Wall clock time and date at job start Tue Mar 31 2020 11:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30637 * 1 3 3 Si 1.86801 * 120.00072 * 2 1 4 4 H 1.48506 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47074 * 299.99711 * 3 2 1 6 6 H 1.48497 * 109.47070 * 60.00154 * 3 2 1 7 7 C 1.40126 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00296 * 179.97438 * 7 2 1 9 9 C 1.46195 * 119.99845 * 0.02562 * 7 2 1 10 10 O 1.21725 * 120.00226 * 359.97438 * 9 7 2 11 11 N 1.34781 * 119.99795 * 179.97438 * 9 7 2 12 12 C 1.39097 * 119.99834 * 185.27487 * 11 9 7 13 13 C 1.39257 * 119.93989 * 33.64104 * 12 11 9 14 14 C 1.37631 * 120.06742 * 179.97438 * 13 12 11 15 15 C 1.39784 * 119.93312 * 359.97438 * 14 13 12 16 16 C 1.47598 * 120.05981 * 179.97438 * 15 14 13 17 17 O 1.21587 * 119.99891 * 359.97438 * 16 15 14 18 18 N 1.34770 * 119.99854 * 179.97438 * 16 15 14 19 19 C 1.46508 * 119.99986 * 179.97438 * 18 16 15 20 20 C 1.52993 * 109.47024 * 275.00493 * 19 18 16 21 21 C 1.53008 * 109.46982 * 180.02562 * 20 19 18 22 22 C 1.52994 * 109.47012 * 60.00134 * 21 20 19 23 23 C 1.53005 * 109.46942 * 299.99936 * 22 21 20 24 24 C 1.52999 * 109.46938 * 60.00672 * 23 22 21 25 25 C 1.39779 * 119.87495 * 0.24765 * 15 14 13 26 26 C 1.37625 * 119.93800 * 359.51848 * 25 15 14 27 27 H 0.96995 * 119.99666 * 0.02562 * 1 2 3 28 28 H 0.97002 * 120.00045 * 5.28052 * 11 9 7 29 29 H 1.08001 * 119.96750 * 359.97402 * 13 12 11 30 30 H 1.07995 * 120.03321 * 179.97438 * 14 13 12 31 31 H 0.97002 * 120.00219 * 0.02562 * 18 16 15 32 32 H 1.08995 * 109.46985 * 35.00676 * 19 18 16 33 33 H 1.09001 * 109.47781 * 300.00028 * 20 19 18 34 34 H 1.09004 * 109.47671 * 60.00333 * 20 19 18 35 35 H 1.09002 * 109.46886 * 299.99788 * 21 20 19 36 36 H 1.08999 * 109.46799 * 179.97438 * 21 20 19 37 37 H 1.09003 * 109.47154 * 180.02562 * 22 21 20 38 38 H 1.09002 * 109.47578 * 60.00078 * 22 21 20 39 39 H 1.08995 * 109.47351 * 300.00133 * 23 22 21 40 40 H 1.09005 * 109.46766 * 180.02562 * 23 22 21 41 41 H 1.09002 * 109.47018 * 179.97438 * 24 23 22 42 42 H 1.08995 * 109.47539 * 59.99577 * 24 23 22 43 43 H 1.08001 * 120.02757 * 179.74840 * 25 15 14 44 44 H 1.08000 * 119.96701 * 180.20642 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3463 0.0006 5 1 1.8817 2.3964 -1.2125 6 1 1.8817 2.3964 1.2125 7 6 2.0070 -1.2135 0.0005 8 1 3.0870 -1.2136 0.0001 9 6 1.2760 -2.4796 0.0005 10 8 0.0587 -2.4796 0.0005 11 7 1.9499 -3.6468 0.0005 12 6 1.2587 -4.8489 -0.1102 13 6 0.0985 -4.9154 -0.8774 14 6 -0.5871 -6.1035 -0.9892 15 6 -0.1174 -7.2444 -0.3322 16 6 -0.8508 -8.5199 -0.4497 17 8 -1.8647 -8.5788 -1.1181 18 7 -0.3965 -9.6192 0.1839 19 6 -1.1247 -10.8851 0.0677 20 6 -2.2447 -10.9266 1.1092 21 6 -3.0048 -12.2490 0.9883 22 6 -2.0425 -13.4141 1.2275 23 6 -0.9224 -13.3725 0.1860 24 6 -0.1623 -12.0502 0.3070 25 6 1.0449 -7.1736 0.4410 26 6 1.7291 -5.9840 0.5453 27 1 -0.4849 0.8400 -0.0004 28 1 2.9168 -3.6486 0.0779 29 1 -0.2638 -4.0337 -1.3852 30 1 -1.4871 -6.1543 -1.5840 31 1 0.4122 -9.5721 0.7175 32 1 -1.5539 -10.9670 -0.9308 33 1 -1.8155 -10.8447 2.1079 34 1 -2.9301 -10.0963 0.9391 35 1 -3.4340 -12.3313 -0.0103 36 1 -3.8024 -12.2788 1.7306 37 1 -2.5839 -14.3562 1.1409 38 1 -1.6133 -13.3318 2.2261 39 1 -1.3516 -13.4549 -0.8126 40 1 -0.2371 -14.2029 0.3562 41 1 0.6359 -12.0208 -0.4347 42 1 0.2668 -11.9679 1.3055 43 1 1.4078 -8.0525 0.9530 44 1 2.6290 -5.9296 1.1399 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016493598.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:02 Heat of formation + Delta-G solvation = -74.001272 kcal Electronic energy + Delta-G solvation = -25249.115631 eV Core-core repulsion = 21550.872542 eV Total energy + Delta-G solvation = -3698.243088 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.21950 -39.13961 -38.05296 -36.70562 -34.25017 -33.56971 -32.55584 -31.04813 -30.64518 -30.03644 -28.62942 -26.42652 -23.63611 -22.91968 -22.60713 -21.80042 -20.62329 -20.17036 -19.60955 -17.81351 -17.55530 -16.38561 -16.29219 -15.56275 -15.38513 -14.92363 -14.66523 -14.42389 -14.32077 -14.11434 -13.95398 -13.55063 -13.14704 -13.08816 -12.77710 -12.74872 -12.63282 -12.47413 -11.98525 -11.84309 -11.50580 -11.43899 -11.33662 -11.17152 -10.96134 -10.78788 -10.72723 -10.66516 -10.48373 -10.37094 -9.67598 -9.44882 -9.05204 -8.96890 -8.58600 -7.86653 -7.23802 -6.43144 -4.91105 1.34148 1.87997 3.00967 3.10024 3.14393 3.19032 3.21886 3.92139 4.20399 4.38771 4.44691 4.46290 4.51545 4.62701 4.85703 4.96575 5.02383 5.15377 5.16756 5.21071 5.26810 5.33518 5.34281 5.48234 5.54094 5.72264 5.77228 5.81308 5.82077 5.83306 5.94637 5.97372 6.09923 6.13885 6.15954 6.42293 6.51103 6.59593 6.88395 6.94425 7.19766 7.25711 7.60203 7.62011 7.91856 8.05191 8.40228 8.76573 9.07534 10.27337 10.47299 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.042311 B = 0.002150 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.615424 B =13022.024669 C =13325.428751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.085 3.915 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.074 0.926 9 C 0.539 3.461 10 O -0.555 6.555 11 N -0.696 5.696 12 C 0.226 3.774 13 C -0.142 4.142 14 C -0.034 4.034 15 C -0.196 4.196 16 C 0.569 3.431 17 O -0.547 6.547 18 N -0.731 5.731 19 C 0.147 3.853 20 C -0.131 4.131 21 C -0.117 4.117 22 C -0.121 4.121 23 C -0.115 4.115 24 C -0.127 4.127 25 C -0.061 4.061 26 C -0.189 4.189 27 H 0.273 0.727 28 H 0.396 0.604 29 H 0.144 0.856 30 H 0.129 0.871 31 H 0.397 0.603 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.116 0.884 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.502 -22.213 2.439 22.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.137 4.137 3 Si 0.738 3.262 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.572 4.572 8 H 0.092 0.908 9 C 0.346 3.654 10 O -0.436 6.436 11 N -0.338 5.338 12 C 0.125 3.875 13 C -0.163 4.163 14 C -0.054 4.054 15 C -0.201 4.201 16 C 0.359 3.641 17 O -0.426 6.426 18 N -0.383 5.383 19 C 0.042 3.958 20 C -0.169 4.169 21 C -0.155 4.155 22 C -0.159 4.159 23 C -0.153 4.153 24 C -0.165 4.165 25 C -0.080 4.080 26 C -0.211 4.211 27 H 0.084 0.916 28 H 0.229 0.771 29 H 0.162 0.838 30 H 0.147 0.853 31 H 0.233 0.767 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.134 0.866 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.747 -21.997 1.948 22.095 hybrid contribution 1.376 0.874 0.488 1.701 sum 2.123 -21.123 2.435 21.368 Atomic orbital electron populations 1.69985 1.07192 1.27916 1.33307 1.25769 0.94741 1.00643 0.92515 0.86200 0.80417 0.81097 0.78456 1.18596 1.19912 1.19950 1.20902 0.93900 0.88874 1.53502 0.90805 1.18465 0.87551 0.82059 0.77359 1.90660 1.13615 1.85897 1.53478 1.44261 1.09943 1.04539 1.75031 1.18212 0.92541 0.86427 0.90360 1.21337 0.96591 0.98327 1.00077 1.21061 0.98035 0.90666 0.95607 1.19550 0.99280 0.93874 1.07373 1.18346 0.84027 0.83555 0.78157 1.90732 1.25325 1.85395 1.41145 1.45991 1.29812 1.09572 1.52937 1.20923 0.92150 0.82367 1.00333 1.21942 0.97858 0.98036 0.99113 1.21498 0.97839 0.94050 1.02127 1.21577 0.96766 0.98365 0.99187 1.21476 0.97519 0.96567 0.99782 1.21812 0.98089 0.94184 1.02390 1.20804 0.93682 0.96966 0.96578 1.20780 1.03354 0.93059 1.03902 0.91615 0.77058 0.83787 0.85324 0.76743 0.89509 0.91875 0.91220 0.91737 0.91801 0.91963 0.91938 0.91661 0.91620 0.91277 0.91430 0.86599 0.85921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.53 11.82 55.55 0.66 -20.87 16 2 C 0.08 2.24 5.50 -17.35 -0.10 2.14 16 3 Si 0.91 19.03 29.56 -169.99 -5.02 14.00 16 4 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.54 -14.17 9.54 -35.68 -0.34 -14.51 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 9 C 0.54 14.43 7.46 -13.06 -0.10 14.33 16 10 O -0.56 -16.91 12.69 5.17 0.07 -16.84 16 11 N -0.70 -14.86 5.30 -11.18 -0.06 -14.92 16 12 C 0.23 4.51 6.27 -83.81 -0.53 3.98 16 13 C -0.14 -3.00 8.62 -39.42 -0.34 -3.34 16 14 C -0.03 -0.64 9.58 -39.23 -0.38 -1.01 16 15 C -0.20 -3.23 5.88 -104.92 -0.62 -3.84 16 16 C 0.57 8.93 7.73 -12.44 -0.10 8.84 16 17 O -0.55 -10.37 16.00 5.29 0.08 -10.29 16 18 N -0.73 -8.39 5.03 -54.83 -0.28 -8.67 16 19 C 0.15 1.49 2.46 -67.93 -0.17 1.32 16 20 C -0.13 -1.30 5.49 -26.73 -0.15 -1.45 16 21 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 22 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 23 C -0.12 -0.74 5.92 -26.73 -0.16 -0.90 16 24 C -0.13 -0.92 5.39 -26.73 -0.14 -1.07 16 25 C -0.06 -0.86 9.53 -39.23 -0.37 -1.24 16 26 C -0.19 -3.01 9.94 -39.43 -0.39 -3.40 16 27 H 0.27 7.02 8.29 -40.82 -0.34 6.68 16 28 H 0.40 7.07 8.79 -40.82 -0.36 6.71 16 29 H 0.14 3.46 6.41 -52.49 -0.34 3.12 16 30 H 0.13 2.38 7.64 -52.49 -0.40 1.98 16 31 H 0.40 3.57 6.62 -40.82 -0.27 3.30 16 32 H 0.09 1.05 7.58 -51.93 -0.39 0.66 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.12 1.17 6.39 -52.49 -0.34 0.83 16 44 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 361.94 15.07 5.45 5.45 Total: -1.00 -33.47 361.94 -9.58 -43.04 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -6.29 Total: 11.27 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -4.19 Total: -2.19 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.32 Total: -44.46 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: 0.15 Total: -27.13 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.47 -9.58 -43.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016493598.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.959 kcal (2) G-P(sol) polarization free energy of solvation -33.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds