Wall clock time and date at job start Tue Mar 31 2020 10:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00071 * 2 1 4 4 H 1.48495 * 109.47485 * 270.00398 * 3 2 1 5 5 H 1.48503 * 109.46840 * 30.00411 * 3 2 1 6 6 H 1.48504 * 109.47220 * 150.00030 * 3 2 1 7 7 C 1.37880 * 120.00277 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00132 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99628 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46914 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.46961 * 180.02562 * 10 9 7 12 12 O 1.42095 * 110.54874 * 68.37725 * 11 10 9 13 13 O 1.42106 * 110.54096 * 291.61926 * 11 10 9 14 14 N 1.65598 * 104.45042 * 180.02562 * 11 10 9 15 15 C 1.47087 * 120.88550 * 89.99358 * 14 11 10 16 16 C 1.53242 * 108.51879 * 128.79426 * 15 14 11 17 17 N 1.46894 * 109.34141 * 53.83541 * 16 15 14 18 18 C 1.46897 * 111.00169 * 172.74129 * 17 16 15 19 19 C 1.54261 * 110.03257 * 298.55610 * 18 17 16 20 20 C 1.54896 * 104.19512 * 217.10429 * 19 18 17 21 21 C 1.54886 * 102.74572 * 37.93860 * 20 19 18 22 22 C 1.53872 * 110.03366 * 181.38546 * 18 17 16 23 23 C 1.46902 * 111.26931 * 296.89327 * 17 16 15 24 24 C 1.47080 * 120.88253 * 269.97843 * 14 11 10 25 25 H 0.97005 * 120.00112 * 359.97438 * 1 2 3 26 26 H 1.09008 * 109.46722 * 60.00611 * 9 7 2 27 27 H 1.08998 * 109.47624 * 300.00681 * 9 7 2 28 28 H 1.08997 * 109.47213 * 60.00269 * 10 9 7 29 29 H 1.08999 * 109.47082 * 300.00213 * 10 9 7 30 30 H 1.09000 * 109.62246 * 9.08749 * 15 14 11 31 31 H 1.08994 * 109.62717 * 248.50866 * 15 14 11 32 32 H 1.09001 * 109.48915 * 173.79368 * 16 15 14 33 33 H 1.08998 * 109.49368 * 293.86955 * 16 15 14 34 34 H 1.09003 * 110.01324 * 59.99532 * 18 17 16 35 35 H 1.09004 * 110.49013 * 335.77956 * 19 18 17 36 36 H 1.08999 * 110.49056 * 98.42727 * 19 18 17 37 37 H 1.09003 * 110.75500 * 279.62666 * 20 19 18 38 38 H 1.08997 * 110.75602 * 156.25424 * 20 19 18 39 39 H 1.09005 * 110.48234 * 203.38186 * 21 20 19 40 40 H 1.08999 * 110.48671 * 80.74241 * 21 20 19 41 41 H 1.09006 * 110.03351 * 238.57137 * 22 18 17 42 42 H 1.08999 * 110.03011 * 359.95062 * 22 18 17 43 43 H 1.09000 * 109.49150 * 303.14778 * 23 17 16 44 44 H 1.08993 * 109.49189 * 183.06642 * 23 17 16 45 45 H 1.09004 * 109.62468 * 350.90760 * 24 14 11 46 46 H 1.08994 * 109.63401 * 111.49044 * 24 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 16 1.3382 -5.2330 -0.0013 12 8 0.6647 -5.4194 -1.2385 13 8 0.6639 -5.4200 1.2355 14 7 2.5204 -6.3927 -0.0005 15 6 3.0585 -6.9214 1.2621 16 6 3.0015 -8.4519 1.2125 17 7 3.6832 -8.9251 0.0004 18 6 3.8017 -10.3893 0.0006 19 6 4.6430 -10.8512 1.2083 20 6 5.4673 -12.0439 0.6631 21 6 5.8178 -11.5881 -0.7751 22 6 4.5486 -10.8579 -1.2605 23 6 3.0028 -8.4522 -1.2127 24 6 3.0599 -6.9216 -1.2624 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8896 28 1 2.8719 -3.6043 0.8894 29 1 2.8719 -3.6042 -0.8905 30 1 2.4575 -6.5594 2.0963 31 1 4.0920 -6.5971 1.3839 32 1 3.4967 -8.8630 2.0922 33 1 1.9612 -8.7768 1.1952 34 1 2.8117 -10.8437 0.0386 35 1 5.3042 -10.0510 1.5411 36 1 3.9953 -11.1757 2.0227 37 1 4.8657 -12.9527 0.6445 38 1 6.3719 -12.1902 1.2533 39 1 6.0274 -12.4504 -1.4081 40 1 6.6687 -10.9070 -0.7627 41 1 3.9214 -11.5404 -1.8340 42 1 4.8224 -9.9989 -1.8730 43 1 1.9625 -8.7770 -1.1963 44 1 3.4989 -8.8634 -2.0917 45 1 2.4597 -6.5599 -2.0974 46 1 4.0934 -6.5974 -1.3833 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111327354.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:00 Heat of formation + Delta-G solvation = -100.609977 kcal Electronic energy + Delta-G solvation = -25283.502145 eV Core-core repulsion = 21719.549168 eV Total energy + Delta-G solvation = -3563.952977 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.55007 -38.25842 -38.12532 -37.02845 -35.90378 -34.67701 -33.13345 -32.31400 -29.51380 -29.12332 -27.58920 -26.02739 -24.75513 -23.54347 -21.92345 -21.29753 -20.55649 -19.75411 -19.13172 -18.45063 -17.29475 -17.12718 -17.05118 -16.56048 -16.41912 -15.86768 -15.82809 -15.49678 -15.08269 -14.97479 -14.57467 -14.44473 -14.16023 -13.75435 -13.63205 -13.52651 -13.22802 -13.01959 -12.93556 -12.80065 -12.63412 -12.48358 -12.28700 -12.23837 -12.13634 -11.96466 -11.86408 -11.76969 -11.69700 -11.59258 -11.52710 -11.33606 -11.15164 -10.65759 -10.03878 -9.27201 -8.26940 -6.41303 -0.73793 1.40528 1.42555 1.53744 1.70489 2.37576 2.80079 2.88749 3.06280 3.14656 3.59243 3.64654 3.79686 4.01300 4.03147 4.11566 4.14556 4.26772 4.30182 4.35893 4.43126 4.53850 4.61003 4.66615 4.70273 4.74066 4.74238 4.85225 4.87536 4.92980 5.00894 5.06676 5.12129 5.13421 5.25185 5.25976 5.27346 5.30233 5.35443 5.54810 5.60801 5.67284 6.05062 6.05993 6.20334 6.72397 7.29018 8.85377 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.030401 B = 0.002715 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.786254 B =10308.923656 C =10499.487003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.975 3.025 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.257 1.257 7 C -0.539 4.539 8 H 0.076 0.924 9 C 0.021 3.979 10 C -0.584 4.584 11 S 2.612 3.388 12 O -0.995 6.995 13 O -0.995 6.995 14 N -1.000 6.000 15 C 0.116 3.884 16 C 0.045 3.955 17 N -0.527 5.527 18 C 0.075 3.925 19 C -0.115 4.115 20 C -0.121 4.121 21 C -0.118 4.118 22 C -0.121 4.121 23 C 0.042 3.958 24 C 0.116 3.884 25 H 0.268 0.732 26 H 0.005 0.995 27 H 0.005 0.995 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.021 0.979 34 H 0.031 0.969 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.021 0.979 44 H 0.111 0.889 45 H 0.090 0.910 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.406 -24.018 -0.052 28.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.181 1.181 7 C -0.578 4.578 8 H 0.094 0.906 9 C -0.018 4.018 10 C -0.717 4.717 11 S 2.711 3.289 12 O -0.985 6.985 13 O -0.985 6.985 14 N -0.839 5.839 15 C -0.009 4.009 16 C -0.084 4.084 17 N -0.252 5.252 18 C -0.033 4.033 19 C -0.153 4.153 20 C -0.159 4.159 21 C -0.155 4.155 22 C -0.159 4.159 23 C -0.088 4.088 24 C -0.009 4.009 25 H 0.076 0.924 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.159 0.841 29 H 0.159 0.841 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.039 0.961 34 H 0.049 0.951 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.039 0.961 44 H 0.129 0.871 45 H 0.108 0.892 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 13.772 -23.915 -0.053 27.596 hybrid contribution -0.738 1.048 -0.010 1.282 sum 13.033 -22.866 -0.063 26.320 Atomic orbital electron populations 1.70103 1.08117 1.28363 1.50876 1.26143 0.95874 1.03968 0.94342 0.85292 0.78637 0.77527 0.78679 1.19530 1.20813 1.18098 1.21517 0.93988 0.90752 1.51536 0.90590 1.18823 0.93605 0.93183 0.96223 1.30370 1.12649 1.16423 1.12223 1.04720 0.75033 0.76444 0.72704 1.93475 1.72744 1.85703 1.46558 1.93477 1.72732 1.85694 1.46588 1.57665 1.58416 1.54590 1.13239 1.21762 1.00951 0.93826 0.84373 1.22433 0.96648 0.94800 0.94538 1.62136 1.50816 1.10619 1.01587 1.22409 0.97596 0.86025 0.97266 1.22437 0.98361 0.98373 0.96153 1.22464 0.99869 0.97356 0.96216 1.22289 0.97149 0.99760 0.96336 1.22288 0.97005 1.00277 0.96323 1.22508 0.96692 0.94810 0.94772 1.21762 1.00938 0.93816 0.84398 0.92366 0.97656 0.97653 0.84097 0.84089 0.89201 0.88404 0.87400 0.96071 0.95082 0.90474 0.91698 0.91387 0.90715 0.91052 0.91537 0.91575 0.90578 0.96079 0.87123 0.89196 0.88403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.37 13.29 21.45 0.28 -57.08 16 2 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 3 Si 0.98 43.44 29.54 68.60 2.03 45.47 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 7 C -0.54 -30.13 9.11 25.60 0.23 -29.90 16 8 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 9 C 0.02 1.09 4.98 29.85 0.15 1.24 16 10 C -0.58 -22.45 6.12 71.98 0.44 -22.01 16 11 S 2.61 96.35 5.47 -56.49 -0.31 96.04 16 12 O -0.99 -42.35 16.61 -127.65 -2.12 -44.47 16 13 O -0.99 -42.37 16.60 -127.65 -2.12 -44.49 16 14 N -1.00 -26.80 3.26 -512.14 -1.67 -28.47 16 15 C 0.12 2.58 6.62 86.35 0.57 3.15 16 16 C 0.05 0.90 5.45 86.39 0.47 1.37 16 17 N -0.53 -9.63 4.41 -865.80 -3.82 -13.45 16 18 C 0.08 1.16 2.67 45.64 0.12 1.28 16 19 C -0.12 -1.47 5.12 31.67 0.16 -1.31 16 20 C -0.12 -1.26 6.91 31.89 0.22 -1.04 16 21 C -0.12 -1.27 6.83 31.67 0.22 -1.05 16 22 C -0.12 -1.56 5.86 31.32 0.18 -1.37 16 23 C 0.04 0.82 5.34 86.38 0.46 1.28 16 24 C 0.12 2.57 6.62 86.35 0.57 3.14 16 25 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 26 H 0.01 0.29 8.14 -2.38 -0.02 0.28 16 27 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.14 4.75 8.14 -2.39 -0.02 4.73 16 29 H 0.14 4.74 8.14 -2.39 -0.02 4.72 16 30 H 0.09 2.16 6.87 -2.39 -0.02 2.14 16 31 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.11 1.66 6.81 -2.39 -0.02 1.65 16 33 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.08 1.05 7.86 -2.38 -0.02 1.03 16 36 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 42 H 0.08 1.01 6.20 -2.39 -0.01 1.00 16 43 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.11 1.69 5.95 -2.39 -0.01 1.68 16 45 H 0.09 2.16 6.87 -2.38 -0.02 2.14 16 46 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -74.32 366.32 -2.52 -76.85 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.94 Total: 14.63 kcal Atomic # 6 Polarization: -49.30 SS G_CDS: 4.26 Total: -45.03 kcal Atomic # 7 Polarization: -93.80 SS G_CDS: -5.21 Total: -99.00 kcal Atomic # 8 Polarization: -84.72 SS G_CDS: -4.24 Total: -88.95 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: 96.35 SS G_CDS: -0.31 Total: 96.04 kcal Total: -74.32 -2.52 -76.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111327354.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.762 kcal (2) G-P(sol) polarization free energy of solvation -74.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds