Wall clock time and date at job start Tue Mar 31 2020 11:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99743 * 2 1 4 4 H 1.48500 * 109.46936 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47075 * 300.00051 * 3 2 1 6 6 H 1.48503 * 109.47092 * 60.00105 * 3 2 1 7 7 C 1.37874 * 120.00551 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00379 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99660 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.46923 * 180.02562 * 9 7 2 11 11 C 1.46497 * 119.99936 * 270.00308 * 10 9 7 12 12 C 1.53002 * 109.47284 * 270.00021 * 11 10 9 13 13 C 1.53000 * 117.50219 * 243.62509 * 12 11 10 14 14 C 1.52997 * 60.00037 * 252.50624 * 13 12 11 15 15 C 1.34774 * 119.99662 * 90.00344 * 10 9 7 16 16 O 1.21278 * 120.00345 * 359.97438 * 15 10 9 17 17 C 1.50701 * 119.99680 * 179.97438 * 15 10 9 18 18 N 1.46500 * 109.46990 * 179.97438 * 17 15 10 19 19 C 1.34779 * 120.00008 * 180.02562 * 18 17 15 20 20 O 1.21550 * 120.00001 * 0.02562 * 19 18 17 21 21 C 1.47847 * 120.00150 * 180.02562 * 19 18 17 22 22 C 1.39575 * 120.14487 * 180.02562 * 21 19 18 23 23 C 1.37955 * 119.85263 * 180.23372 * 22 21 19 24 24 C 1.38361 * 120.14143 * 359.46851 * 23 22 21 25 25 C 1.38356 * 120.29591 * 0.55458 * 24 23 22 26 26 C 1.37958 * 120.14442 * 359.70615 * 25 24 23 27 27 H 0.97001 * 120.00168 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46973 * 60.00349 * 9 7 2 29 29 H 1.08991 * 109.47338 * 300.00513 * 9 7 2 30 30 H 1.09000 * 109.47425 * 29.99943 * 11 10 9 31 31 H 1.09000 * 109.47300 * 150.00154 * 11 10 9 32 32 H 1.09006 * 115.54790 * 29.32764 * 12 11 10 33 33 H 1.09000 * 117.49625 * 0.02562 * 13 12 11 34 34 H 1.09004 * 117.49953 * 145.01364 * 13 12 11 35 35 H 1.08992 * 117.49892 * 252.51017 * 14 13 12 36 36 H 1.09000 * 117.49561 * 107.48210 * 14 13 12 37 37 H 1.09000 * 109.47182 * 60.00483 * 17 15 10 38 38 H 1.09002 * 109.47219 * 300.00257 * 17 15 10 39 39 H 0.96996 * 120.00359 * 0.02562 * 18 17 15 40 40 H 1.08002 * 120.07104 * 359.95155 * 22 21 19 41 41 H 1.07998 * 119.92975 * 179.72529 * 23 22 21 42 42 H 1.08004 * 119.85537 * 180.27871 * 24 23 22 43 43 H 1.08006 * 119.92842 * 179.72127 * 25 24 23 44 44 H 1.07997 * 120.07488 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2033 -3.6126 -0.0005 11 6 2.6793 -4.1693 -1.2692 12 6 1.7487 -5.3005 -1.7110 13 6 2.3407 -6.7086 -1.7994 14 6 2.0092 -5.9365 -3.0780 15 6 2.6411 -4.1248 1.1667 16 8 2.2473 -3.6636 2.2170 17 6 3.6200 -5.2705 1.1667 18 7 3.9379 -5.6412 2.5479 19 6 4.7992 -6.6482 2.7942 20 8 5.3126 -7.2485 1.8704 21 6 5.1195 -7.0227 4.1882 22 6 6.0114 -8.0647 4.4467 23 6 6.3023 -8.4123 5.7496 24 6 5.7205 -7.7232 6.7989 25 6 4.8352 -6.6896 6.5496 26 6 4.5316 -6.3355 5.2513 27 1 -0.4850 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8895 30 1 2.6871 -3.3876 -2.0289 31 1 3.6888 -4.5592 -1.1389 32 1 0.7118 -5.2096 -1.3876 33 1 3.3931 -6.8291 -1.5423 34 1 1.6933 -7.5444 -1.5338 35 1 1.1437 -6.2643 -3.6536 36 1 2.8436 -5.5490 -3.6625 37 1 4.5327 -4.9687 0.6528 38 1 3.1794 -6.1249 0.6530 39 1 3.5285 -5.1620 3.2852 40 1 6.4693 -8.6007 3.6284 41 1 6.9888 -9.2213 5.9511 42 1 5.9550 -7.9963 7.8172 43 1 4.3810 -6.1587 7.3732 44 1 3.8407 -5.5282 5.0580 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117252785.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:40 Heat of formation + Delta-G solvation = -19.129009 kcal Electronic energy + Delta-G solvation = -25718.304206 eV Core-core repulsion = 22022.440557 eV Total energy + Delta-G solvation = -3695.863649 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.35588 -39.33128 -38.20437 -37.23601 -34.81192 -34.20533 -32.61558 -31.55242 -31.13606 -28.71354 -27.30512 -25.89003 -23.87249 -22.81902 -22.38405 -22.27635 -20.72782 -20.44723 -19.07236 -18.07274 -16.70064 -16.55918 -16.25589 -15.91631 -15.61733 -15.40667 -14.96844 -14.68221 -14.59167 -14.47732 -14.11516 -13.80323 -13.75620 -13.30848 -12.92418 -12.75176 -12.52679 -12.15345 -11.97731 -11.88839 -11.48260 -11.41892 -11.30947 -11.27522 -10.91658 -10.67988 -10.37449 -10.15011 -10.03224 -9.85682 -9.66697 -9.28891 -9.21964 -9.13969 -9.00288 -8.48830 -7.82096 -6.09790 -4.14701 0.66739 1.14033 2.78058 3.02408 3.18195 3.26757 3.34708 3.38904 3.71692 3.76108 3.99080 4.40389 4.56698 4.61741 4.71085 4.77564 4.92376 4.95648 5.03452 5.14867 5.23953 5.25380 5.27266 5.40217 5.52265 5.53257 5.62277 5.72108 5.74997 5.85348 5.98232 6.05058 6.10226 6.16850 6.19929 6.20217 6.29216 6.44407 6.64623 6.95097 7.34191 7.41368 7.52885 7.85917 8.13215 8.16144 8.27499 8.75809 8.93158 9.50629 10.98386 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011681 B = 0.003422 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.516499 B = 8180.082662 C =10034.696371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.246 3.754 10 N -0.586 5.586 11 C 0.138 3.862 12 C -0.168 4.168 13 C -0.186 4.186 14 C -0.174 4.174 15 C 0.503 3.497 16 O -0.541 6.541 17 C 0.097 3.903 18 N -0.708 5.708 19 C 0.558 3.442 20 O -0.543 6.543 21 C -0.131 4.131 22 C -0.061 4.061 23 C -0.131 4.131 24 C -0.097 4.097 25 C -0.127 4.127 26 C -0.084 4.084 27 H 0.263 0.737 28 H 0.036 0.964 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.411 0.589 40 H 0.136 0.864 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.130 0.870 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.912 -16.332 5.760 19.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.567 4.567 8 H 0.077 0.923 9 C 0.127 3.873 10 N -0.316 5.316 11 C 0.013 3.987 12 C -0.187 4.187 13 C -0.223 4.223 14 C -0.211 4.211 15 C 0.288 3.712 16 O -0.419 6.419 17 C -0.030 4.030 18 N -0.363 5.363 19 C 0.346 3.654 20 O -0.422 6.422 21 C -0.134 4.134 22 C -0.080 4.080 23 C -0.149 4.149 24 C -0.115 4.115 25 C -0.145 4.145 26 C -0.103 4.103 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.127 0.873 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.251 0.749 40 H 0.154 0.846 41 H 0.146 0.854 42 H 0.144 0.856 43 H 0.147 0.853 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.862 -16.325 5.622 19.407 hybrid contribution 0.146 1.229 0.213 1.256 sum 9.007 -15.096 5.835 18.522 Atomic orbital electron populations 1.69937 1.05992 1.26985 1.50328 1.24926 0.94874 0.99239 0.94986 0.86443 0.80013 0.83347 0.77625 1.19785 1.20928 1.20871 1.21447 0.93406 0.90569 1.51230 0.92346 1.19351 0.87364 0.81920 0.98653 1.48134 1.45285 1.34455 1.03756 1.21115 0.95267 0.94952 0.87328 1.22913 1.01382 0.93893 1.00539 1.23091 1.01747 0.95066 1.02380 1.22889 1.03366 1.04232 0.90659 1.20146 0.82458 0.83774 0.84779 1.90652 1.58642 1.61713 1.30868 1.21271 0.99571 0.98078 0.84093 1.45677 1.45976 1.35484 1.09138 1.18238 0.78794 0.79669 0.88741 1.90751 1.52515 1.53352 1.45596 1.19950 1.01308 0.99549 0.92641 1.21287 0.94724 0.94629 0.97348 1.21154 1.00873 1.00586 0.92326 1.21386 0.95719 0.95078 0.99361 1.21151 0.98720 0.97989 0.96666 1.21481 0.97932 0.98353 0.92485 0.92717 0.94635 0.93745 0.89036 0.91214 0.87300 0.88605 0.89137 0.88955 0.88682 0.88922 0.88429 0.74940 0.84629 0.85379 0.85639 0.85255 0.85098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 13.29 55.43 0.74 -25.25 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.53 -14.52 9.39 -34.44 -0.32 -14.84 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.25 6.17 5.16 -5.19 -0.03 6.14 16 10 N -0.59 -11.79 2.46 -175.06 -0.43 -12.22 16 11 C 0.14 2.17 5.49 -4.04 -0.02 2.14 16 12 C -0.17 -2.31 5.95 -90.62 -0.54 -2.85 16 13 C -0.19 -2.17 9.18 -26.73 -0.25 -2.41 16 14 C -0.17 -1.97 10.25 -26.73 -0.27 -2.24 16 15 C 0.50 9.94 7.74 -10.99 -0.09 9.86 16 16 O -0.54 -12.54 15.25 5.56 0.08 -12.46 16 17 C 0.10 1.53 4.71 -5.19 -0.02 1.51 16 18 N -0.71 -10.68 5.48 -62.43 -0.34 -11.02 16 19 C 0.56 8.32 7.77 -12.33 -0.10 8.22 16 20 O -0.54 -9.32 16.35 5.32 0.09 -9.23 16 21 C -0.13 -1.64 5.87 -104.97 -0.62 -2.26 16 22 C -0.06 -0.67 9.60 -39.19 -0.38 -1.04 16 23 C -0.13 -1.13 10.03 -39.64 -0.40 -1.53 16 24 C -0.10 -0.78 10.04 -39.49 -0.40 -1.18 16 25 C -0.13 -1.14 10.03 -39.64 -0.40 -1.54 16 26 C -0.08 -0.91 9.54 -39.18 -0.37 -1.28 16 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 29 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 30 H 0.09 1.49 8.07 -51.93 -0.42 1.08 16 31 H 0.07 0.95 6.17 -51.93 -0.32 0.63 16 32 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 33 H 0.10 1.09 7.87 -51.93 -0.41 0.68 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.09 1.40 7.40 -51.93 -0.38 1.01 16 38 H 0.10 1.43 6.84 -51.93 -0.36 1.08 16 39 H 0.41 6.09 5.47 -40.82 -0.22 5.86 16 40 H 0.14 1.45 7.65 -52.49 -0.40 1.05 16 41 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 43 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 44 H 0.13 1.35 6.41 -52.49 -0.34 1.01 16 LS Contribution 374.13 15.07 5.64 5.64 Total: -1.00 -32.85 374.13 -9.70 -42.55 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.16 Total: 7.20 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -4.29 Total: -1.68 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: -0.04 Total: -48.48 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: 0.17 Total: -21.69 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.85 -9.70 -42.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117252785.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.420 kcal (2) G-P(sol) polarization free energy of solvation -32.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds