Wall clock time and date at job start Tue Mar 31 2020 10:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00071 * 2 1 4 4 H 1.48495 * 109.47485 * 270.00398 * 3 2 1 5 5 H 1.48503 * 109.46840 * 30.00411 * 3 2 1 6 6 H 1.48504 * 109.47220 * 150.00030 * 3 2 1 7 7 C 1.37880 * 120.00277 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00132 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99628 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46914 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.46961 * 180.02562 * 10 9 7 12 12 O 1.42095 * 110.54874 * 68.37725 * 11 10 9 13 13 O 1.42106 * 110.54096 * 291.61926 * 11 10 9 14 14 N 1.65598 * 104.45042 * 180.02562 * 11 10 9 15 15 C 1.47087 * 120.88550 * 89.99358 * 14 11 10 16 16 C 1.53242 * 108.51879 * 128.79426 * 15 14 11 17 17 N 1.46894 * 109.34141 * 53.83541 * 16 15 14 18 18 C 1.46897 * 111.00169 * 172.74129 * 17 16 15 19 19 C 1.54261 * 110.03257 * 298.55610 * 18 17 16 20 20 C 1.54896 * 104.19512 * 217.10429 * 19 18 17 21 21 C 1.54886 * 102.74572 * 37.93860 * 20 19 18 22 22 C 1.53872 * 110.03366 * 181.38546 * 18 17 16 23 23 C 1.46902 * 111.26931 * 296.89327 * 17 16 15 24 24 C 1.47080 * 120.88253 * 269.97843 * 14 11 10 25 25 H 0.97005 * 120.00112 * 359.97438 * 1 2 3 26 26 H 1.09008 * 109.46722 * 60.00611 * 9 7 2 27 27 H 1.08998 * 109.47624 * 300.00681 * 9 7 2 28 28 H 1.08997 * 109.47213 * 60.00269 * 10 9 7 29 29 H 1.08999 * 109.47082 * 300.00213 * 10 9 7 30 30 H 1.09000 * 109.62246 * 9.08749 * 15 14 11 31 31 H 1.08994 * 109.62717 * 248.50866 * 15 14 11 32 32 H 1.09001 * 109.48915 * 173.79368 * 16 15 14 33 33 H 1.08998 * 109.49368 * 293.86955 * 16 15 14 34 34 H 1.09003 * 110.01324 * 59.99532 * 18 17 16 35 35 H 1.09004 * 110.49013 * 335.77956 * 19 18 17 36 36 H 1.08999 * 110.49056 * 98.42727 * 19 18 17 37 37 H 1.09003 * 110.75500 * 279.62666 * 20 19 18 38 38 H 1.08997 * 110.75602 * 156.25424 * 20 19 18 39 39 H 1.09005 * 110.48234 * 203.38186 * 21 20 19 40 40 H 1.08999 * 110.48671 * 80.74241 * 21 20 19 41 41 H 1.09006 * 110.03351 * 238.57137 * 22 18 17 42 42 H 1.08999 * 110.03011 * 359.95062 * 22 18 17 43 43 H 1.09000 * 109.49150 * 303.14778 * 23 17 16 44 44 H 1.08993 * 109.49189 * 183.06642 * 23 17 16 45 45 H 1.09004 * 109.62468 * 350.90760 * 24 14 11 46 46 H 1.08994 * 109.63401 * 111.49044 * 24 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 16 1.3382 -5.2330 -0.0013 12 8 0.6647 -5.4194 -1.2385 13 8 0.6639 -5.4200 1.2355 14 7 2.5204 -6.3927 -0.0005 15 6 3.0585 -6.9214 1.2621 16 6 3.0015 -8.4519 1.2125 17 7 3.6832 -8.9251 0.0004 18 6 3.8017 -10.3893 0.0006 19 6 4.6430 -10.8512 1.2083 20 6 5.4673 -12.0439 0.6631 21 6 5.8178 -11.5881 -0.7751 22 6 4.5486 -10.8579 -1.2605 23 6 3.0028 -8.4522 -1.2127 24 6 3.0599 -6.9216 -1.2624 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8896 28 1 2.8719 -3.6043 0.8894 29 1 2.8719 -3.6042 -0.8905 30 1 2.4575 -6.5594 2.0963 31 1 4.0920 -6.5971 1.3839 32 1 3.4967 -8.8630 2.0922 33 1 1.9612 -8.7768 1.1952 34 1 2.8117 -10.8437 0.0386 35 1 5.3042 -10.0510 1.5411 36 1 3.9953 -11.1757 2.0227 37 1 4.8657 -12.9527 0.6445 38 1 6.3719 -12.1902 1.2533 39 1 6.0274 -12.4504 -1.4081 40 1 6.6687 -10.9070 -0.7627 41 1 3.9214 -11.5404 -1.8340 42 1 4.8224 -9.9989 -1.8730 43 1 1.9625 -8.7770 -1.1963 44 1 3.4989 -8.8634 -2.0917 45 1 2.4597 -6.5599 -2.0974 46 1 4.0934 -6.5974 -1.3833 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111327354.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:01 Heat of formation + Delta-G solvation = -76.814879 kcal Electronic energy + Delta-G solvation = -25282.470312 eV Core-core repulsion = 21719.549168 eV Total energy + Delta-G solvation = -3562.921144 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.77642 -37.33267 -36.66591 -35.43591 -33.88628 -33.79289 -31.42376 -31.14892 -28.92104 -28.35754 -25.62534 -25.13478 -23.86715 -21.64303 -20.90906 -20.74812 -19.83543 -18.45709 -17.70687 -16.65803 -16.26985 -15.89428 -15.85016 -15.40756 -15.03591 -14.66330 -14.55011 -14.53569 -14.20317 -13.66164 -13.60585 -13.36743 -12.57728 -12.55275 -12.34879 -11.98252 -11.75229 -11.64325 -11.62011 -11.55900 -11.41128 -11.36009 -11.16821 -11.09874 -11.07730 -10.95824 -10.82612 -10.80309 -10.65955 -10.40780 -10.37232 -9.76104 -9.34515 -8.86715 -8.50230 -8.40445 -6.12235 -4.17783 0.75773 3.00578 3.26345 3.32503 3.35402 3.64284 4.24046 4.30298 4.35464 4.39449 4.56027 4.59388 4.68037 4.98857 5.01921 5.10126 5.16940 5.22879 5.24357 5.25292 5.28515 5.35310 5.37105 5.44724 5.56073 5.57140 5.60853 5.62155 5.68044 5.75251 5.77897 5.80315 5.87592 5.92650 5.99836 6.06292 6.13452 6.50191 6.66195 6.88662 6.96275 7.30255 7.36248 7.80902 8.17961 8.85715 9.46963 10.98814 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.030401 B = 0.002715 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.786254 B =10308.923656 C =10499.487003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.587 4.587 11 S 2.590 3.410 12 O -0.965 6.965 13 O -0.965 6.965 14 N -1.009 6.009 15 C 0.123 3.877 16 C 0.044 3.956 17 N -0.529 5.529 18 C 0.079 3.921 19 C -0.118 4.118 20 C -0.124 4.124 21 C -0.120 4.120 22 C -0.122 4.122 23 C 0.040 3.960 24 C 0.123 3.877 25 H 0.265 0.735 26 H 0.033 0.967 27 H 0.033 0.967 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.038 0.962 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.038 0.962 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.448 -23.173 -0.045 25.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.721 4.721 11 S 2.689 3.311 12 O -0.956 6.956 13 O -0.956 6.956 14 N -0.846 5.846 15 C -0.003 4.003 16 C -0.086 4.086 17 N -0.254 5.254 18 C -0.030 4.030 19 C -0.155 4.155 20 C -0.162 4.162 21 C -0.158 4.158 22 C -0.160 4.160 23 C -0.089 4.089 24 C -0.003 4.003 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.116 0.884 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.057 0.943 44 H 0.106 0.894 45 H 0.116 0.884 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.802 -23.066 -0.045 25.470 hybrid contribution 0.174 0.902 -0.011 0.919 sum 10.976 -22.163 -0.056 24.732 Atomic orbital electron populations 1.69954 1.06128 1.27197 1.49618 1.25074 0.94976 0.99561 0.94913 0.86464 0.79713 0.82832 0.78240 1.20456 1.21005 1.19748 1.21008 0.93072 0.89761 1.52082 0.92030 1.18966 0.92714 0.90643 0.98805 1.30479 1.13597 1.17961 1.10056 1.05694 0.74866 0.76477 0.74053 1.93520 1.71397 1.85270 1.45380 1.93522 1.71381 1.85260 1.45407 1.58016 1.59001 1.56134 1.11413 1.21493 1.00008 0.92975 0.85790 1.22427 0.97183 0.95723 0.93226 1.62077 1.51577 1.09612 1.02179 1.22310 0.97637 0.87113 0.95901 1.22453 0.98471 0.98032 0.96584 1.22465 0.99669 0.97734 0.96316 1.22298 0.97792 0.99562 0.96108 1.22292 0.96620 1.00174 0.96918 1.22493 0.97228 0.95735 0.93443 1.21491 0.99991 0.92959 0.85818 0.92529 0.94906 0.94905 0.86252 0.86265 0.88441 0.90821 0.89600 0.94332 0.94105 0.90191 0.91976 0.91754 0.91523 0.91967 0.91378 0.91988 0.90372 0.94327 0.89369 0.88449 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.52 -14.46 9.11 -34.44 -0.31 -14.78 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 10 C -0.59 -11.38 6.12 37.16 0.23 -11.15 16 11 S 2.59 47.28 5.47 -107.50 -0.59 46.69 16 12 O -0.97 -20.08 16.61 -57.54 -0.96 -21.04 16 13 O -0.97 -20.09 16.60 -57.54 -0.96 -21.05 16 14 N -1.01 -14.07 3.26 -113.23 -0.37 -14.44 16 15 C 0.12 1.47 6.62 -3.60 -0.02 1.45 16 16 C 0.04 0.47 5.45 -3.70 -0.02 0.45 16 17 N -0.53 -5.36 4.41 -225.01 -0.99 -6.35 16 18 C 0.08 0.68 2.67 -66.60 -0.18 0.50 16 19 C -0.12 -0.88 5.12 -25.07 -0.13 -1.01 16 20 C -0.12 -0.80 6.91 -24.74 -0.17 -0.97 16 21 C -0.12 -0.80 6.83 -25.08 -0.17 -0.97 16 22 C -0.12 -0.92 5.86 -25.62 -0.15 -1.07 16 23 C 0.04 0.43 5.34 -3.70 -0.02 0.41 16 24 C 0.12 1.47 6.62 -3.60 -0.02 1.45 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.03 0.89 8.14 -51.92 -0.42 0.47 16 27 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.12 2.09 8.14 -51.93 -0.42 1.67 16 29 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 30 H 0.10 1.21 6.87 -51.93 -0.36 0.86 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.09 0.76 6.81 -51.93 -0.35 0.40 16 33 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.65 7.86 -51.93 -0.41 0.24 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.62 6.20 -51.93 -0.32 0.30 16 43 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.09 0.77 5.95 -51.93 -0.31 0.46 16 45 H 0.10 1.21 6.87 -51.93 -0.36 0.85 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 366.32 15.07 5.52 5.52 Total: -1.00 -33.92 366.32 -11.82 -45.74 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -7.99 Total: -1.86 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: -1.21 Total: -23.58 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -0.63 Total: -46.70 kcal Atomic # 8 Polarization: -40.18 SS G_CDS: -1.91 Total: -42.09 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 47.28 SS G_CDS: -0.59 Total: 46.69 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.92 -11.82 -45.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111327354.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.074 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds