Wall clock time and date at job start Tue Mar 31 2020 11:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47186 * 192.83719 * 3 2 1 5 5 N 1.46496 * 109.47244 * 179.97438 * 4 3 2 6 6 C 1.46504 * 119.99872 * 269.99880 * 5 4 3 7 7 C 1.50701 * 109.47017 * 269.99834 * 6 5 4 8 8 H 1.08006 * 119.99862 * 0.02562 * 7 6 5 9 9 C 1.37871 * 119.99877 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00404 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99774 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47299 * 90.00182 * 11 9 7 13 13 H 1.48506 * 109.46790 * 209.99810 * 11 9 7 14 14 H 1.48496 * 109.47425 * 329.99742 * 11 9 7 15 15 C 1.34772 * 119.99937 * 89.99653 * 5 4 3 16 16 O 1.21283 * 119.99762 * 179.97438 * 15 5 4 17 17 C 1.50699 * 120.00459 * 0.02562 * 15 5 4 18 18 O 1.42893 * 109.47627 * 179.97438 * 17 15 5 19 19 C 1.42896 * 114.00368 * 180.02562 * 18 17 15 20 20 C 1.52995 * 109.47376 * 180.02562 * 19 18 17 21 21 C 1.50707 * 109.47301 * 179.97438 * 20 19 18 22 22 C 1.38238 * 119.99792 * 90.00016 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97953 * 21 20 19 27 27 H 1.08995 * 109.47476 * 72.83545 * 3 2 1 28 28 H 1.09005 * 109.47080 * 312.83597 * 3 2 1 29 29 H 1.08995 * 109.47055 * 59.99568 * 4 3 2 30 30 H 1.09000 * 109.46575 * 299.99765 * 4 3 2 31 31 H 1.08998 * 109.47001 * 30.00061 * 6 5 4 32 32 H 1.09003 * 109.46879 * 150.00491 * 6 5 4 33 33 H 0.96996 * 120.00260 * 180.02562 * 10 9 7 34 34 H 1.09006 * 109.46845 * 59.99606 * 17 15 5 35 35 H 1.08998 * 109.46993 * 300.00606 * 17 15 5 36 36 H 1.08995 * 109.47430 * 59.99865 * 19 18 17 37 37 H 1.09004 * 109.46934 * 300.00059 * 19 18 17 38 38 H 1.09005 * 109.47610 * 60.00060 * 20 19 18 39 39 H 1.09000 * 109.47256 * 299.99402 * 20 19 18 40 40 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 41 41 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 44 44 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.4073 0.3205 5 7 4.5823 1.4079 0.3211 6 6 5.3144 1.1265 1.5585 7 6 5.5648 2.4153 2.2982 8 1 5.2134 3.3505 1.8878 9 6 6.2425 2.4007 3.4988 10 7 6.6709 1.2620 3.9983 11 14 6.5523 3.9983 4.4160 12 1 5.4220 4.2648 5.3415 13 1 7.8127 3.8863 5.1933 14 1 6.6685 5.1135 3.4425 15 6 5.2565 1.6672 -0.8167 16 8 6.4694 1.6681 -0.8160 17 6 4.5036 1.9572 -2.0894 18 8 5.4324 2.1991 -3.1480 19 6 4.8184 2.4864 -4.4059 20 6 5.9017 2.7265 -5.4592 21 6 5.2540 3.0288 -6.7860 22 6 4.9570 4.3348 -7.1285 23 6 4.3634 4.6122 -8.3457 24 6 4.0674 3.5837 -9.2207 25 6 4.3596 2.2773 -8.8760 26 6 4.9574 2.0004 -7.6607 27 1 2.9715 -0.3024 -0.9818 28 1 2.9716 -0.6979 0.7536 29 1 2.7538 1.7104 1.3023 30 1 2.7537 2.1058 -0.4331 31 1 4.7253 0.4566 2.1848 32 1 6.2671 0.6548 1.3177 33 1 7.1473 1.2516 4.8431 34 1 3.8768 2.8378 -1.9481 35 1 3.8769 1.1024 -2.3436 36 1 4.1982 3.3778 -4.3123 37 1 4.1984 1.6425 -4.7086 38 1 6.5216 1.8348 -5.5528 39 1 6.5220 3.5702 -5.1568 40 1 5.1887 5.1383 -6.4450 41 1 4.1310 5.6324 -8.6131 42 1 3.6041 3.8006 -10.1719 43 1 4.1243 1.4734 -9.5577 44 1 5.1901 0.9802 -7.3935 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058827751.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:06 Heat of formation + Delta-G solvation = -53.742133 kcal Electronic energy + Delta-G solvation = -24835.800421 eV Core-core repulsion = 21138.435835 eV Total energy + Delta-G solvation = -3697.364586 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.86305 -40.18879 -38.59637 -37.93050 -36.65858 -34.87937 -34.34958 -32.17210 -31.74143 -30.62809 -29.34049 -27.73038 -25.31770 -24.56971 -24.17785 -23.42968 -21.82210 -20.11049 -18.84451 -18.34661 -18.22458 -17.74898 -17.29187 -17.27261 -16.81223 -16.25974 -16.10467 -15.80199 -15.67737 -15.44922 -15.07968 -14.63032 -14.38784 -14.21438 -14.12209 -13.82109 -13.66150 -13.63210 -13.53854 -13.31595 -13.17094 -12.93115 -12.71432 -12.51499 -12.36472 -12.21814 -12.17018 -11.91936 -11.87583 -11.75551 -11.66743 -10.60755 -10.57620 -10.52205 -9.79100 -9.61268 -9.50110 -8.17472 -6.29542 0.43839 0.52931 1.40128 1.42927 1.52074 1.66951 1.82421 1.85605 2.05192 2.42848 2.78334 2.97302 3.14133 3.25420 3.76261 3.92716 3.98751 4.03074 4.11388 4.20788 4.21957 4.24514 4.32775 4.34442 4.37258 4.50961 4.60095 4.66161 4.67846 4.84759 4.96770 4.98999 5.06261 5.11101 5.21585 5.21818 5.34278 5.60106 5.60777 5.66038 5.74866 5.86195 6.13212 6.15133 6.17511 6.61713 6.73532 6.80881 7.34461 7.50532 8.89386 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012462 B = 0.002632 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.225823 B =10634.073318 C =12118.464943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.247 3.753 3 C -0.039 4.039 4 C 0.110 3.890 5 N -0.595 5.595 6 C 0.260 3.740 7 C -0.541 4.541 8 H 0.053 0.947 9 C 0.010 3.990 10 N -0.926 5.926 11 Si 0.958 3.042 12 H -0.266 1.266 13 H -0.285 1.285 14 H -0.275 1.275 15 C 0.499 3.501 16 O -0.580 6.580 17 C 0.052 3.948 18 O -0.397 6.397 19 C 0.066 3.934 20 C -0.078 4.078 21 C -0.090 4.090 22 C -0.128 4.128 23 C -0.127 4.127 24 C -0.130 4.130 25 C -0.126 4.126 26 C -0.126 4.126 27 H 0.137 0.863 28 H 0.122 0.878 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.040 0.960 32 H 0.003 0.997 33 H 0.265 0.735 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.127 0.873 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.044 1.960 -23.805 25.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.071 4.071 3 C -0.080 4.080 4 C -0.014 4.014 5 N -0.327 5.327 6 C 0.139 3.861 7 C -0.579 4.579 8 H 0.072 0.928 9 C -0.189 4.189 10 N -0.566 5.566 11 Si 0.784 3.216 12 H -0.191 1.191 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.288 3.712 16 O -0.459 6.459 17 C -0.027 4.027 18 O -0.316 6.316 19 C -0.010 4.010 20 C -0.115 4.115 21 C -0.090 4.090 22 C -0.146 4.146 23 C -0.145 4.145 24 C -0.148 4.148 25 C -0.144 4.144 26 C -0.144 4.144 27 H 0.155 0.845 28 H 0.139 0.861 29 H 0.106 0.894 30 H 0.126 0.874 31 H 0.057 0.943 32 H 0.021 0.979 33 H 0.074 0.926 34 H 0.120 0.880 35 H 0.134 0.866 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.145 0.855 41 H 0.156 0.844 42 H 0.159 0.841 43 H 0.158 0.842 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.811 1.876 -23.621 25.646 hybrid contribution 0.816 0.652 1.008 1.452 sum -8.995 2.528 -22.613 24.468 Atomic orbital electron populations 1.81258 1.14404 1.10021 1.11004 1.29108 0.94882 0.91752 0.91328 1.19849 0.80130 1.00303 1.07751 1.21594 0.78685 0.95857 1.05265 1.48035 1.06924 1.68702 1.09039 1.18838 0.91558 0.95358 0.80383 1.21752 1.36441 0.94420 1.05314 0.92824 1.25734 0.95205 0.99550 0.98413 1.70020 1.39103 1.27003 1.20429 0.85549 0.77881 0.79713 0.78477 1.19081 1.21054 1.19954 1.20998 0.87794 0.76770 0.85666 1.90687 1.16766 1.52261 1.86141 1.22417 0.91363 1.04001 0.84946 1.87979 1.33653 1.91702 1.18302 1.22628 0.95440 1.00738 0.82154 1.20414 0.97328 1.03292 0.90478 1.19758 0.99687 0.94030 0.95534 1.21312 0.99433 0.96267 0.97634 1.21439 0.98676 1.00407 0.93964 1.21499 1.00028 0.92896 1.00406 1.21455 0.98572 0.97589 0.96761 1.21318 0.99233 0.99355 0.94455 0.84493 0.86053 0.89418 0.87359 0.94251 0.97927 0.92560 0.88002 0.86586 0.92041 0.91308 0.90388 0.90881 0.85455 0.84364 0.84138 0.84167 0.85040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.00 18.54 20.01 0.37 -12.63 16 2 C 0.25 5.04 15.43 89.44 1.38 6.42 16 3 C -0.04 -0.66 6.03 28.79 0.17 -0.49 16 4 C 0.11 2.56 5.17 86.38 0.45 3.00 16 5 N -0.59 -21.27 2.46 -826.16 -2.03 -23.30 16 6 C 0.26 12.55 5.16 85.63 0.44 12.99 16 7 C -0.54 -29.29 9.39 25.60 0.24 -29.05 16 8 H 0.05 2.89 7.81 -2.91 -0.02 2.86 16 9 C 0.01 0.56 5.46 84.65 0.46 1.02 16 10 N -0.93 -53.85 13.29 21.45 0.28 -53.56 16 11 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 13 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 14 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 15 C 0.50 18.76 7.75 87.66 0.68 19.44 16 16 O -0.58 -29.41 16.08 16.00 0.26 -29.16 16 17 C 0.05 1.27 4.97 71.24 0.35 1.62 16 18 O -0.40 -11.46 9.87 -129.94 -1.28 -12.74 16 19 C 0.07 1.31 5.92 71.98 0.43 1.73 16 20 C -0.08 -1.52 5.71 29.85 0.17 -1.35 16 21 C -0.09 -1.57 5.13 -19.86 -0.10 -1.68 16 22 C -0.13 -2.11 9.70 22.27 0.22 -1.89 16 23 C -0.13 -1.77 10.05 22.27 0.22 -1.55 16 24 C -0.13 -1.67 10.05 22.27 0.22 -1.45 16 25 C -0.13 -1.68 10.05 22.27 0.22 -1.46 16 26 C -0.13 -1.96 9.70 22.27 0.22 -1.74 16 27 H 0.14 1.56 7.22 -2.39 -0.02 1.54 16 28 H 0.12 2.12 8.14 -2.38 -0.02 2.10 16 29 H 0.09 2.24 8.07 -2.39 -0.02 2.22 16 30 H 0.11 1.81 6.44 -2.39 -0.02 1.79 16 31 H 0.04 1.86 8.07 -2.39 -0.02 1.84 16 32 H 0.00 0.15 7.42 -2.39 -0.02 0.13 16 33 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 34 H 0.10 1.95 7.40 -2.38 -0.02 1.94 16 35 H 0.12 1.81 7.19 -2.39 -0.02 1.79 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.08 1.57 8.09 -2.38 -0.02 1.55 16 39 H 0.07 1.55 8.09 -2.39 -0.02 1.53 16 40 H 0.13 1.87 8.06 -2.91 -0.02 1.85 16 41 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 42 H 0.14 1.14 8.06 -2.91 -0.02 1.11 16 43 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 44 H 0.13 1.73 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -78.60 385.58 6.39 -72.21 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 0.99 Total: 7.76 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 5.78 Total: 5.58 kcal Atomic # 7 Polarization: -88.12 SS G_CDS: -1.37 Total: -89.50 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -1.03 Total: -41.90 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -78.60 6.39 -72.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058827751.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.466 kcal (2) G-P(sol) polarization free energy of solvation -78.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds