Wall clock time and date at job start Tue Mar 31 2020 11:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46884 * 2 1 4 4 C 1.53004 * 109.47075 * 119.99154 * 2 1 3 5 5 H 1.08994 * 109.46911 * 185.00479 * 4 2 1 6 6 C 1.53002 * 109.47276 * 305.00657 * 4 2 1 7 7 N 1.46492 * 109.46986 * 175.00016 * 6 4 2 8 8 C 1.34778 * 120.00096 * 180.02562 * 7 6 4 9 9 O 1.21618 * 119.99776 * 359.97438 * 8 7 6 10 10 C 1.47374 * 120.00311 * 179.97438 * 8 7 6 11 11 C 1.36422 * 127.19332 * 359.95169 * 10 8 7 12 12 O 1.33648 * 108.39435 * 180.02562 * 11 10 8 13 13 C 1.34214 * 110.91297 * 359.97438 * 12 11 10 14 14 C 1.50699 * 125.43794 * 180.02562 * 13 12 11 15 15 F 1.39901 * 109.46906 * 119.97454 * 14 13 12 16 16 F 1.39893 * 109.47561 * 239.97835 * 14 13 12 17 17 C 1.34177 * 109.12495 * 0.02562 * 13 12 11 18 18 N 1.46505 * 109.46858 * 65.00482 * 4 2 1 19 19 C 1.36932 * 119.99769 * 84.99826 * 18 4 2 20 20 H 1.07999 * 120.00432 * 0.02562 * 19 18 4 21 21 C 1.38814 * 119.99961 * 179.97438 * 19 18 4 22 22 N 1.31621 * 119.99855 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46994 * 59.99828 * 23 21 19 25 25 H 1.48499 * 109.47025 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46836 * 300.00032 * 23 21 19 27 27 H 1.08993 * 109.47728 * 300.00552 * 1 2 3 28 28 H 1.09007 * 109.47205 * 60.00848 * 1 2 3 29 29 H 1.08999 * 109.47060 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47508 * 239.99930 * 2 1 3 31 31 H 1.09007 * 109.46507 * 299.99579 * 3 2 1 32 32 H 1.08993 * 109.47388 * 59.99240 * 3 2 1 33 33 H 1.09002 * 109.47139 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47021 * 54.99248 * 6 4 2 35 35 H 1.08997 * 109.46655 * 295.00129 * 6 4 2 36 36 H 0.97006 * 120.00481 * 359.97438 * 7 6 4 37 37 H 1.07992 * 125.79735 * 0.08366 * 11 10 8 38 38 H 1.09003 * 109.47270 * 359.97438 * 14 13 12 39 39 H 1.07999 * 127.02292 * 179.97438 * 17 13 12 40 40 H 0.96994 * 119.99588 * 264.99975 * 18 4 2 41 41 H 0.97000 * 119.99929 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 3.1262 -0.6441 1.2953 6 6 1.4298 -0.0760 2.4954 7 7 1.8226 -0.8393 3.6825 8 6 1.3985 -0.4538 4.9023 9 8 0.6901 0.5281 5.0176 10 6 1.7931 -1.2219 6.0965 11 6 2.5761 -2.3383 6.1374 12 8 2.6917 -2.7260 7.4111 13 6 2.0113 -1.9044 8.2256 14 6 1.9203 -2.0377 9.7239 15 9 2.4392 -0.8868 10.3268 16 9 0.5816 -2.1967 10.0976 17 6 1.4250 -0.9454 7.4928 18 7 1.6525 -2.1327 1.1908 19 6 2.4347 -3.0299 0.5138 20 1 3.3374 -2.6970 0.0233 21 6 2.0678 -4.3675 0.4587 22 7 0.9678 -4.7734 1.0568 23 14 3.1352 -5.5916 -0.4643 24 1 4.4929 -5.6164 0.1369 25 1 2.5285 -6.9440 -0.3741 26 1 3.2324 -5.1872 -1.8899 27 1 -0.3634 0.5139 0.8898 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6766 1.9563 -0.8901 32 1 1.6765 1.9565 0.8898 33 1 3.1300 1.4426 0.0005 34 1 0.3433 -0.0733 2.4081 35 1 1.7894 0.9489 2.5869 36 1 2.3873 -1.6226 3.5906 37 1 3.0268 -2.8253 5.2853 38 1 2.4932 -2.9069 10.0469 39 1 0.8086 -0.1358 7.8547 40 1 0.8418 -2.4318 1.6316 41 1 0.7117 -5.7082 1.0186 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753837050.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:43 Heat of formation + Delta-G solvation = -118.405263 kcal Electronic energy + Delta-G solvation = -26356.137341 eV Core-core repulsion = 22101.739221 eV Total energy + Delta-G solvation = -4254.398120 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.40849 -47.41290 -42.80714 -39.28496 -37.31997 -33.88353 -33.31449 -33.10456 -31.44468 -30.39917 -27.64687 -26.70620 -26.13519 -24.38732 -23.20933 -22.29828 -21.38736 -20.00151 -19.12059 -18.18518 -17.76220 -17.59243 -17.34847 -16.50383 -16.23126 -15.90447 -15.88920 -15.10492 -14.52992 -14.27246 -14.18235 -13.76520 -13.72074 -13.57913 -13.46121 -13.31520 -13.25193 -12.92524 -12.74921 -12.67927 -12.10915 -11.62831 -11.48963 -11.16230 -11.05265 -10.94669 -10.69222 -10.39605 -10.28383 -10.03123 -9.91923 -9.76338 -9.72857 -9.15501 -9.00584 -8.66144 -7.10677 -5.88999 -3.19447 1.13809 1.65832 2.11617 3.31419 3.34803 3.40736 3.41609 3.49089 3.59410 3.88553 4.24712 4.47534 4.51885 4.56664 4.76242 5.21476 5.32446 5.32800 5.37491 5.45530 5.58552 5.63088 5.70987 5.77250 5.92070 5.98110 6.05324 6.13114 6.30082 6.34263 6.40404 6.56373 6.60584 6.67390 6.80304 6.96250 7.01481 7.58820 7.82714 8.28229 8.45731 9.40463 9.94695 10.30762 11.32414 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.012450 B = 0.003484 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.514958 B = 8035.659011 C = 9724.922061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C -0.148 4.148 4 C 0.170 3.830 5 H 0.054 0.946 6 C 0.111 3.889 7 N -0.706 5.706 8 C 0.582 3.418 9 O -0.547 6.547 10 C -0.234 4.234 11 C 0.057 3.943 12 O -0.158 6.158 13 C -0.118 4.118 14 C 0.364 3.636 15 F -0.186 7.186 16 F -0.185 7.185 17 C -0.095 4.095 18 N -0.721 5.721 19 C -0.245 4.245 20 H 0.070 0.930 21 C -0.007 4.007 22 N -0.929 5.929 23 Si 0.905 3.095 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.286 1.286 27 H 0.047 0.953 28 H 0.040 0.960 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.407 0.593 37 H 0.226 0.774 38 H 0.133 0.867 39 H 0.165 0.835 40 H 0.386 0.614 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.918 6.354 12.313 14.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.133 4.133 3 C -0.206 4.206 4 C 0.059 3.941 5 H 0.072 0.928 6 C -0.013 4.013 7 N -0.357 5.357 8 C 0.369 3.631 9 O -0.427 6.427 10 C -0.238 4.238 11 C -0.014 4.014 12 O -0.054 6.054 13 C -0.167 4.167 14 C 0.310 3.690 15 F -0.167 7.167 16 F -0.166 7.166 17 C -0.115 4.115 18 N -0.362 5.362 19 C -0.376 4.376 20 H 0.088 0.912 21 C -0.204 4.204 22 N -0.577 5.577 23 Si 0.736 3.264 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.213 1.213 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.243 0.757 37 H 0.242 0.758 38 H 0.150 0.850 39 H 0.183 0.817 40 H 0.220 0.780 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.669 6.716 12.434 14.601 hybrid contribution 0.327 -1.043 -0.737 1.318 sum 3.997 5.673 11.697 13.601 Atomic orbital electron populations 1.21800 0.95798 1.02363 1.00005 1.21731 0.96065 0.94623 1.00881 1.21918 1.00530 0.97170 1.01017 1.20524 0.97156 0.85922 0.90450 0.92830 1.21874 1.00684 0.94641 0.84113 1.45831 1.52463 1.31875 1.05570 1.17140 0.80078 0.83746 0.82132 1.90764 1.38080 1.27331 1.86477 1.21618 1.07007 1.00400 0.94792 1.24859 0.97448 0.94762 0.84360 1.83674 1.57866 1.47227 1.16597 1.22300 1.04930 0.96248 0.93240 1.18996 0.78703 0.87700 0.83585 1.93069 1.86385 1.53491 1.83744 1.93075 1.36101 1.95759 1.91638 1.22634 0.99224 0.98882 0.90720 1.42461 1.28886 1.01169 1.63709 1.19165 1.03671 0.88484 1.26259 0.91171 1.24723 0.97645 0.97160 1.00887 1.69651 1.24417 1.15821 1.47764 0.86320 0.79566 0.80771 0.79776 1.21278 1.21758 1.21296 0.93383 0.94120 0.91599 0.90731 0.93484 0.93000 0.93190 0.91038 0.91494 0.75662 0.75772 0.84999 0.81719 0.78024 0.93358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.60 37.16 0.32 -2.00 16 2 C -0.11 -1.82 2.88 -90.62 -0.26 -2.08 16 3 C -0.15 -2.00 8.95 37.16 0.33 -1.67 16 4 C 0.17 2.98 2.22 -67.92 -0.15 2.83 16 5 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 6 C 0.11 1.81 4.53 -4.04 -0.02 1.80 16 7 N -0.71 -11.28 5.38 -61.40 -0.33 -11.61 16 8 C 0.58 9.81 7.81 -12.54 -0.10 9.71 16 9 O -0.55 -10.88 16.98 5.26 0.09 -10.79 16 10 C -0.23 -3.35 6.31 -103.27 -0.65 -4.01 16 11 C 0.06 0.67 11.61 30.08 0.35 1.02 16 12 O -0.16 -1.82 10.52 7.66 0.08 -1.74 16 13 C -0.12 -1.36 6.72 -35.74 -0.24 -1.60 16 14 C 0.36 3.20 5.75 36.01 0.21 3.41 16 15 F -0.19 -1.85 17.32 2.25 0.04 -1.81 16 16 F -0.18 -1.92 17.32 2.25 0.04 -1.88 16 17 C -0.09 -1.26 10.90 -37.45 -0.41 -1.67 16 18 N -0.72 -15.66 4.01 -53.42 -0.21 -15.88 16 19 C -0.24 -6.03 9.93 -15.06 -0.15 -6.18 16 20 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 21 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 22 N -0.93 -25.84 13.06 55.49 0.72 -25.12 16 23 Si 0.90 20.84 29.55 -169.99 -5.02 15.82 16 24 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 27 H 0.05 0.74 6.23 -51.93 -0.32 0.42 16 28 H 0.04 0.60 8.14 -51.92 -0.42 0.17 16 29 H 0.06 1.25 7.75 -51.93 -0.40 0.85 16 30 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.05 0.67 6.68 -51.93 -0.35 0.32 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 1.26 6.06 -51.93 -0.31 0.95 16 35 H 0.07 1.04 6.81 -51.93 -0.35 0.69 16 36 H 0.41 6.24 7.11 -40.82 -0.29 5.95 16 37 H 0.23 2.11 7.47 -52.49 -0.39 1.71 16 38 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.17 2.11 8.06 -52.49 -0.42 1.69 16 40 H 0.39 9.21 7.80 -40.82 -0.32 8.89 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 356.08 15.07 5.37 5.37 Total: -1.00 -30.08 356.08 -5.34 -35.42 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -5.24 Total: 12.96 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -0.86 Total: -0.74 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: 0.18 Total: -52.61 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.17 Total: -12.53 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.08 Total: -3.69 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.08 -5.34 -35.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753837050.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.985 kcal (2) G-P(sol) polarization free energy of solvation -30.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds