Wall clock time and date at job start Tue Mar 31 2020 11:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00180 * 2 1 4 4 H 1.48499 * 109.46883 * 273.67998 * 3 2 1 5 5 H 1.48494 * 109.46983 * 33.67520 * 3 2 1 6 6 H 1.48497 * 109.47373 * 153.67896 * 3 2 1 7 7 C 1.38814 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99942 * 339.32989 * 7 2 1 9 9 N 1.36937 * 120.00303 * 159.32800 * 7 2 1 10 10 C 1.46958 * 120.59127 * 332.32116 * 9 7 2 11 11 C 1.53370 * 108.63748 * 235.20198 * 10 9 7 12 12 N 1.46969 * 108.63525 * 310.58416 * 11 10 9 13 13 S 1.65599 * 120.58916 * 235.19771 * 12 11 10 14 14 O 1.42099 * 104.28018 * 333.93097 * 13 12 11 15 15 O 1.42098 * 104.27805 * 206.06589 * 13 12 11 16 16 C 1.81408 * 104.44811 * 90.00064 * 13 12 11 17 17 C 1.53002 * 109.47211 * 179.97438 * 16 13 12 18 18 C 1.52997 * 109.47246 * 184.99904 * 17 16 13 19 19 C 1.52994 * 109.47055 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.47438 * 60.00221 * 19 18 17 21 21 C 1.53000 * 109.46626 * 299.99598 * 20 19 18 22 22 C 1.53001 * 109.47214 * 60.00561 * 21 20 19 23 23 C 1.46955 * 118.81342 * 55.47239 * 12 11 10 24 24 C 1.46960 * 120.59228 * 152.30115 * 9 7 2 25 25 H 0.97000 * 119.99803 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.61152 * 115.46323 * 10 9 7 27 27 H 1.09001 * 109.61770 * 354.95343 * 10 9 7 28 28 H 1.08994 * 109.61763 * 190.83084 * 11 10 9 29 29 H 1.09010 * 109.60761 * 70.32427 * 11 10 9 30 30 H 1.08994 * 109.47069 * 59.99291 * 16 13 12 31 31 H 1.09008 * 109.46702 * 299.99465 * 16 13 12 32 32 H 1.09004 * 109.46977 * 305.00066 * 17 16 13 33 33 H 1.09003 * 109.46926 * 59.99568 * 18 17 16 34 34 H 1.09004 * 109.46847 * 300.00322 * 18 17 16 35 35 H 1.09003 * 109.47387 * 299.99397 * 19 18 17 36 36 H 1.09002 * 109.47023 * 179.97438 * 19 18 17 37 37 H 1.08993 * 109.47469 * 59.99278 * 20 19 18 38 38 H 1.08997 * 109.47114 * 180.02562 * 20 19 18 39 39 H 1.09005 * 109.46969 * 179.97438 * 21 20 19 40 40 H 1.08994 * 109.47669 * 299.99899 * 21 20 19 41 41 H 1.09002 * 109.47353 * 179.97438 * 22 21 20 42 42 H 1.08994 * 109.47343 * 59.99138 * 22 21 20 43 43 H 1.09000 * 109.61196 * 64.26955 * 23 12 11 44 44 H 1.09004 * 109.61003 * 184.78240 * 23 12 11 45 45 H 1.08997 * 109.60789 * 244.53745 * 24 9 7 46 46 H 1.08998 * 109.61363 * 5.05404 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4199 2.0913 -1.3972 5 1 1.4888 2.6289 0.7763 6 1 3.5845 1.4190 0.6208 7 6 2.0103 -1.2021 0.0005 8 1 1.5225 -2.1072 0.3311 9 7 3.3135 -1.2405 -0.4181 10 6 3.8145 -0.2633 -1.3947 11 6 4.4237 -1.0228 -2.5797 12 7 5.3465 -2.0418 -2.0600 13 16 6.9225 -2.0882 -2.5664 14 8 6.8937 -1.4938 -3.8567 15 8 7.3064 -3.4453 -2.3932 16 6 7.8061 -1.0224 -1.3941 17 6 9.2913 -0.9833 -1.7598 18 6 10.0565 -0.1869 -0.7010 19 6 11.5416 -0.1485 -1.0664 20 6 11.7140 0.5210 -2.4313 21 6 10.9488 -0.2755 -3.4901 22 6 9.4635 -0.3139 -3.1249 23 6 4.8441 -3.0224 -1.0877 24 6 4.2363 -2.2594 0.1016 25 1 -0.4850 0.8401 -0.0004 26 1 4.5773 0.3610 -0.9293 27 1 2.9913 0.3600 -1.7439 28 1 4.9683 -0.3278 -3.2188 29 1 3.6308 -1.5050 -3.1518 30 1 7.6909 -1.4182 -0.3852 31 1 7.3941 -0.0141 -1.4381 32 1 9.6818 -2.0001 -1.8023 33 1 9.9340 -0.6641 0.2713 34 1 9.6658 0.8298 -0.6585 35 1 11.9320 -1.1653 -1.1085 36 1 12.0867 0.4193 -0.3123 37 1 11.3237 1.5378 -2.3892 38 1 12.7720 0.5479 -2.6918 39 1 11.0712 0.2016 -4.4625 40 1 11.3390 -1.2923 -3.5323 41 1 8.9183 -0.8810 -3.8794 42 1 9.0733 0.7029 -3.0826 43 1 4.0805 -3.6437 -1.5558 44 1 5.6665 -3.6483 -0.7410 45 1 5.0291 -1.7773 0.6735 46 1 3.6917 -2.9545 0.7406 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078447585.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:56 Heat of formation + Delta-G solvation = -82.246545 kcal Electronic energy + Delta-G solvation = -26258.114274 eV Core-core repulsion = 22694.957595 eV Total energy + Delta-G solvation = -3563.156679 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.69875 -39.44428 -38.27970 -37.06947 -35.63446 -33.85111 -33.32636 -32.22577 -31.67583 -28.38294 -27.86461 -25.14819 -24.62792 -23.59001 -22.68878 -21.73210 -20.73755 -19.98412 -19.13398 -18.19442 -17.42011 -17.26486 -17.05756 -16.33948 -15.97602 -15.76757 -15.50185 -15.30837 -15.12501 -15.01217 -14.90363 -14.56857 -14.19012 -13.93993 -13.72306 -13.47864 -13.41492 -13.19760 -13.14977 -12.89330 -12.83127 -12.74124 -12.45398 -12.22575 -12.12592 -12.03386 -11.95758 -11.88866 -11.60467 -11.49659 -11.40165 -11.08857 -10.93605 -10.74786 -10.12953 -8.85121 -8.14771 -5.47539 -0.78099 1.32127 1.43784 1.52079 1.57810 2.43472 2.79837 3.05535 3.07679 3.35027 3.38727 3.59849 3.69476 3.75075 4.05028 4.14368 4.19859 4.27775 4.34754 4.36160 4.39461 4.43325 4.46445 4.55227 4.58761 4.60966 4.69469 4.72503 4.74245 4.87988 4.96124 5.02212 5.07452 5.14327 5.18756 5.23430 5.25336 5.32701 5.36547 5.38648 5.54460 5.56033 5.87080 6.14925 6.91456 7.62330 8.02415 9.05029 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.019363 B = 0.004108 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.681068 B = 6814.949093 C = 7420.596022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.036 4.036 3 Si 0.943 3.057 4 H -0.271 1.271 5 H -0.315 1.315 6 H -0.252 1.252 7 C -0.249 4.249 8 H 0.052 0.948 9 N -0.617 5.617 10 C 0.104 3.896 11 C 0.112 3.888 12 N -0.997 5.997 13 S 2.605 3.395 14 O -0.980 6.980 15 O -0.986 6.986 16 C -0.608 4.608 17 C -0.078 4.078 18 C -0.106 4.106 19 C -0.122 4.122 20 C -0.121 4.121 21 C -0.121 4.121 22 C -0.153 4.153 23 C 0.107 3.893 24 C 0.129 3.871 25 H 0.261 0.739 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.155 0.845 31 H 0.148 0.852 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.110 0.890 45 H 0.053 0.947 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.102 0.695 -2.853 25.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.231 4.231 3 Si 0.772 3.228 4 H -0.197 1.197 5 H -0.244 1.244 6 H -0.176 1.176 7 C -0.379 4.379 8 H 0.070 0.930 9 N -0.342 5.342 10 C -0.022 4.022 11 C -0.015 4.015 12 N -0.834 5.834 13 S 2.704 3.296 14 O -0.970 6.970 15 O -0.977 6.977 16 C -0.741 4.741 17 C -0.099 4.099 18 C -0.144 4.144 19 C -0.160 4.160 20 C -0.158 4.158 21 C -0.158 4.158 22 C -0.191 4.191 23 C -0.020 4.020 24 C 0.003 3.997 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.124 0.876 29 H 0.080 0.920 30 H 0.173 0.827 31 H 0.166 0.834 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.128 0.872 45 H 0.071 0.929 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 25.256 0.235 -3.609 25.514 hybrid contribution -0.760 1.075 0.531 1.419 sum 24.496 1.310 -3.078 24.724 Atomic orbital electron populations 1.69981 1.07616 1.27252 1.55559 1.25938 0.95790 1.01155 1.00202 0.85952 0.79147 0.79984 0.77737 1.19744 1.24381 1.17630 1.18865 0.86747 0.93580 1.38709 0.92985 1.44315 1.07808 1.35151 1.46911 1.21848 0.97656 0.92255 0.90446 1.21865 0.93413 0.90434 0.95819 1.57455 1.26518 1.41403 1.58016 1.05064 0.73122 0.75339 0.76071 1.93526 1.85680 1.79762 1.38078 1.93529 1.82642 1.33954 1.87535 1.30625 1.08176 1.17338 1.17974 1.21010 0.90200 1.01633 0.97021 1.21559 0.95130 1.00363 0.97373 1.21591 0.95567 1.01507 0.97325 1.21571 1.00443 0.99250 0.94533 1.21544 0.93650 1.01191 0.99420 1.22123 0.98774 1.02444 0.95745 1.22066 1.00029 0.90106 0.89756 1.21625 0.92849 0.91186 0.94054 0.93003 0.93143 0.92050 0.87613 0.92013 0.82691 0.83381 0.89850 0.90646 0.91139 0.91617 0.90615 0.91755 0.90910 0.91141 0.91675 0.91924 0.90391 0.92109 0.87220 0.92910 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.07 13.97 21.65 0.30 -58.76 16 2 C -0.04 -2.04 5.23 84.86 0.44 -1.60 16 3 Si 0.94 43.92 24.38 68.60 1.67 45.59 16 4 H -0.27 -11.79 6.64 99.48 0.66 -11.13 16 5 H -0.31 -15.19 7.11 99.48 0.71 -14.48 16 6 H -0.25 -10.84 6.64 99.48 0.66 -10.18 16 7 C -0.25 -13.55 10.03 84.03 0.84 -12.71 16 8 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 9 N -0.62 -26.99 2.74 -697.36 -1.91 -28.90 16 10 C 0.10 4.04 4.36 86.42 0.38 4.41 16 11 C 0.11 3.68 6.48 86.41 0.56 4.24 16 12 N -1.00 -29.84 3.19 -511.43 -1.63 -31.47 16 13 S 2.61 69.54 5.07 -56.49 -0.29 69.25 16 14 O -0.98 -30.51 14.45 -127.65 -1.84 -32.36 16 15 O -0.99 -30.89 16.69 -127.65 -2.13 -33.02 16 16 C -0.61 -11.14 5.62 71.98 0.40 -10.74 16 17 C -0.08 -1.35 2.19 -10.79 -0.02 -1.37 16 18 C -0.11 -1.44 5.20 30.59 0.16 -1.28 16 19 C -0.12 -1.45 5.92 30.59 0.18 -1.27 16 20 C -0.12 -1.47 5.92 30.59 0.18 -1.29 16 21 C -0.12 -1.82 5.92 30.59 0.18 -1.64 16 22 C -0.15 -2.85 4.89 30.60 0.15 -2.70 16 23 C 0.11 3.21 6.52 86.57 0.56 3.78 16 24 C 0.13 4.40 6.69 86.57 0.58 4.98 16 25 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 26 H 0.05 1.75 7.18 -2.38 -0.02 1.73 16 27 H 0.06 2.65 4.41 -2.39 -0.01 2.64 16 28 H 0.11 2.96 7.06 -2.39 -0.02 2.95 16 29 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 30 H 0.16 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.15 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.06 1.41 5.61 -2.39 -0.01 1.40 16 42 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.11 2.70 7.05 -2.38 -0.02 2.68 16 45 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.07 2.51 7.93 -2.39 -0.02 2.49 16 Total: -1.00 -71.07 353.60 -0.38 -71.45 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.85 Total: 15.41 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: 4.60 Total: -17.18 kcal Atomic # 7 Polarization: -115.90 SS G_CDS: -3.24 Total: -119.14 kcal Atomic # 8 Polarization: -61.41 SS G_CDS: -3.98 Total: -65.38 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.67 Total: 45.59 kcal Atomic # 16 Polarization: 69.54 SS G_CDS: -0.29 Total: 69.25 kcal Total: -71.07 -0.38 -71.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078447585.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.799 kcal (2) G-P(sol) polarization free energy of solvation -71.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds