0310 38 1 -2.2608 -1.0619 -5.4687 39 1 -2.8162 -1.5737 -3.8572 40 1 0.5446 -3.5004 -5.6730 41 1 -0.2977 -2.1863 -6.5290 42 1 0.6869 -1.8242 -5.0912 43 1 -2.7405 -2.2304 -8.0570 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652521137.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:28 Heat of formation + Delta-G solvation = 69.083170 kcal Electronic energy + Delta-G solvation = -23924.958928 eV Core-core repulsion = 20675.673317 eV Total energy + Delta-G solvation = -3249.285610 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.11088 -40.17456 -37.90606 -35.11099 -33.69823 -33.53404 -30.90657 -30.31601 -27.99429 -27.92024 -27.60831 -27.15827 -24.32780 -23.09435 -22.26084 -22.10478 -20.78391 -19.41124 -17.96453 -17.21331 -17.16637 -16.70016 -16.58615 -15.68662 -15.54965 -15.35124 -15.32937 -14.91339 -14.65713 -14.54374 -14.41712 -14.16865 -13.87471 -13.41217 -13.25263 -13.16626 -13.04761 -12.71132 -12.57103 -12.38439 -12.28743 -12.24108 -12.10312 -11.68678 -11.49316 -11.35079 -11.23731 -10.98585 -10.57755 -10.43251 -10.24176 -9.88984 -9.63045 -8.31291 -8.01681 -6.18502 -0.00141 0.29872 0.35833 0.90207 1.34416 1.43370 1.45973 1.54822 1.89222 2.00375 2.46915 2.62341 3.21305 3.75943 3.78518 3.81401 4.09865 4.27307 4.29377 4.33034 4.34364 4.41218 4.53371 4.59695 4.64985 4.67154 4.71564 4.91668 4.97097 5.01998 5.03188 5.14630 5.16581 5.19735 5.31928 5.42382 5.44984 5.47338 5.62894 5.65718 5.67321 5.79006 6.07988 6.16890 6.18652 6.40798 6.84289 6.86988 7.48750 8.97681 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.019903 B = 0.003678 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.503995 B = 7611.760949 C = 8351.285777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.077 4.077 3 C -0.114 4.114 4 C -0.098 4.098 5 C -0.113 4.113 6 C -0.110 4.110 7 C 0.077 3.923 8 N -0.400 5.400 9 C -0.036 4.036 10 C -0.038 4.038 11 N -0.523 5.523 12 C 0.177 3.823 13 S -0.013 6.013 14 C -0.056 4.056 15 C 0.073 3.927 16 C -0.121 4.121 17 C -0.122 4.122 18 C -0.525 4.525 19 H 0.046 0.954 20 C 0.029 3.971 21 N -0.901 5.901 22 Si 0.948 3.052 23 H -0.277 1.277 24 H -0.281 1.281 25 H -0.275 1.275 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.086 0.914 29 H 0.153 0.847 30 H 0.163 0.837 31 H 0.160 0.840 32 H 0.131 0.869 33 H 0.212 0.788 34 H 0.196 0.804 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.033 0.967 38 H 0.065 0.935 39 H 0.023 0.977 40 H 0.021 0.979 41 H 0.066 0.934 42 H 0.032 0.968 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.180 8.024 17.584 23.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.078 4.078 3 C -0.132 4.132 4 C -0.115 4.115 5 C -0.131 4.131 6 C -0.130 4.130 7 C -0.013 4.013 8 N -0.082 5.082 9 C -0.169 4.169 10 C -0.186 4.186 11 N -0.245 5.245 12 C -0.191 4.191 13 S 0.220 5.780 14 C -0.205 4.205 15 C 0.071 3.929 16 C -0.179 4.179 17 C -0.180 4.180 18 C -0.565 4.565 19 H 0.064 0.936 20 C -0.171 4.171 21 N -0.539 5.539 22 Si 0.775 3.225 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.200 1.200 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.105 0.895 29 H 0.170 0.830 30 H 0.180 0.820 31 H 0.178 0.822 32 H 0.149 0.851 33 H 0.229 0.771 34 H 0.213 0.787 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.084 0.916 39 H 0.042 0.958 40 H 0.040 0.960 41 H 0.084 0.916 42 H 0.051 0.949 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.048 8.759 16.540 22.815 hybrid contribution -0.842 -1.917 0.386 2.129 sum 12.206 6.841 16.926 21.961 Atomic orbital electron populations 1.21050 0.90969 1.04180 1.02586 1.20129 0.96734 0.92299 0.98653 1.21322 0.95140 0.97025 0.99761 1.21707 0.93783 0.99658 0.96394 1.21404 1.01652 0.90886 0.99173 1.21314 0.91237 1.00570 0.99843 1.17862 0.91688 0.83154 1.08563 1.43053 1.35678 1.15250 1.14255 1.23424 1.06856 0.90295 0.96322 1.22824 1.00670 1.01783 0.93351 1.70828 1.26504 1.11796 1.15418 1.25701 0.99462 0.95973 0.97969 1.85367 1.60142 1.26577 1.05927 1.23613 0.98478 0.98280 1.00104 1.18054 0.93387 0.93952 0.87553 1.21719 0.98119 0.96888 1.01173 1.21736 0.96160 0.98070 1.02063 1.21264 1.28346 1.04344 1.02529 0.93598 1.25489 0.97461 0.96946 0.97223 1.69917 1.44624 1.25026 1.14367 0.85710 0.79446 0.79743 0.77634 1.20311 1.20672 1.20013 0.90637 0.92498 0.89480 0.82973 0.81979 0.82215 0.85075 0.77083 0.78674 0.91953 0.91651 0.94808 0.91634 0.95793 0.95952 0.91565 0.94945 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 9.54 71.24 0.68 -2.64 16 2 C -0.08 -1.83 5.74 -19.75 -0.11 -1.94 16 3 C -0.11 -2.00 9.70 22.25 0.22 -1.78 16 4 C -0.10 -1.34 10.04 22.29 0.22 -1.11 16 5 C -0.11 -1.67 10.04 22.25 0.22 -1.45 16 6 C -0.11 -2.28 9.92 22.38 0.22 -2.05 16 7 C 0.08 1.99 5.48 38.08 0.21 2.20 16 8 N -0.40 -11.97 2.45 -346.06 -0.85 -12.82 16 9 C -0.04 -0.91 11.50 82.87 0.95 0.05 16 10 C -0.04 -1.11 11.84 83.43 0.99 -0.13 16 11 N -0.52 -20.14 10.60 -196.23 -2.08 -22.22 16 12 C 0.18 6.55 6.47 179.60 1.16 7.71 16 13 S -0.01 -0.50 16.97 -56.49 -0.96 -1.45 16 14 C -0.06 -2.55 4.14 71.98 0.30 -2.25 16 15 C 0.07 3.61 0.52 -52.93 -0.03 3.59 16 16 C -0.12 -5.85 8.01 71.98 0.58 -5.27 16 17 C -0.12 -5.98 8.01 71.98 0.58 -5.41 16 18 C -0.53 -28.91 8.01 25.60 0.21 -28.70 16 19 H 0.05 2.57 7.74 -2.91 -0.02 2.54 16 20 C 0.03 1.55 5.15 84.66 0.44 1.99 16 21 N -0.90 -49.61 9.35 21.45 0.20 -49.41 16 22 Si 0.95 43.55 29.54 68.60 2.03 45.58 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 26 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.06 1.81 4.26 -2.39 -0.01 1.80 16 28 H 0.09 1.94 8.08 -2.38 -0.02 1.92 16 29 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 30 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 31 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 32 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 33 H 0.21 3.44 8.06 -2.91 -0.02 3.42 16 34 H 0.20 4.39 8.06 -2.91 -0.02 4.37 16 35 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 36 H 0.06 3.10 8.14 -2.40 -0.02 3.08 16 37 H 0.03 1.47 6.91 -2.39 -0.02 1.45 16 38 H 0.06 3.45 6.07 -2.39 -0.01 3.44 16 39 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 3.51 6.07 -2.38 -0.01 3.50 16 42 H 0.03 1.43 6.91 -2.39 -0.02 1.42 16 43 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -65.64 357.76 6.17 -59.47 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 1.00 Total: 18.06 kcal Atomic # 6 Polarization: -44.04 SS G_CDS: 6.83 Total: -37.21 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -2.73 Total: -84.44 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: -0.50 SS G_CDS: -0.96 Total: -1.45 kcal Total: -65.64 6.17 -59.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652521137.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.558 kcal (2) G-P(sol) polarization free energy of solvation -65.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds