Wall clock time and date at job start Tue Mar 31 2020 11:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30637 * 1 3 3 Si 1.86801 * 120.00072 * 2 1 4 4 H 1.48506 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47074 * 299.99711 * 3 2 1 6 6 H 1.48497 * 109.47070 * 60.00154 * 3 2 1 7 7 C 1.40126 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00296 * 179.97438 * 7 2 1 9 9 C 1.46195 * 119.99845 * 0.02562 * 7 2 1 10 10 O 1.21725 * 120.00226 * 359.97438 * 9 7 2 11 11 N 1.34781 * 119.99795 * 179.97438 * 9 7 2 12 12 C 1.39097 * 119.99834 * 185.27487 * 11 9 7 13 13 C 1.39257 * 119.93989 * 33.64104 * 12 11 9 14 14 C 1.37631 * 120.06742 * 179.97438 * 13 12 11 15 15 C 1.39784 * 119.93312 * 359.97438 * 14 13 12 16 16 C 1.47598 * 120.05981 * 179.97438 * 15 14 13 17 17 O 1.21587 * 119.99891 * 359.97438 * 16 15 14 18 18 N 1.34770 * 119.99854 * 179.97438 * 16 15 14 19 19 C 1.46508 * 119.99986 * 179.97438 * 18 16 15 20 20 C 1.52993 * 109.47024 * 275.00493 * 19 18 16 21 21 C 1.53008 * 109.46982 * 180.02562 * 20 19 18 22 22 C 1.52994 * 109.47012 * 60.00134 * 21 20 19 23 23 C 1.53005 * 109.46942 * 299.99936 * 22 21 20 24 24 C 1.52999 * 109.46938 * 60.00672 * 23 22 21 25 25 C 1.39779 * 119.87495 * 0.24765 * 15 14 13 26 26 C 1.37625 * 119.93800 * 359.51848 * 25 15 14 27 27 H 0.96995 * 119.99666 * 0.02562 * 1 2 3 28 28 H 0.97002 * 120.00045 * 5.28052 * 11 9 7 29 29 H 1.08001 * 119.96750 * 359.97402 * 13 12 11 30 30 H 1.07995 * 120.03321 * 179.97438 * 14 13 12 31 31 H 0.97002 * 120.00219 * 0.02562 * 18 16 15 32 32 H 1.08995 * 109.46985 * 35.00676 * 19 18 16 33 33 H 1.09001 * 109.47781 * 300.00028 * 20 19 18 34 34 H 1.09004 * 109.47671 * 60.00333 * 20 19 18 35 35 H 1.09002 * 109.46886 * 299.99788 * 21 20 19 36 36 H 1.08999 * 109.46799 * 179.97438 * 21 20 19 37 37 H 1.09003 * 109.47154 * 180.02562 * 22 21 20 38 38 H 1.09002 * 109.47578 * 60.00078 * 22 21 20 39 39 H 1.08995 * 109.47351 * 300.00133 * 23 22 21 40 40 H 1.09005 * 109.46766 * 180.02562 * 23 22 21 41 41 H 1.09002 * 109.47018 * 179.97438 * 24 23 22 42 42 H 1.08995 * 109.47539 * 59.99577 * 24 23 22 43 43 H 1.08001 * 120.02757 * 179.74840 * 25 15 14 44 44 H 1.08000 * 119.96701 * 180.20642 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3463 0.0006 5 1 1.8817 2.3964 -1.2125 6 1 1.8817 2.3964 1.2125 7 6 2.0070 -1.2135 0.0005 8 1 3.0870 -1.2136 0.0001 9 6 1.2760 -2.4796 0.0005 10 8 0.0587 -2.4796 0.0005 11 7 1.9499 -3.6468 0.0005 12 6 1.2587 -4.8489 -0.1102 13 6 0.0985 -4.9154 -0.8774 14 6 -0.5871 -6.1035 -0.9892 15 6 -0.1174 -7.2444 -0.3322 16 6 -0.8508 -8.5199 -0.4497 17 8 -1.8647 -8.5788 -1.1181 18 7 -0.3965 -9.6192 0.1839 19 6 -1.1247 -10.8851 0.0677 20 6 -2.2447 -10.9266 1.1092 21 6 -3.0048 -12.2490 0.9883 22 6 -2.0425 -13.4141 1.2275 23 6 -0.9224 -13.3725 0.1860 24 6 -0.1623 -12.0502 0.3070 25 6 1.0449 -7.1736 0.4410 26 6 1.7291 -5.9840 0.5453 27 1 -0.4849 0.8400 -0.0004 28 1 2.9168 -3.6486 0.0779 29 1 -0.2638 -4.0337 -1.3852 30 1 -1.4871 -6.1543 -1.5840 31 1 0.4122 -9.5721 0.7175 32 1 -1.5539 -10.9670 -0.9308 33 1 -1.8155 -10.8447 2.1079 34 1 -2.9301 -10.0963 0.9391 35 1 -3.4340 -12.3313 -0.0103 36 1 -3.8024 -12.2788 1.7306 37 1 -2.5839 -14.3562 1.1409 38 1 -1.6133 -13.3318 2.2261 39 1 -1.3516 -13.4549 -0.8126 40 1 -0.2371 -14.2029 0.3562 41 1 0.6359 -12.0208 -0.4347 42 1 0.2668 -11.9679 1.3055 43 1 1.4078 -8.0525 0.9530 44 1 2.6290 -5.9296 1.1399 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016493598.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:01 Heat of formation + Delta-G solvation = -96.629413 kcal Electronic energy + Delta-G solvation = -25250.096861 eV Core-core repulsion = 21550.872542 eV Total energy + Delta-G solvation = -3699.224318 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.46141 -40.57343 -39.14974 -38.30798 -35.46319 -35.17314 -34.56827 -31.99480 -31.67357 -31.35384 -29.82518 -28.29638 -24.97003 -23.93249 -23.57980 -22.90862 -22.11122 -21.25915 -20.73784 -19.53830 -18.87824 -17.87872 -17.64756 -17.32219 -16.35606 -16.08633 -16.05404 -15.67311 -15.54633 -15.07914 -14.99744 -14.85927 -14.63971 -14.55775 -14.24039 -13.83358 -13.57111 -13.47804 -13.36753 -13.12858 -13.10177 -12.83275 -12.74646 -12.23154 -12.13892 -12.04965 -11.99817 -11.59911 -11.36953 -11.20915 -11.15034 -10.93086 -10.88682 -10.10811 -10.06232 -9.82849 -8.87022 -8.40203 -6.98160 -0.08524 0.47311 1.38226 1.39762 1.58019 1.83163 2.14868 2.19231 2.38132 2.82945 2.95987 3.53762 3.69751 3.80809 3.84667 3.92820 3.99658 4.06161 4.24313 4.32776 4.41772 4.46357 4.52631 4.57366 4.59035 4.67325 4.72165 4.90817 5.02582 5.09675 5.13467 5.21624 5.22472 5.23753 5.24152 5.34559 5.38677 5.41236 5.43672 5.49630 5.59861 5.70863 5.80094 6.13100 6.28260 6.56505 6.74970 7.23460 7.27509 8.30126 8.53434 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.042311 B = 0.002150 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.615424 B =13022.024669 C =13325.428751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.027 3.973 3 Si 1.002 2.998 4 H -0.242 1.242 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.561 4.561 8 H 0.098 0.902 9 C 0.526 3.474 10 O -0.606 6.606 11 N -0.688 5.688 12 C 0.195 3.805 13 C -0.167 4.167 14 C -0.048 4.048 15 C -0.191 4.191 16 C 0.567 3.433 17 O -0.588 6.588 18 N -0.708 5.708 19 C 0.144 3.856 20 C -0.128 4.128 21 C -0.116 4.116 22 C -0.117 4.117 23 C -0.115 4.115 24 C -0.119 4.119 25 C -0.039 4.039 26 C -0.169 4.169 27 H 0.278 0.722 28 H 0.413 0.587 29 H 0.098 0.902 30 H 0.116 0.884 31 H 0.414 0.586 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.035 0.965 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.174 0.826 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.820 -24.721 4.432 25.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.189 4.189 3 Si 0.821 3.179 4 H -0.165 1.165 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.596 4.596 8 H 0.116 0.884 9 C 0.333 3.667 10 O -0.491 6.491 11 N -0.331 5.331 12 C 0.096 3.904 13 C -0.189 4.189 14 C -0.067 4.067 15 C -0.196 4.196 16 C 0.357 3.643 17 O -0.470 6.470 18 N -0.360 5.360 19 C 0.039 3.961 20 C -0.167 4.167 21 C -0.154 4.154 22 C -0.155 4.155 23 C -0.153 4.153 24 C -0.156 4.156 25 C -0.058 4.058 26 C -0.190 4.190 27 H 0.088 0.912 28 H 0.250 0.750 29 H 0.116 0.884 30 H 0.134 0.866 31 H 0.253 0.747 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.191 0.809 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.133 -24.593 3.963 25.251 hybrid contribution 0.279 1.440 -0.141 1.474 sum 4.412 -23.153 3.822 23.877 Atomic orbital electron populations 1.70157 1.09682 1.29407 1.34989 1.27059 0.95554 1.05210 0.91119 0.84892 0.79509 0.74960 0.78501 1.16494 1.19526 1.19346 1.21465 0.95183 0.89333 1.53655 0.88436 1.18815 0.87186 0.83902 0.76803 1.90625 1.15794 1.87112 1.55579 1.43727 1.10608 1.03864 1.74937 1.18466 0.92691 0.87311 0.91944 1.21026 0.98399 0.97585 1.01846 1.20969 0.97920 0.91220 0.96637 1.19753 0.99971 0.93278 1.06584 1.18275 0.83499 0.84233 0.78304 1.90724 1.27128 1.85981 1.43129 1.45843 1.29937 1.08800 1.51445 1.21073 0.93068 0.82705 0.99206 1.21903 0.97330 0.97897 0.99573 1.21498 0.98314 0.93862 1.01773 1.21563 0.96436 0.97795 0.99692 1.21502 0.97742 0.96671 0.99417 1.21788 0.97368 0.92816 1.03667 1.21327 0.91581 0.98264 0.94636 1.21160 1.04070 0.91526 1.02258 0.91213 0.75045 0.88371 0.86590 0.74728 0.91978 0.90573 0.94657 0.92753 0.91346 0.90928 0.90974 0.92381 0.89699 0.90617 0.89520 0.80895 0.81927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -48.48 11.82 21.85 0.26 -48.22 16 2 C 0.03 1.44 5.50 85.33 0.47 1.91 16 3 Si 1.00 39.13 29.56 68.60 2.03 41.16 16 4 H -0.24 -8.58 7.11 99.48 0.71 -7.87 16 5 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 6 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 7 C -0.56 -30.18 9.54 24.80 0.24 -29.94 16 8 H 0.10 4.58 7.85 -2.91 -0.02 4.56 16 9 C 0.53 29.40 7.46 86.31 0.64 30.04 16 10 O -0.61 -39.46 12.69 -4.43 -0.06 -39.52 16 11 N -0.69 -29.84 5.30 -307.50 -1.63 -31.47 16 12 C 0.20 7.87 6.27 38.48 0.24 8.12 16 13 C -0.17 -7.57 8.62 22.37 0.19 -7.38 16 14 C -0.05 -1.90 9.58 22.50 0.22 -1.69 16 15 C -0.19 -6.13 5.88 -20.06 -0.12 -6.25 16 16 C 0.57 17.40 7.73 86.71 0.67 18.07 16 17 O -0.59 -23.02 16.00 -3.99 -0.06 -23.09 16 18 N -0.71 -14.41 5.03 -445.64 -2.24 -16.65 16 19 C 0.14 2.66 2.46 44.99 0.11 2.77 16 20 C -0.13 -2.40 5.49 30.59 0.17 -2.24 16 21 C -0.12 -1.72 5.92 30.60 0.18 -1.54 16 22 C -0.12 -1.18 5.92 30.59 0.18 -1.00 16 23 C -0.12 -1.11 5.92 30.60 0.18 -0.93 16 24 C -0.12 -1.29 5.39 30.59 0.16 -1.13 16 25 C -0.04 -0.96 9.53 22.50 0.21 -0.74 16 26 C -0.17 -4.85 9.94 22.37 0.22 -4.63 16 27 H 0.28 14.97 8.29 -92.71 -0.77 14.20 16 28 H 0.41 14.43 8.79 -92.71 -0.81 13.61 16 29 H 0.10 5.30 6.41 -2.91 -0.02 5.28 16 30 H 0.12 4.77 7.64 -2.91 -0.02 4.75 16 31 H 0.41 5.44 6.62 -92.71 -0.61 4.82 16 32 H 0.06 1.50 7.58 -2.39 -0.02 1.48 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.07 0.62 8.14 -2.39 -0.02 0.61 16 39 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 41 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.17 2.30 6.39 -2.91 -0.02 2.28 16 44 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -81.06 361.94 1.88 -79.18 By element: Atomic # 1 Polarization: 35.54 SS G_CDS: -0.39 Total: 35.15 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 3.98 Total: 3.46 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -3.61 Total: -96.34 kcal Atomic # 8 Polarization: -62.48 SS G_CDS: -0.12 Total: -62.60 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Total: -81.06 1.88 -79.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016493598.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.451 kcal (2) G-P(sol) polarization free energy of solvation -81.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds