Wall clock time and date at job start Tue Mar 31 2020 11:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86802 * 120.00165 * 2 1 4 4 H 1.48497 * 109.47094 * 269.99792 * 3 2 1 5 5 H 1.48505 * 109.46813 * 29.99631 * 3 2 1 6 6 H 1.48500 * 109.47571 * 149.99614 * 3 2 1 7 7 C 1.39891 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00756 * 184.54335 * 7 2 1 9 9 C 1.41163 * 119.99760 * 4.55004 * 7 2 1 10 10 C 1.40872 * 120.16172 * 144.89646 * 9 7 2 11 11 C 1.36376 * 119.82407 * 179.71589 * 10 9 7 12 12 C 1.39481 * 120.16822 * 0.55922 * 11 10 9 13 13 N 1.39244 * 119.83011 * 179.73618 * 12 11 10 14 14 C 1.34775 * 119.99997 * 35.22356 * 13 12 11 15 15 O 1.21583 * 120.00055 * 355.64465 * 14 13 12 16 16 N 1.34781 * 119.99697 * 175.64091 * 14 13 12 17 17 C 1.47126 * 121.04296 * 185.06711 * 16 14 13 18 18 C 1.52803 * 108.93632 * 232.14902 * 17 16 14 19 19 O 1.43096 * 109.41887 * 306.15232 * 18 17 16 20 20 C 1.42581 * 113.96073 * 59.98044 * 19 18 17 21 21 C 1.53379 * 113.66096 * 72.58262 * 20 19 18 22 22 C 1.53851 * 86.95915 * 89.64280 * 21 20 19 23 23 C 1.53346 * 113.71057 * 170.65012 * 20 19 18 24 24 C 1.47321 * 121.04644 * 5.35051 * 16 14 13 25 25 C 1.39478 * 120.33425 * 359.71680 * 12 11 10 26 26 C 1.36372 * 120.16704 * 359.97438 * 25 12 11 27 27 H 0.97000 * 120.00210 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.08724 * 359.97438 * 10 9 7 29 29 H 1.08001 * 119.91480 * 180.28143 * 11 10 9 30 30 H 0.97002 * 119.99418 * 215.22018 * 13 12 11 31 31 H 1.08997 * 109.59503 * 351.96510 * 17 16 14 32 32 H 1.09000 * 109.59929 * 112.43028 * 17 16 14 33 33 H 1.09004 * 109.56206 * 186.10496 * 18 17 16 34 34 H 1.09003 * 109.37727 * 66.08214 * 18 17 16 35 35 H 1.09001 * 113.62797 * 204.15607 * 21 20 19 36 36 H 1.09000 * 113.63697 * 335.12187 * 21 20 19 37 37 H 1.09002 * 113.60417 * 270.55542 * 22 21 20 38 38 H 1.09005 * 113.59954 * 139.68580 * 22 21 20 39 39 H 1.09003 * 113.63222 * 24.92212 * 23 20 19 40 40 H 1.08999 * 113.63136 * 155.78911 * 23 20 19 41 41 H 1.09001 * 109.74914 * 251.10214 * 24 16 14 42 42 H 1.09002 * 109.74770 * 11.77343 * 24 16 14 43 43 H 1.07999 * 119.91515 * 179.97438 * 25 12 11 44 44 H 1.08008 * 120.08710 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4904 2.0464 -1.4000 5 1 1.4402 2.6527 0.7000 6 1 3.5403 1.4403 0.7001 7 6 2.0083 -1.2115 0.0005 8 1 3.0858 -1.2130 0.0746 9 6 1.3058 -2.4321 -0.0959 10 6 1.8633 -3.5156 -0.8027 11 6 1.1812 -4.6936 -0.8866 12 6 -0.0703 -4.8233 -0.2847 13 7 -0.7630 -6.0275 -0.3795 14 6 -0.0894 -7.1949 -0.3705 15 8 1.1263 -7.1952 -0.3597 16 7 -0.7637 -8.3619 -0.3736 17 6 -0.0570 -9.6467 -0.2527 18 6 -0.4957 -10.5632 -1.3940 19 8 -1.9231 -10.6635 -1.4018 20 6 -2.5902 -9.4162 -1.5816 21 6 -2.4866 -8.8628 -3.0083 22 6 -3.7755 -9.6442 -3.3172 23 6 -4.0995 -9.5524 -1.8160 24 6 -2.2308 -8.3915 -0.5042 25 6 -0.6313 -3.7531 0.4119 26 6 0.0416 -2.5710 0.5097 27 1 -0.4850 0.8400 -0.0004 28 1 2.8301 -3.4151 -1.2734 29 1 1.6093 -5.5267 -1.4243 30 1 -1.7303 -6.0262 -0.4519 31 1 1.0184 -9.4795 -0.3126 32 1 -0.3044 -10.1117 0.7016 33 1 -0.0623 -11.5535 -1.2539 34 1 -0.1551 -10.1480 -2.3425 35 1 -2.6068 -7.7811 -3.0671 36 1 -1.6153 -9.2236 -3.5548 37 1 -3.5964 -10.6620 -3.6637 38 1 -4.4761 -9.0981 -3.9490 39 1 -4.5249 -10.4675 -1.4040 40 1 -4.6661 -8.6620 -1.5434 41 1 -2.6793 -8.6829 0.4455 42 1 -2.5944 -7.4062 -0.7961 43 1 -1.6010 -3.8608 0.8749 44 1 -0.3942 -1.7429 1.0490 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157399498.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:42 Heat of formation + Delta-G solvation = -10.292597 kcal Electronic energy + Delta-G solvation = -26412.470078 eV Core-core repulsion = 22716.989605 eV Total energy + Delta-G solvation = -3695.480473 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.04838 -39.54688 -37.49238 -36.41668 -34.75098 -34.46846 -32.85605 -30.41660 -29.52992 -28.85622 -27.47203 -26.13756 -24.95740 -23.86735 -22.67402 -21.36427 -20.70016 -19.62339 -19.20350 -18.11564 -17.27305 -16.94205 -16.28200 -16.14725 -15.43248 -15.19897 -15.05167 -14.75204 -14.53295 -14.14086 -13.94093 -13.66516 -13.43478 -12.97451 -12.67707 -12.62147 -12.28079 -12.02447 -11.76639 -11.72980 -11.40735 -11.34886 -11.15300 -11.14170 -11.08677 -10.92239 -10.53210 -10.49571 -10.11819 -10.03202 -9.80257 -9.44750 -9.16775 -8.77956 -8.49151 -7.52475 -6.83264 -6.59897 -4.31350 2.60601 2.78054 3.10148 3.10898 3.15063 3.15923 3.30036 3.60607 3.99915 4.10245 4.25621 4.35612 4.42367 4.54806 4.72745 4.80670 4.89501 4.94006 5.08936 5.24099 5.37224 5.38258 5.46988 5.54522 5.64517 5.66746 5.68229 5.80293 5.88056 5.99840 6.19301 6.33851 6.44399 6.76553 6.83456 6.93747 7.04773 7.14880 7.26198 7.37930 7.67385 7.85747 7.95685 8.11046 8.32042 8.40103 8.66100 8.91390 8.95748 9.06982 10.31738 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.027846 B = 0.002755 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.291236 B =10160.669198 C =10671.298123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.070 3.930 3 Si 0.915 3.085 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.462 4.462 8 H 0.075 0.925 9 C 0.099 3.901 10 C -0.204 4.204 11 C -0.086 4.086 12 C 0.022 3.978 13 N -0.666 5.666 14 C 0.702 3.298 15 O -0.575 6.575 16 N -0.636 5.636 17 C 0.097 3.903 18 C 0.047 3.953 19 O -0.354 6.354 20 C 0.080 3.920 21 C -0.161 4.161 22 C -0.134 4.134 23 C -0.122 4.122 24 C 0.099 3.901 25 C -0.122 4.122 26 C -0.140 4.140 27 H 0.277 0.723 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.390 0.610 31 H 0.104 0.896 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.216 -16.862 -3.234 19.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.144 4.144 3 Si 0.740 3.260 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.493 4.493 8 H 0.093 0.907 9 C 0.096 3.904 10 C -0.224 4.224 11 C -0.106 4.106 12 C -0.071 4.071 13 N -0.313 5.313 14 C 0.405 3.595 15 O -0.452 6.452 16 N -0.376 5.376 17 C -0.027 4.027 18 C -0.030 4.030 19 O -0.273 6.273 20 C 0.039 3.961 21 C -0.199 4.199 22 C -0.171 4.171 23 C -0.160 4.160 24 C -0.025 4.025 25 C -0.143 4.143 26 C -0.160 4.160 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.126 0.874 30 H 0.225 0.775 31 H 0.122 0.878 32 H 0.088 0.912 33 H 0.125 0.875 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.591 -16.858 -3.176 19.185 hybrid contribution -0.064 0.982 -0.105 0.990 sum -8.655 -15.875 -3.280 18.377 Atomic orbital electron populations 1.69763 1.07231 1.28575 1.38693 1.25854 0.94940 1.01078 0.92567 0.86208 0.80179 0.80559 0.79057 1.19612 1.20374 1.18745 1.19490 0.94742 0.90214 1.44891 0.90656 1.17714 0.92179 0.91957 0.88512 1.20833 1.01197 0.94728 1.05611 1.20423 0.94233 0.96975 0.99004 1.17093 0.96269 0.84605 1.09085 1.42261 1.09070 1.03757 1.76181 1.15862 0.85372 0.80081 0.78227 1.90893 1.11320 1.85474 1.57520 1.47286 1.06076 1.05119 1.79134 1.21953 0.99471 0.82686 0.98562 1.22956 0.81060 1.00699 0.98330 1.87896 1.18438 1.27627 1.93322 1.22576 0.94375 0.85256 0.93903 1.23463 0.99035 1.00830 0.96542 1.22787 0.97310 1.00913 0.96092 1.22927 0.92842 1.03378 0.96807 1.22165 0.81360 0.99701 0.99284 1.20295 0.99320 0.94188 1.00493 1.21186 0.97050 0.95724 1.02005 0.91248 0.88637 0.87395 0.77499 0.87752 0.91158 0.87529 0.92453 0.89139 0.90966 0.89833 0.91089 0.90178 0.88444 0.90738 0.89408 0.89231 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.10 10.59 55.54 0.59 -20.51 16 2 C 0.07 1.78 5.42 -17.34 -0.09 1.68 16 3 Si 0.91 19.10 29.56 -169.99 -5.03 14.08 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.46 -12.45 9.02 -37.85 -0.34 -12.79 16 8 H 0.08 1.96 7.85 -52.48 -0.41 1.55 16 9 C 0.10 2.67 5.55 -106.80 -0.59 2.08 16 10 C -0.20 -5.22 9.74 -39.26 -0.38 -5.61 16 11 C -0.09 -2.10 8.61 -39.79 -0.34 -2.44 16 12 C 0.02 0.49 6.31 -83.57 -0.53 -0.03 16 13 N -0.67 -12.07 5.21 -14.10 -0.07 -12.14 16 14 C 0.70 12.81 8.15 -86.92 -0.71 12.10 16 15 O -0.58 -12.73 13.22 5.29 0.07 -12.66 16 16 N -0.64 -8.75 3.03 -178.39 -0.54 -9.29 16 17 C 0.10 1.14 6.58 -3.80 -0.03 1.12 16 18 C 0.05 0.46 6.86 37.06 0.25 0.72 16 19 O -0.35 -3.81 10.44 -35.23 -0.37 -4.18 16 20 C 0.08 0.78 1.12 -90.26 -0.10 0.68 16 21 C -0.16 -1.55 7.23 -26.09 -0.19 -1.74 16 22 C -0.13 -1.05 8.02 -25.84 -0.21 -1.26 16 23 C -0.12 -0.93 7.47 -26.11 -0.20 -1.12 16 24 C 0.10 1.04 5.68 -3.61 -0.02 1.02 16 25 C -0.12 -2.81 9.90 -39.79 -0.39 -3.21 16 26 C -0.14 -3.61 8.62 -39.26 -0.34 -3.95 16 27 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 28 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 29 H 0.11 2.63 6.21 -52.49 -0.33 2.30 16 30 H 0.39 5.71 6.41 -40.82 -0.26 5.45 16 31 H 0.10 1.37 7.05 -51.93 -0.37 1.00 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.60 7.11 -51.93 -0.37 0.23 16 35 H 0.09 0.88 7.95 -51.93 -0.41 0.47 16 36 H 0.07 0.76 7.18 -51.93 -0.37 0.39 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.10 0.60 8.09 -51.93 -0.42 0.18 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.09 0.85 5.65 -51.93 -0.29 0.55 16 43 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 44 H 0.13 3.51 6.13 -52.48 -0.32 3.19 16 LS Contribution 350.56 15.07 5.28 5.28 Total: -1.00 -31.04 350.56 -10.34 -41.39 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -6.07 Total: 10.77 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -4.20 Total: -12.74 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: -0.03 Total: -41.94 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.30 Total: -16.83 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.04 -10.34 -41.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157399498.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.095 kcal (2) G-P(sol) polarization free energy of solvation -31.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds