Wall clock time and date at job start Tue Mar 31 2020 11:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00180 * 2 1 4 4 H 1.48499 * 109.46883 * 273.67998 * 3 2 1 5 5 H 1.48494 * 109.46983 * 33.67520 * 3 2 1 6 6 H 1.48497 * 109.47373 * 153.67896 * 3 2 1 7 7 C 1.38814 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99942 * 339.32989 * 7 2 1 9 9 N 1.36937 * 120.00303 * 159.32800 * 7 2 1 10 10 C 1.46958 * 120.59127 * 332.32116 * 9 7 2 11 11 C 1.53370 * 108.63748 * 235.20198 * 10 9 7 12 12 N 1.46969 * 108.63525 * 310.58416 * 11 10 9 13 13 S 1.65599 * 120.58916 * 235.19771 * 12 11 10 14 14 O 1.42099 * 104.28018 * 333.93097 * 13 12 11 15 15 O 1.42098 * 104.27805 * 206.06589 * 13 12 11 16 16 C 1.81408 * 104.44811 * 90.00064 * 13 12 11 17 17 C 1.53002 * 109.47211 * 179.97438 * 16 13 12 18 18 C 1.52997 * 109.47246 * 184.99904 * 17 16 13 19 19 C 1.52994 * 109.47055 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.47438 * 60.00221 * 19 18 17 21 21 C 1.53000 * 109.46626 * 299.99598 * 20 19 18 22 22 C 1.53001 * 109.47214 * 60.00561 * 21 20 19 23 23 C 1.46955 * 118.81342 * 55.47239 * 12 11 10 24 24 C 1.46960 * 120.59228 * 152.30115 * 9 7 2 25 25 H 0.97000 * 119.99803 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.61152 * 115.46323 * 10 9 7 27 27 H 1.09001 * 109.61770 * 354.95343 * 10 9 7 28 28 H 1.08994 * 109.61763 * 190.83084 * 11 10 9 29 29 H 1.09010 * 109.60761 * 70.32427 * 11 10 9 30 30 H 1.08994 * 109.47069 * 59.99291 * 16 13 12 31 31 H 1.09008 * 109.46702 * 299.99465 * 16 13 12 32 32 H 1.09004 * 109.46977 * 305.00066 * 17 16 13 33 33 H 1.09003 * 109.46926 * 59.99568 * 18 17 16 34 34 H 1.09004 * 109.46847 * 300.00322 * 18 17 16 35 35 H 1.09003 * 109.47387 * 299.99397 * 19 18 17 36 36 H 1.09002 * 109.47023 * 179.97438 * 19 18 17 37 37 H 1.08993 * 109.47469 * 59.99278 * 20 19 18 38 38 H 1.08997 * 109.47114 * 180.02562 * 20 19 18 39 39 H 1.09005 * 109.46969 * 179.97438 * 21 20 19 40 40 H 1.08994 * 109.47669 * 299.99899 * 21 20 19 41 41 H 1.09002 * 109.47353 * 179.97438 * 22 21 20 42 42 H 1.08994 * 109.47343 * 59.99138 * 22 21 20 43 43 H 1.09000 * 109.61196 * 64.26955 * 23 12 11 44 44 H 1.09004 * 109.61003 * 184.78240 * 23 12 11 45 45 H 1.08997 * 109.60789 * 244.53745 * 24 9 7 46 46 H 1.08998 * 109.61363 * 5.05404 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4199 2.0913 -1.3972 5 1 1.4888 2.6289 0.7763 6 1 3.5845 1.4190 0.6208 7 6 2.0103 -1.2021 0.0005 8 1 1.5225 -2.1072 0.3311 9 7 3.3135 -1.2405 -0.4181 10 6 3.8145 -0.2633 -1.3947 11 6 4.4237 -1.0228 -2.5797 12 7 5.3465 -2.0418 -2.0600 13 16 6.9225 -2.0882 -2.5664 14 8 6.8937 -1.4938 -3.8567 15 8 7.3064 -3.4453 -2.3932 16 6 7.8061 -1.0224 -1.3941 17 6 9.2913 -0.9833 -1.7598 18 6 10.0565 -0.1869 -0.7010 19 6 11.5416 -0.1485 -1.0664 20 6 11.7140 0.5210 -2.4313 21 6 10.9488 -0.2755 -3.4901 22 6 9.4635 -0.3139 -3.1249 23 6 4.8441 -3.0224 -1.0877 24 6 4.2363 -2.2594 0.1016 25 1 -0.4850 0.8401 -0.0004 26 1 4.5773 0.3610 -0.9293 27 1 2.9913 0.3600 -1.7439 28 1 4.9683 -0.3278 -3.2188 29 1 3.6308 -1.5050 -3.1518 30 1 7.6909 -1.4182 -0.3852 31 1 7.3941 -0.0141 -1.4381 32 1 9.6818 -2.0001 -1.8023 33 1 9.9340 -0.6641 0.2713 34 1 9.6658 0.8298 -0.6585 35 1 11.9320 -1.1653 -1.1085 36 1 12.0867 0.4193 -0.3123 37 1 11.3237 1.5378 -2.3892 38 1 12.7720 0.5479 -2.6918 39 1 11.0712 0.2016 -4.4625 40 1 11.3390 -1.2923 -3.5323 41 1 8.9183 -0.8810 -3.8794 42 1 9.0733 0.7029 -3.0826 43 1 4.0805 -3.6437 -1.5558 44 1 5.6665 -3.6483 -0.7410 45 1 5.0291 -1.7773 0.6735 46 1 3.6917 -2.9545 0.7406 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078447585.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:57 Heat of formation + Delta-G solvation = -60.503590 kcal Electronic energy + Delta-G solvation = -26257.171429 eV Core-core repulsion = 22694.957595 eV Total energy + Delta-G solvation = -3562.213834 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.00439 -37.95449 -37.07435 -35.86479 -33.95528 -33.11512 -31.41867 -31.02339 -30.76439 -27.14108 -26.61393 -23.59855 -23.01279 -22.90107 -21.88103 -20.34304 -20.03229 -18.66491 -17.75459 -16.61920 -16.21298 -16.07790 -15.70228 -15.13838 -14.79442 -14.50247 -14.32050 -14.29638 -14.15382 -13.95368 -13.47454 -13.15652 -12.89738 -12.73477 -12.60527 -12.34501 -12.26123 -12.18597 -11.91737 -11.74342 -11.61215 -11.42057 -11.35709 -11.14447 -11.04605 -10.92595 -10.77978 -10.45081 -10.42689 -10.32403 -10.13906 -9.88546 -9.59155 -9.07475 -8.53346 -7.03649 -6.02811 -3.39744 0.33387 2.74909 3.23478 3.40789 3.42827 3.85071 4.11846 4.24062 4.39268 4.43610 4.44173 4.77181 4.80306 4.84734 4.92713 5.02608 5.09851 5.11388 5.22613 5.25621 5.29652 5.38739 5.50148 5.53180 5.59258 5.69908 5.76831 5.83207 5.84385 5.86771 5.88068 5.88524 5.98062 5.99319 6.04298 6.17152 6.22342 6.28835 6.45903 6.47075 6.72313 6.90384 7.85625 8.24935 8.83881 9.62633 9.99355 11.12975 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.019363 B = 0.004108 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.681068 B = 6814.949093 C = 7420.596022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.025 3.975 3 Si 0.880 3.120 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.271 1.271 7 C -0.263 4.263 8 H 0.088 0.912 9 N -0.602 5.602 10 C 0.110 3.890 11 C 0.105 3.895 12 N -0.991 5.991 13 S 2.604 3.396 14 O -0.957 6.957 15 O -0.961 6.961 16 C -0.630 4.630 17 C -0.074 4.074 18 C -0.107 4.107 19 C -0.122 4.122 20 C -0.122 4.122 21 C -0.118 4.118 22 C -0.147 4.147 23 C 0.102 3.898 24 C 0.134 3.866 25 H 0.264 0.736 26 H 0.028 0.972 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.026 0.974 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.603 -0.413 -3.352 21.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.174 4.174 3 Si 0.710 3.290 4 H -0.214 1.214 5 H -0.230 1.230 6 H -0.196 1.196 7 C -0.391 4.391 8 H 0.105 0.895 9 N -0.326 5.326 10 C -0.017 4.017 11 C -0.022 4.022 12 N -0.830 5.830 13 S 2.699 3.301 14 O -0.947 6.947 15 O -0.951 6.951 16 C -0.758 4.758 17 C -0.094 4.094 18 C -0.145 4.145 19 C -0.159 4.159 20 C -0.159 4.159 21 C -0.156 4.156 22 C -0.185 4.185 23 C -0.024 4.024 24 C 0.006 3.994 25 H 0.074 0.926 26 H 0.046 0.954 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.044 0.956 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 21.726 -0.822 -4.066 22.119 hybrid contribution 0.253 1.530 0.704 1.703 sum 21.979 0.708 -3.361 22.246 Atomic orbital electron populations 1.69833 1.05724 1.26654 1.52530 1.25289 0.95215 0.97559 0.99375 0.86993 0.80107 0.84821 0.77097 1.21437 1.22989 1.19612 1.18936 0.84818 0.94877 1.40499 0.89490 1.44199 1.08608 1.33798 1.45954 1.21759 0.97843 0.92290 0.89787 1.22068 0.93117 0.90041 0.96950 1.57438 1.25815 1.41686 1.58043 1.05149 0.73659 0.75432 0.75901 1.93554 1.85547 1.79638 1.35942 1.93563 1.82634 1.31824 1.87120 1.30802 1.08339 1.17937 1.18762 1.20894 0.90783 1.01110 0.96572 1.21538 0.94753 1.00509 0.97703 1.21568 0.96138 1.01133 0.97088 1.21569 0.99970 0.99487 0.94895 1.21510 0.94596 1.00748 0.98716 1.22076 0.97768 1.02588 0.96025 1.22157 0.99399 0.90261 0.90622 1.21422 0.93005 0.91923 0.93046 0.92649 0.95367 0.89866 0.90013 0.90472 0.84891 0.84932 0.89980 0.91513 0.91434 0.91801 0.91794 0.91861 0.91996 0.91476 0.91771 0.89999 0.90729 0.90727 0.89961 0.95591 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.97 55.49 0.78 -26.20 16 2 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 3 Si 0.88 21.38 24.38 -169.99 -4.14 17.24 16 4 H -0.29 -6.66 6.64 56.52 0.38 -6.29 16 5 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.27 -6.41 6.64 56.52 0.38 -6.03 16 7 C -0.26 -7.03 10.03 -15.06 -0.15 -7.18 16 8 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 9 N -0.60 -13.49 2.74 -171.77 -0.47 -13.96 16 10 C 0.11 2.25 4.36 -3.60 -0.02 2.24 16 11 C 0.11 1.82 6.48 -3.59 -0.02 1.80 16 12 N -0.99 -15.90 3.19 -113.00 -0.36 -16.26 16 13 S 2.60 37.75 5.07 -107.50 -0.55 37.21 16 14 O -0.96 -15.63 14.45 -57.54 -0.83 -16.46 16 15 O -0.96 -15.95 16.69 -57.54 -0.96 -16.91 16 16 C -0.63 -7.01 5.62 37.16 0.21 -6.80 16 17 C -0.07 -0.76 2.19 -90.62 -0.20 -0.95 16 18 C -0.11 -0.94 5.20 -26.74 -0.14 -1.08 16 19 C -0.12 -0.93 5.92 -26.74 -0.16 -1.09 16 20 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 21 C -0.12 -1.03 5.92 -26.73 -0.16 -1.18 16 22 C -0.15 -1.54 4.89 -26.73 -0.13 -1.67 16 23 C 0.10 1.63 6.52 -3.37 -0.02 1.61 16 24 C 0.13 2.41 6.69 -3.37 -0.02 2.39 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.03 0.55 7.18 -51.93 -0.37 0.18 16 27 H 0.08 1.86 4.41 -51.93 -0.23 1.63 16 28 H 0.08 1.24 7.06 -51.93 -0.37 0.88 16 29 H 0.08 1.38 8.14 -51.92 -0.42 0.96 16 30 H 0.13 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.13 1.38 8.14 -51.92 -0.42 0.96 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.98 5.61 -51.93 -0.29 0.69 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.08 1.12 7.05 -51.93 -0.37 0.76 16 45 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.08 1.34 7.93 -51.93 -0.41 0.93 16 LS Contribution 353.60 15.07 5.33 5.33 Total: -1.00 -32.43 353.60 -10.26 -42.69 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -7.99 Total: -0.24 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -1.06 Total: -12.42 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -0.06 Total: -56.42 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -1.79 Total: -33.37 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.14 Total: 17.24 kcal Atomic # 16 Polarization: 37.75 SS G_CDS: -0.55 Total: 37.21 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.43 -10.26 -42.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078447585.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.817 kcal (2) G-P(sol) polarization free energy of solvation -32.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds