Wall clock time and date at job start Tue Mar 31 2020 11:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46884 * 2 1 4 4 C 1.53004 * 109.47075 * 119.99154 * 2 1 3 5 5 H 1.08994 * 109.46911 * 185.00479 * 4 2 1 6 6 C 1.53002 * 109.47276 * 305.00657 * 4 2 1 7 7 N 1.46492 * 109.46986 * 175.00016 * 6 4 2 8 8 C 1.34778 * 120.00096 * 180.02562 * 7 6 4 9 9 O 1.21618 * 119.99776 * 359.97438 * 8 7 6 10 10 C 1.47374 * 120.00311 * 179.97438 * 8 7 6 11 11 C 1.36422 * 127.19332 * 359.95169 * 10 8 7 12 12 O 1.33648 * 108.39435 * 180.02562 * 11 10 8 13 13 C 1.34214 * 110.91297 * 359.97438 * 12 11 10 14 14 C 1.50699 * 125.43794 * 180.02562 * 13 12 11 15 15 F 1.39901 * 109.46906 * 119.97454 * 14 13 12 16 16 F 1.39893 * 109.47561 * 239.97835 * 14 13 12 17 17 C 1.34177 * 109.12495 * 0.02562 * 13 12 11 18 18 N 1.46505 * 109.46858 * 65.00482 * 4 2 1 19 19 C 1.36932 * 119.99769 * 84.99826 * 18 4 2 20 20 H 1.07999 * 120.00432 * 0.02562 * 19 18 4 21 21 C 1.38814 * 119.99961 * 179.97438 * 19 18 4 22 22 N 1.31621 * 119.99855 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46994 * 59.99828 * 23 21 19 25 25 H 1.48499 * 109.47025 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46836 * 300.00032 * 23 21 19 27 27 H 1.08993 * 109.47728 * 300.00552 * 1 2 3 28 28 H 1.09007 * 109.47205 * 60.00848 * 1 2 3 29 29 H 1.08999 * 109.47060 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47508 * 239.99930 * 2 1 3 31 31 H 1.09007 * 109.46507 * 299.99579 * 3 2 1 32 32 H 1.08993 * 109.47388 * 59.99240 * 3 2 1 33 33 H 1.09002 * 109.47139 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47021 * 54.99248 * 6 4 2 35 35 H 1.08997 * 109.46655 * 295.00129 * 6 4 2 36 36 H 0.97006 * 120.00481 * 359.97438 * 7 6 4 37 37 H 1.07992 * 125.79735 * 0.08366 * 11 10 8 38 38 H 1.09003 * 109.47270 * 359.97438 * 14 13 12 39 39 H 1.07999 * 127.02292 * 179.97438 * 17 13 12 40 40 H 0.96994 * 119.99588 * 264.99975 * 18 4 2 41 41 H 0.97000 * 119.99929 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 3.1262 -0.6441 1.2953 6 6 1.4298 -0.0760 2.4954 7 7 1.8226 -0.8393 3.6825 8 6 1.3985 -0.4538 4.9023 9 8 0.6901 0.5281 5.0176 10 6 1.7931 -1.2219 6.0965 11 6 2.5761 -2.3383 6.1374 12 8 2.6917 -2.7260 7.4111 13 6 2.0113 -1.9044 8.2256 14 6 1.9203 -2.0377 9.7239 15 9 2.4392 -0.8868 10.3268 16 9 0.5816 -2.1967 10.0976 17 6 1.4250 -0.9454 7.4928 18 7 1.6525 -2.1327 1.1908 19 6 2.4347 -3.0299 0.5138 20 1 3.3374 -2.6970 0.0233 21 6 2.0678 -4.3675 0.4587 22 7 0.9678 -4.7734 1.0568 23 14 3.1352 -5.5916 -0.4643 24 1 4.4929 -5.6164 0.1369 25 1 2.5285 -6.9440 -0.3741 26 1 3.2324 -5.1872 -1.8899 27 1 -0.3634 0.5139 0.8898 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6766 1.9563 -0.8901 32 1 1.6765 1.9565 0.8898 33 1 3.1300 1.4426 0.0005 34 1 0.3433 -0.0733 2.4081 35 1 1.7894 0.9489 2.5869 36 1 2.3873 -1.6226 3.5906 37 1 3.0268 -2.8253 5.2853 38 1 2.4932 -2.9069 10.0469 39 1 0.8086 -0.1358 7.8547 40 1 0.8418 -2.4318 1.6316 41 1 0.7117 -5.7082 1.0186 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753837050.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:42 Heat of formation + Delta-G solvation = -137.364031 kcal Electronic energy + Delta-G solvation = -26356.959455 eV Core-core repulsion = 22101.739221 eV Total energy + Delta-G solvation = -4255.220234 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.15508 -48.16928 -43.78299 -40.64374 -38.76910 -35.27218 -35.06075 -34.12726 -32.47830 -32.05692 -29.06507 -27.95096 -27.03803 -25.92021 -24.67796 -23.66052 -22.37803 -21.15847 -20.30887 -19.45502 -19.13838 -18.53796 -18.30317 -17.58953 -17.22165 -17.18441 -17.01604 -16.64811 -16.09288 -15.50902 -15.31790 -15.03405 -14.96301 -14.89083 -14.52675 -14.47132 -14.25616 -14.04171 -13.99920 -13.82733 -13.63271 -12.83337 -12.78275 -12.66791 -12.48059 -12.37040 -12.20498 -12.12938 -11.84556 -11.50422 -11.30263 -11.14431 -11.09933 -10.82663 -10.20432 -9.95370 -8.95774 -7.87651 -5.15908 0.14088 0.59939 1.23280 1.52478 1.54494 1.59551 2.10056 2.24111 2.60541 2.87195 3.04272 3.42881 3.46738 3.61972 3.81089 3.84657 3.88002 3.92180 4.17700 4.24774 4.35055 4.37611 4.44974 4.53708 4.69168 4.74563 4.88443 4.94171 4.96190 5.10952 5.16391 5.23273 5.31081 5.45070 5.57398 5.61217 5.62966 5.68702 6.32314 6.52200 7.14523 7.40864 8.12450 8.37984 9.34357 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.012450 B = 0.003484 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.514958 B = 8035.659011 C = 9724.922061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 C -0.141 4.141 4 C 0.173 3.827 5 H 0.060 0.940 6 C 0.119 3.881 7 N -0.702 5.702 8 C 0.582 3.418 9 O -0.585 6.585 10 C -0.264 4.264 11 C 0.077 3.923 12 O -0.150 6.150 13 C -0.108 4.108 14 C 0.366 3.634 15 F -0.192 7.192 16 F -0.194 7.194 17 C -0.120 4.120 18 N -0.725 5.725 19 C -0.231 4.231 20 H 0.077 0.923 21 C -0.064 4.064 22 N -0.964 5.964 23 Si 0.961 3.039 24 H -0.275 1.275 25 H -0.304 1.304 26 H -0.287 1.287 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.032 0.968 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.411 0.589 37 H 0.250 0.750 38 H 0.180 0.820 39 H 0.161 0.839 40 H 0.373 0.627 41 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.580 6.590 12.690 15.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 C -0.199 4.199 4 C 0.064 3.936 5 H 0.078 0.922 6 C -0.005 4.005 7 N -0.352 5.352 8 C 0.371 3.629 9 O -0.467 6.467 10 C -0.269 4.269 11 C 0.006 3.994 12 O -0.045 6.045 13 C -0.157 4.157 14 C 0.312 3.688 15 F -0.173 7.173 16 F -0.175 7.175 17 C -0.140 4.140 18 N -0.365 5.365 19 C -0.363 4.363 20 H 0.095 0.905 21 C -0.257 4.257 22 N -0.615 5.615 23 Si 0.792 3.208 24 H -0.201 1.201 25 H -0.231 1.231 26 H -0.214 1.214 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.248 0.752 37 H 0.265 0.735 38 H 0.197 0.803 39 H 0.179 0.821 40 H 0.206 0.794 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.375 6.987 12.803 15.544 hybrid contribution -0.181 -1.038 -0.859 1.359 sum 5.194 5.949 11.945 14.319 Atomic orbital electron populations 1.21736 0.95879 1.00548 1.01246 1.21622 0.95941 0.96396 0.98948 1.21840 1.01131 0.94774 1.02114 1.20660 0.97463 0.83918 0.91587 0.92214 1.21761 0.99777 0.95272 0.83711 1.45779 1.52245 1.31836 1.05370 1.17455 0.79295 0.83362 0.82799 1.90732 1.39872 1.29080 1.87026 1.21508 1.09241 1.01818 0.94314 1.25233 0.95731 0.93426 0.85027 1.83711 1.57462 1.46880 1.16407 1.22770 1.03391 0.95061 0.94509 1.19475 0.78677 0.88858 0.81746 1.93057 1.86397 1.54304 1.83591 1.93057 1.37188 1.95800 1.91502 1.22740 1.00497 0.99988 0.90819 1.42539 1.28071 1.02687 1.63252 1.19486 1.03422 0.88784 1.24615 0.90526 1.25336 0.98899 0.98863 1.02567 1.69799 1.26295 1.15380 1.50014 0.85401 0.78541 0.78262 0.78606 1.20112 1.23053 1.21371 0.92614 0.92422 0.94876 0.92760 0.92087 0.92239 0.92204 0.92417 0.90062 0.75208 0.73465 0.80290 0.82146 0.79440 0.94314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.38 8.60 71.98 0.62 -3.76 16 2 C -0.11 -3.38 2.88 -10.79 -0.03 -3.41 16 3 C -0.14 -3.42 8.95 71.98 0.64 -2.78 16 4 C 0.17 5.87 2.22 44.99 0.10 5.97 16 5 H 0.06 1.99 8.08 -2.39 -0.02 1.98 16 6 C 0.12 3.81 4.53 86.38 0.39 4.20 16 7 N -0.70 -22.12 5.38 -466.43 -2.51 -24.63 16 8 C 0.58 19.69 7.81 86.65 0.68 20.37 16 9 O -0.58 -23.67 16.98 -4.09 -0.07 -23.74 16 10 C -0.26 -7.50 6.31 -18.99 -0.12 -7.62 16 11 C 0.08 1.71 11.61 67.40 0.78 2.49 16 12 O -0.15 -3.12 10.52 4.51 0.05 -3.08 16 13 C -0.11 -2.31 6.72 24.76 0.17 -2.14 16 14 C 0.37 5.60 5.75 71.24 0.41 6.01 16 15 F -0.19 -3.50 17.32 44.97 0.78 -2.72 16 16 F -0.19 -3.74 17.32 44.97 0.78 -2.96 16 17 C -0.12 -3.20 10.90 23.65 0.26 -2.94 16 18 N -0.73 -31.42 4.01 -322.93 -1.30 -32.72 16 19 C -0.23 -11.26 9.93 84.03 0.83 -10.42 16 20 H 0.08 3.59 7.83 -2.91 -0.02 3.57 16 21 C -0.06 -3.32 5.50 84.86 0.47 -2.85 16 22 N -0.96 -54.39 13.06 21.65 0.28 -54.11 16 23 Si 0.96 42.73 29.55 68.60 2.03 44.76 16 24 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 26 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 27 H 0.05 1.68 6.23 -2.39 -0.01 1.67 16 28 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.03 1.26 7.75 -2.39 -0.02 1.24 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.06 1.33 8.14 -2.38 -0.02 1.32 16 32 H 0.06 1.37 6.68 -2.39 -0.02 1.35 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.06 2.03 6.06 -2.39 -0.01 2.02 16 35 H 0.08 2.40 6.81 -2.39 -0.02 2.38 16 36 H 0.41 12.27 7.11 -92.70 -0.66 11.62 16 37 H 0.25 4.12 7.47 -2.91 -0.02 4.10 16 38 H 0.18 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.16 4.25 8.06 -2.91 -0.02 4.23 16 40 H 0.37 18.09 7.80 -92.71 -0.72 17.37 16 41 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -65.22 356.08 4.94 -60.28 By element: Atomic # 1 Polarization: 36.10 SS G_CDS: -0.30 Total: 35.80 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 5.20 Total: 3.11 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -3.52 Total: -111.46 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.02 Total: -26.81 kcal Atomic # 9 Polarization: -7.24 SS G_CDS: 1.56 Total: -5.68 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -65.22 4.94 -60.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753837050.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.085 kcal (2) G-P(sol) polarization free energy of solvation -65.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds