Wall clock time and date at job start Tue Mar 31 2020 11:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99743 * 2 1 4 4 H 1.48500 * 109.46936 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47075 * 300.00051 * 3 2 1 6 6 H 1.48503 * 109.47092 * 60.00105 * 3 2 1 7 7 C 1.37874 * 120.00551 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00379 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99660 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.46923 * 180.02562 * 9 7 2 11 11 C 1.46497 * 119.99936 * 270.00308 * 10 9 7 12 12 C 1.53002 * 109.47284 * 270.00021 * 11 10 9 13 13 C 1.53000 * 117.50219 * 243.62509 * 12 11 10 14 14 C 1.52997 * 60.00037 * 252.50624 * 13 12 11 15 15 C 1.34774 * 119.99662 * 90.00344 * 10 9 7 16 16 O 1.21278 * 120.00345 * 359.97438 * 15 10 9 17 17 C 1.50701 * 119.99680 * 179.97438 * 15 10 9 18 18 N 1.46500 * 109.46990 * 179.97438 * 17 15 10 19 19 C 1.34779 * 120.00008 * 180.02562 * 18 17 15 20 20 O 1.21550 * 120.00001 * 0.02562 * 19 18 17 21 21 C 1.47847 * 120.00150 * 180.02562 * 19 18 17 22 22 C 1.39575 * 120.14487 * 180.02562 * 21 19 18 23 23 C 1.37955 * 119.85263 * 180.23372 * 22 21 19 24 24 C 1.38361 * 120.14143 * 359.46851 * 23 22 21 25 25 C 1.38356 * 120.29591 * 0.55458 * 24 23 22 26 26 C 1.37958 * 120.14442 * 359.70615 * 25 24 23 27 27 H 0.97001 * 120.00168 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46973 * 60.00349 * 9 7 2 29 29 H 1.08991 * 109.47338 * 300.00513 * 9 7 2 30 30 H 1.09000 * 109.47425 * 29.99943 * 11 10 9 31 31 H 1.09000 * 109.47300 * 150.00154 * 11 10 9 32 32 H 1.09006 * 115.54790 * 29.32764 * 12 11 10 33 33 H 1.09000 * 117.49625 * 0.02562 * 13 12 11 34 34 H 1.09004 * 117.49953 * 145.01364 * 13 12 11 35 35 H 1.08992 * 117.49892 * 252.51017 * 14 13 12 36 36 H 1.09000 * 117.49561 * 107.48210 * 14 13 12 37 37 H 1.09000 * 109.47182 * 60.00483 * 17 15 10 38 38 H 1.09002 * 109.47219 * 300.00257 * 17 15 10 39 39 H 0.96996 * 120.00359 * 0.02562 * 18 17 15 40 40 H 1.08002 * 120.07104 * 359.95155 * 22 21 19 41 41 H 1.07998 * 119.92975 * 179.72529 * 23 22 21 42 42 H 1.08004 * 119.85537 * 180.27871 * 24 23 22 43 43 H 1.08006 * 119.92842 * 179.72127 * 25 24 23 44 44 H 1.07997 * 120.07488 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2033 -3.6126 -0.0005 11 6 2.6793 -4.1693 -1.2692 12 6 1.7487 -5.3005 -1.7110 13 6 2.3407 -6.7086 -1.7994 14 6 2.0092 -5.9365 -3.0780 15 6 2.6411 -4.1248 1.1667 16 8 2.2473 -3.6636 2.2170 17 6 3.6200 -5.2705 1.1667 18 7 3.9379 -5.6412 2.5479 19 6 4.7992 -6.6482 2.7942 20 8 5.3126 -7.2485 1.8704 21 6 5.1195 -7.0227 4.1882 22 6 6.0114 -8.0647 4.4467 23 6 6.3023 -8.4123 5.7496 24 6 5.7205 -7.7232 6.7989 25 6 4.8352 -6.6896 6.5496 26 6 4.5316 -6.3355 5.2513 27 1 -0.4850 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8895 30 1 2.6871 -3.3876 -2.0289 31 1 3.6888 -4.5592 -1.1389 32 1 0.7118 -5.2096 -1.3876 33 1 3.3931 -6.8291 -1.5423 34 1 1.6933 -7.5444 -1.5338 35 1 1.1437 -6.2643 -3.6536 36 1 2.8436 -5.5490 -3.6625 37 1 4.5327 -4.9687 0.6528 38 1 3.1794 -6.1249 0.6530 39 1 3.5285 -5.1620 3.2852 40 1 6.4693 -8.6007 3.6284 41 1 6.9888 -9.2213 5.9511 42 1 5.9550 -7.9963 7.8172 43 1 4.3810 -6.1587 7.3732 44 1 3.8407 -5.5282 5.0580 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117252785.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:39 Heat of formation + Delta-G solvation = -38.831794 kcal Electronic energy + Delta-G solvation = -25719.158583 eV Core-core repulsion = 22022.440557 eV Total energy + Delta-G solvation = -3696.718025 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.54592 -40.67671 -39.17155 -38.44807 -36.35490 -35.58956 -34.63220 -32.44295 -31.87917 -30.39987 -28.71282 -27.47386 -25.16458 -24.20044 -23.34836 -23.19831 -21.92063 -21.52835 -20.42709 -19.28574 -18.62582 -17.93091 -17.55990 -17.02984 -16.99053 -16.74829 -16.22382 -15.95997 -15.88088 -15.45930 -15.40993 -14.95691 -14.67756 -14.48391 -14.37194 -14.09602 -13.82377 -13.68964 -13.40666 -13.23149 -12.91056 -12.61788 -12.60530 -12.58288 -12.30092 -12.25100 -12.02468 -11.72775 -11.28369 -11.19287 -11.03116 -10.69661 -10.65356 -10.39230 -9.95989 -9.91437 -9.55102 -8.23770 -6.38007 -0.16491 0.41001 1.36828 1.38588 1.50004 1.59107 1.76537 1.79032 2.31303 2.43367 2.89008 2.92325 3.06622 3.39866 3.63742 3.84876 3.90563 3.99933 4.02173 4.12409 4.17584 4.25309 4.26767 4.34876 4.46760 4.52806 4.68284 4.78705 4.83730 4.84857 4.94555 5.05818 5.05857 5.11550 5.21187 5.29328 5.31849 5.35178 5.44336 5.50312 5.51775 5.77429 5.94789 6.03476 6.34335 6.57555 6.71461 7.00224 7.16684 7.34984 8.83811 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011681 B = 0.003422 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.516499 B = 8180.082662 C =10034.696371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.271 1.271 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.054 0.946 9 C 0.264 3.736 10 N -0.589 5.589 11 C 0.137 3.863 12 C -0.190 4.190 13 C -0.173 4.173 14 C -0.156 4.156 15 C 0.498 3.502 16 O -0.582 6.582 17 C 0.112 3.888 18 N -0.711 5.711 19 C 0.559 3.441 20 O -0.570 6.570 21 C -0.157 4.157 22 C -0.073 4.073 23 C -0.128 4.128 24 C -0.088 4.088 25 C -0.130 4.130 26 C -0.095 4.095 27 H 0.267 0.733 28 H 0.025 0.975 29 H 0.003 0.997 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.412 0.588 40 H 0.131 0.869 41 H 0.158 0.842 42 H 0.160 0.840 43 H 0.151 0.849 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.938 -17.478 6.353 21.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.189 4.189 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.196 1.196 6 H -0.207 1.207 7 C -0.581 4.581 8 H 0.072 0.928 9 C 0.143 3.857 10 N -0.319 5.319 11 C 0.015 3.985 12 C -0.210 4.210 13 C -0.210 4.210 14 C -0.194 4.194 15 C 0.286 3.714 16 O -0.463 6.463 17 C -0.015 4.015 18 N -0.365 5.365 19 C 0.349 3.651 20 O -0.451 6.451 21 C -0.160 4.160 22 C -0.092 4.092 23 C -0.145 4.145 24 C -0.105 4.105 25 C -0.148 4.148 26 C -0.114 4.114 27 H 0.076 0.924 28 H 0.043 0.957 29 H 0.021 0.979 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.122 0.878 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.130 0.870 39 H 0.251 0.749 40 H 0.149 0.851 41 H 0.175 0.825 42 H 0.178 0.822 43 H 0.169 0.831 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.903 -17.500 6.190 21.528 hybrid contribution -0.501 1.521 0.094 1.604 sum 10.402 -15.979 6.284 20.075 Atomic orbital electron populations 1.70050 1.07509 1.28111 1.50969 1.25813 0.95753 1.02919 0.94419 0.85385 0.78776 0.78808 0.77940 1.19186 1.19575 1.20712 1.21710 0.93309 0.91813 1.51271 0.92756 1.18784 0.87697 0.83226 0.96021 1.48070 1.44480 1.33496 1.05813 1.21319 0.96942 0.95315 0.84973 1.22663 0.99948 0.94771 1.03594 1.23153 1.02109 0.93608 1.02130 1.23014 1.04099 1.02392 0.89865 1.20805 0.82458 0.84262 0.83883 1.90622 1.60177 1.63225 1.32314 1.21135 0.98681 0.96563 0.85081 1.45728 1.46270 1.35797 1.08746 1.18645 0.77915 0.78854 0.89735 1.90718 1.53546 1.54212 1.46654 1.19877 1.03354 1.01329 0.91422 1.21411 0.94731 0.94429 0.98606 1.21506 1.00771 1.00999 0.91272 1.21827 0.94094 0.93724 1.00900 1.21480 0.98737 0.98325 0.96283 1.21561 0.98166 0.98453 0.93218 0.92385 0.95672 0.97936 0.89920 0.88629 0.89488 0.87790 0.88406 0.87865 0.87275 0.87662 0.86970 0.74876 0.85062 0.82475 0.82229 0.83082 0.85504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.26 13.29 21.45 0.28 -54.97 16 2 C 0.01 0.58 5.46 84.65 0.46 1.04 16 3 Si 0.97 44.40 29.54 68.60 2.03 46.43 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 5 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 7 C -0.54 -30.71 9.39 25.60 0.24 -30.47 16 8 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 9 C 0.26 13.92 5.16 85.63 0.44 14.36 16 10 N -0.59 -24.55 2.46 -826.15 -2.03 -26.57 16 11 C 0.14 4.31 5.49 86.38 0.47 4.79 16 12 C -0.19 -5.18 5.95 -10.79 -0.06 -5.24 16 13 C -0.17 -3.71 9.18 30.59 0.28 -3.43 16 14 C -0.16 -3.23 10.25 30.59 0.31 -2.91 16 15 C 0.50 20.34 7.74 87.66 0.68 21.02 16 16 O -0.58 -28.35 15.25 -3.02 -0.05 -28.39 16 17 C 0.11 3.54 4.71 85.63 0.40 3.94 16 18 N -0.71 -21.79 5.48 -469.70 -2.57 -24.36 16 19 C 0.56 16.78 7.77 86.79 0.67 17.45 16 20 O -0.57 -19.52 16.35 -3.87 -0.06 -19.59 16 21 C -0.16 -3.88 5.87 -20.09 -0.12 -4.00 16 22 C -0.07 -1.52 9.60 22.53 0.22 -1.31 16 23 C -0.13 -1.85 10.03 22.23 0.22 -1.63 16 24 C -0.09 -1.12 10.04 22.33 0.22 -0.89 16 25 C -0.13 -2.06 10.03 22.23 0.22 -1.84 16 26 C -0.10 -2.03 9.54 22.53 0.21 -1.81 16 27 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 28 H 0.03 1.36 8.07 -2.39 -0.02 1.34 16 29 H 0.00 0.15 7.42 -2.39 -0.02 0.14 16 30 H 0.08 2.72 8.07 -2.39 -0.02 2.70 16 31 H 0.10 2.48 6.17 -2.39 -0.01 2.47 16 32 H 0.09 2.76 8.14 -2.38 -0.02 2.74 16 33 H 0.10 2.10 7.87 -2.39 -0.02 2.08 16 34 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.11 3.08 7.40 -2.39 -0.02 3.06 16 38 H 0.11 3.22 6.84 -2.39 -0.02 3.20 16 39 H 0.41 12.67 5.47 -92.71 -0.51 12.16 16 40 H 0.13 2.77 7.65 -2.91 -0.02 2.75 16 41 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 42 H 0.16 0.97 8.06 -2.91 -0.02 0.94 16 43 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 44 H 0.13 2.70 6.41 -2.91 -0.02 2.68 16 Total: -1.00 -73.64 374.13 3.00 -70.64 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: 0.51 Total: 27.75 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 4.89 Total: 9.07 kcal Atomic # 7 Polarization: -101.59 SS G_CDS: -4.32 Total: -105.91 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: -0.11 Total: -47.98 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -73.64 3.00 -70.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117252785.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.811 kcal (2) G-P(sol) polarization free energy of solvation -73.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds