Wall clock time and date at job start Tue Mar 31 2020 11:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47186 * 192.83719 * 3 2 1 5 5 N 1.46496 * 109.47244 * 179.97438 * 4 3 2 6 6 C 1.46504 * 119.99872 * 269.99880 * 5 4 3 7 7 C 1.50701 * 109.47017 * 269.99834 * 6 5 4 8 8 H 1.08006 * 119.99862 * 0.02562 * 7 6 5 9 9 C 1.37871 * 119.99877 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00404 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99774 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47299 * 90.00182 * 11 9 7 13 13 H 1.48506 * 109.46790 * 209.99810 * 11 9 7 14 14 H 1.48496 * 109.47425 * 329.99742 * 11 9 7 15 15 C 1.34772 * 119.99937 * 89.99653 * 5 4 3 16 16 O 1.21283 * 119.99762 * 179.97438 * 15 5 4 17 17 C 1.50699 * 120.00459 * 0.02562 * 15 5 4 18 18 O 1.42893 * 109.47627 * 179.97438 * 17 15 5 19 19 C 1.42896 * 114.00368 * 180.02562 * 18 17 15 20 20 C 1.52995 * 109.47376 * 180.02562 * 19 18 17 21 21 C 1.50707 * 109.47301 * 179.97438 * 20 19 18 22 22 C 1.38238 * 119.99792 * 90.00016 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97953 * 21 20 19 27 27 H 1.08995 * 109.47476 * 72.83545 * 3 2 1 28 28 H 1.09005 * 109.47080 * 312.83597 * 3 2 1 29 29 H 1.08995 * 109.47055 * 59.99568 * 4 3 2 30 30 H 1.09000 * 109.46575 * 299.99765 * 4 3 2 31 31 H 1.08998 * 109.47001 * 30.00061 * 6 5 4 32 32 H 1.09003 * 109.46879 * 150.00491 * 6 5 4 33 33 H 0.96996 * 120.00260 * 180.02562 * 10 9 7 34 34 H 1.09006 * 109.46845 * 59.99606 * 17 15 5 35 35 H 1.08998 * 109.46993 * 300.00606 * 17 15 5 36 36 H 1.08995 * 109.47430 * 59.99865 * 19 18 17 37 37 H 1.09004 * 109.46934 * 300.00059 * 19 18 17 38 38 H 1.09005 * 109.47610 * 60.00060 * 20 19 18 39 39 H 1.09000 * 109.47256 * 299.99402 * 20 19 18 40 40 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 41 41 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 44 44 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.4073 0.3205 5 7 4.5823 1.4079 0.3211 6 6 5.3144 1.1265 1.5585 7 6 5.5648 2.4153 2.2982 8 1 5.2134 3.3505 1.8878 9 6 6.2425 2.4007 3.4988 10 7 6.6709 1.2620 3.9983 11 14 6.5523 3.9983 4.4160 12 1 5.4220 4.2648 5.3415 13 1 7.8127 3.8863 5.1933 14 1 6.6685 5.1135 3.4425 15 6 5.2565 1.6672 -0.8167 16 8 6.4694 1.6681 -0.8160 17 6 4.5036 1.9572 -2.0894 18 8 5.4324 2.1991 -3.1480 19 6 4.8184 2.4864 -4.4059 20 6 5.9017 2.7265 -5.4592 21 6 5.2540 3.0288 -6.7860 22 6 4.9570 4.3348 -7.1285 23 6 4.3634 4.6122 -8.3457 24 6 4.0674 3.5837 -9.2207 25 6 4.3596 2.2773 -8.8760 26 6 4.9574 2.0004 -7.6607 27 1 2.9715 -0.3024 -0.9818 28 1 2.9716 -0.6979 0.7536 29 1 2.7538 1.7104 1.3023 30 1 2.7537 2.1058 -0.4331 31 1 4.7253 0.4566 2.1848 32 1 6.2671 0.6548 1.3177 33 1 7.1473 1.2516 4.8431 34 1 3.8768 2.8378 -1.9481 35 1 3.8769 1.1024 -2.3436 36 1 4.1982 3.3778 -4.3123 37 1 4.1984 1.6425 -4.7086 38 1 6.5216 1.8348 -5.5528 39 1 6.5220 3.5702 -5.1568 40 1 5.1887 5.1383 -6.4450 41 1 4.1310 5.6324 -8.6131 42 1 3.6041 3.8006 -10.1719 43 1 4.1243 1.4734 -9.5577 44 1 5.1901 0.9802 -7.3935 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058827751.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:07 Heat of formation + Delta-G solvation = -34.521961 kcal Electronic energy + Delta-G solvation = -24834.966972 eV Core-core repulsion = 21138.435835 eV Total energy + Delta-G solvation = -3696.531137 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.67256 -39.35515 -37.55337 -36.82144 -35.22517 -33.65004 -32.89320 -31.16585 -30.87534 -29.52520 -28.12663 -26.27045 -24.04926 -23.64556 -22.84861 -22.61298 -21.15263 -18.70732 -17.68554 -17.20460 -16.91149 -16.51787 -16.31057 -16.13895 -15.52122 -15.31243 -15.13610 -14.72278 -14.41640 -14.29930 -13.81564 -13.72029 -13.56727 -13.20175 -13.11300 -12.81365 -12.64784 -12.46932 -12.23321 -12.08557 -11.81090 -11.54393 -11.39224 -11.29659 -11.26816 -11.13681 -11.00550 -10.88365 -10.62951 -10.19543 -9.72784 -9.65232 -9.19880 -9.03663 -8.93898 -8.47775 -7.88226 -6.09313 -4.13950 1.04824 1.12023 2.69012 2.77892 3.14653 3.26832 3.28718 3.36070 3.40808 3.52300 3.86806 4.27996 4.42337 4.56696 4.66133 4.76275 4.86995 4.90429 4.91285 4.95630 5.06924 5.18383 5.22706 5.24275 5.25917 5.26411 5.28332 5.30875 5.48482 5.63811 5.67445 5.78654 5.82177 5.92072 6.03010 6.18460 6.23296 6.38201 6.72647 6.82775 7.13356 7.33668 7.41967 7.54040 7.86855 8.15823 8.21133 8.82724 8.96727 9.51620 10.98862 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012462 B = 0.002632 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.225823 B =10634.073318 C =12118.464943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.217 3.783 3 C -0.052 4.052 4 C 0.116 3.884 5 N -0.597 5.597 6 C 0.246 3.754 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.062 3.938 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.508 3.492 16 O -0.510 6.510 17 C 0.043 3.957 18 O -0.361 6.361 19 C 0.067 3.933 20 C -0.081 4.081 21 C -0.079 4.079 22 C -0.115 4.115 23 C -0.120 4.120 24 C -0.126 4.126 25 C -0.120 4.120 26 C -0.115 4.115 27 H 0.106 0.894 28 H 0.119 0.881 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.037 0.963 32 H 0.047 0.953 33 H 0.264 0.736 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.041 1.297 -22.096 23.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.101 4.101 3 C -0.093 4.093 4 C -0.011 4.011 5 N -0.330 5.330 6 C 0.127 3.873 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.725 3.275 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.293 3.707 16 O -0.385 6.385 17 C -0.037 4.037 18 O -0.279 6.279 19 C -0.010 4.010 20 C -0.118 4.118 21 C -0.079 4.079 22 C -0.133 4.133 23 C -0.138 4.138 24 C -0.144 4.144 25 C -0.138 4.138 26 C -0.133 4.133 27 H 0.124 0.876 28 H 0.137 0.863 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.739 1.211 -21.897 23.256 hybrid contribution 0.186 0.864 0.542 1.036 sum -7.553 2.075 -21.356 22.747 Atomic orbital electron populations 1.81210 1.13042 1.08668 1.09297 1.29096 0.95089 0.93111 0.92830 1.19922 0.81356 1.02179 1.05863 1.21332 0.82232 0.93176 1.04316 1.48176 1.04800 1.69333 1.10736 1.19375 0.92675 0.96837 0.78365 1.21414 1.36790 0.93542 1.05056 0.92344 1.24916 0.95254 0.96505 0.97316 1.69915 1.38236 1.25124 1.19949 0.86508 0.77698 0.83633 0.79664 1.20663 1.21090 1.19856 1.19948 0.88233 0.78467 0.84034 1.90721 1.13562 1.49257 1.84915 1.22408 0.92279 1.01074 0.87983 1.88013 1.31865 1.91258 1.16756 1.22459 0.95200 0.99512 0.83842 1.20473 0.97425 1.04035 0.89875 1.19790 0.98864 0.93460 0.95770 1.21147 0.98956 0.96254 0.96905 1.21165 0.99066 0.99254 0.94282 1.21166 1.00505 0.93044 0.99650 1.21160 0.99093 0.96750 0.96791 1.21131 0.99009 0.99049 0.94094 0.87615 0.86300 0.88491 0.90794 0.94527 0.93454 0.92645 0.90775 0.90988 0.93182 0.93209 0.89786 0.89756 0.85822 0.86066 0.86226 0.86077 0.85851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.37 18.54 42.15 0.78 -5.59 16 2 C 0.22 2.52 15.43 -20.76 -0.32 2.20 16 3 C -0.05 -0.52 6.03 -29.52 -0.18 -0.70 16 4 C 0.12 1.49 5.17 -4.04 -0.02 1.47 16 5 N -0.60 -10.87 2.46 -175.06 -0.43 -11.30 16 6 C 0.25 5.80 5.16 -5.19 -0.03 5.77 16 7 C -0.53 -14.11 9.39 -34.44 -0.32 -14.43 16 8 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -25.46 13.29 55.43 0.74 -24.73 16 11 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 15 C 0.51 9.66 7.75 -10.99 -0.09 9.58 16 16 O -0.51 -12.51 16.08 -14.35 -0.23 -12.74 16 17 C 0.04 0.58 4.97 36.01 0.18 0.76 16 18 O -0.36 -5.45 9.87 -55.14 -0.54 -5.99 16 19 C 0.07 0.72 5.92 37.15 0.22 0.94 16 20 C -0.08 -0.81 5.71 -27.88 -0.16 -0.97 16 21 C -0.08 -0.73 5.13 -104.62 -0.54 -1.27 16 22 C -0.11 -1.00 9.70 -39.58 -0.38 -1.39 16 23 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 24 C -0.13 -0.95 10.05 -39.58 -0.40 -1.35 16 25 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 26 C -0.11 -0.98 9.70 -39.58 -0.38 -1.37 16 27 H 0.11 0.85 7.22 -51.93 -0.38 0.47 16 28 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.10 1.33 8.07 -51.93 -0.42 0.91 16 30 H 0.07 0.77 6.44 -51.93 -0.33 0.44 16 31 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 32 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.07 0.86 7.40 -51.93 -0.38 0.48 16 35 H 0.07 0.74 7.19 -51.93 -0.37 0.36 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.84 8.09 -51.93 -0.42 0.43 16 39 H 0.08 0.87 8.09 -51.93 -0.42 0.46 16 40 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 41 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 43 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 44 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 385.58 15.07 5.81 5.81 Total: -1.00 -34.43 385.58 -8.67 -43.09 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -6.46 Total: -2.98 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -3.31 Total: -1.79 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 1.09 Total: -41.62 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.78 Total: -18.73 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.43 -8.67 -43.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058827751.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.570 kcal (2) G-P(sol) polarization free energy of solvation -34.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds