Wall clock time and date at job start Tue Mar 31 2020 11:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86802 * 120.00165 * 2 1 4 4 H 1.48497 * 109.47094 * 269.99792 * 3 2 1 5 5 H 1.48505 * 109.46813 * 29.99631 * 3 2 1 6 6 H 1.48500 * 109.47571 * 149.99614 * 3 2 1 7 7 C 1.39891 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00756 * 184.54335 * 7 2 1 9 9 C 1.41163 * 119.99760 * 4.55004 * 7 2 1 10 10 C 1.40872 * 120.16172 * 144.89646 * 9 7 2 11 11 C 1.36376 * 119.82407 * 179.71589 * 10 9 7 12 12 C 1.39481 * 120.16822 * 0.55922 * 11 10 9 13 13 N 1.39244 * 119.83011 * 179.73618 * 12 11 10 14 14 C 1.34775 * 119.99997 * 35.22356 * 13 12 11 15 15 O 1.21583 * 120.00055 * 355.64465 * 14 13 12 16 16 N 1.34781 * 119.99697 * 175.64091 * 14 13 12 17 17 C 1.47126 * 121.04296 * 185.06711 * 16 14 13 18 18 C 1.52803 * 108.93632 * 232.14902 * 17 16 14 19 19 O 1.43096 * 109.41887 * 306.15232 * 18 17 16 20 20 C 1.42581 * 113.96073 * 59.98044 * 19 18 17 21 21 C 1.53379 * 113.66096 * 72.58262 * 20 19 18 22 22 C 1.53851 * 86.95915 * 89.64280 * 21 20 19 23 23 C 1.53346 * 113.71057 * 170.65012 * 20 19 18 24 24 C 1.47321 * 121.04644 * 5.35051 * 16 14 13 25 25 C 1.39478 * 120.33425 * 359.71680 * 12 11 10 26 26 C 1.36372 * 120.16704 * 359.97438 * 25 12 11 27 27 H 0.97000 * 120.00210 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.08724 * 359.97438 * 10 9 7 29 29 H 1.08001 * 119.91480 * 180.28143 * 11 10 9 30 30 H 0.97002 * 119.99418 * 215.22018 * 13 12 11 31 31 H 1.08997 * 109.59503 * 351.96510 * 17 16 14 32 32 H 1.09000 * 109.59929 * 112.43028 * 17 16 14 33 33 H 1.09004 * 109.56206 * 186.10496 * 18 17 16 34 34 H 1.09003 * 109.37727 * 66.08214 * 18 17 16 35 35 H 1.09001 * 113.62797 * 204.15607 * 21 20 19 36 36 H 1.09000 * 113.63697 * 335.12187 * 21 20 19 37 37 H 1.09002 * 113.60417 * 270.55542 * 22 21 20 38 38 H 1.09005 * 113.59954 * 139.68580 * 22 21 20 39 39 H 1.09003 * 113.63222 * 24.92212 * 23 20 19 40 40 H 1.08999 * 113.63136 * 155.78911 * 23 20 19 41 41 H 1.09001 * 109.74914 * 251.10214 * 24 16 14 42 42 H 1.09002 * 109.74770 * 11.77343 * 24 16 14 43 43 H 1.07999 * 119.91515 * 179.97438 * 25 12 11 44 44 H 1.08008 * 120.08710 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4904 2.0464 -1.4000 5 1 1.4402 2.6527 0.7000 6 1 3.5403 1.4403 0.7001 7 6 2.0083 -1.2115 0.0005 8 1 3.0858 -1.2130 0.0746 9 6 1.3058 -2.4321 -0.0959 10 6 1.8633 -3.5156 -0.8027 11 6 1.1812 -4.6936 -0.8866 12 6 -0.0703 -4.8233 -0.2847 13 7 -0.7630 -6.0275 -0.3795 14 6 -0.0894 -7.1949 -0.3705 15 8 1.1263 -7.1952 -0.3597 16 7 -0.7637 -8.3619 -0.3736 17 6 -0.0570 -9.6467 -0.2527 18 6 -0.4957 -10.5632 -1.3940 19 8 -1.9231 -10.6635 -1.4018 20 6 -2.5902 -9.4162 -1.5816 21 6 -2.4866 -8.8628 -3.0083 22 6 -3.7755 -9.6442 -3.3172 23 6 -4.0995 -9.5524 -1.8160 24 6 -2.2308 -8.3915 -0.5042 25 6 -0.6313 -3.7531 0.4119 26 6 0.0416 -2.5710 0.5097 27 1 -0.4850 0.8400 -0.0004 28 1 2.8301 -3.4151 -1.2734 29 1 1.6093 -5.5267 -1.4243 30 1 -1.7303 -6.0262 -0.4519 31 1 1.0184 -9.4795 -0.3126 32 1 -0.3044 -10.1117 0.7016 33 1 -0.0623 -11.5535 -1.2539 34 1 -0.1551 -10.1480 -2.3425 35 1 -2.6068 -7.7811 -3.0671 36 1 -1.6153 -9.2236 -3.5548 37 1 -3.5964 -10.6620 -3.6637 38 1 -4.4761 -9.0981 -3.9490 39 1 -4.5249 -10.4675 -1.4040 40 1 -4.6661 -8.6620 -1.5434 41 1 -2.6793 -8.6829 0.4455 42 1 -2.5944 -7.4062 -0.7961 43 1 -1.6010 -3.8608 0.8749 44 1 -0.3942 -1.7429 1.0490 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157399498.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:41 Heat of formation + Delta-G solvation = -28.227964 kcal Electronic energy + Delta-G solvation = -26413.247814 eV Core-core repulsion = 22716.989605 eV Total energy + Delta-G solvation = -3696.258209 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.09232 -40.82061 -39.20662 -37.33152 -36.18185 -35.92111 -34.61397 -31.60384 -31.28525 -30.54662 -28.58631 -26.88020 -26.62259 -24.79516 -23.84750 -23.08740 -22.39320 -20.86940 -20.14219 -19.47248 -19.16673 -18.21694 -17.45349 -17.02181 -16.98388 -16.64992 -16.11480 -15.72730 -15.69151 -15.58620 -15.29606 -14.89554 -14.53676 -14.50017 -14.28001 -14.02804 -13.62321 -13.35025 -13.27729 -13.07038 -12.83941 -12.64964 -12.50363 -12.33736 -12.11753 -11.93076 -11.89438 -11.77269 -11.63253 -11.37639 -11.12092 -10.99274 -10.87776 -10.55853 -9.59005 -9.46397 -8.69411 -8.49719 -6.31175 0.83498 1.14351 1.40576 1.46034 1.53285 1.53750 2.10239 2.25686 2.55918 2.81706 2.87767 3.49962 3.58591 3.65496 3.69926 3.89452 3.93322 4.05330 4.11328 4.31265 4.38940 4.44556 4.51533 4.56810 4.70430 4.76897 4.77418 4.85473 4.91919 5.03000 5.09183 5.10712 5.14100 5.19036 5.28540 5.36407 5.41398 5.42744 5.66080 5.76039 6.01854 6.06788 6.15288 6.17991 6.39822 6.68809 6.91711 6.98371 7.01668 7.54250 8.43902 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.027846 B = 0.002755 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.291236 B =10160.669198 C =10671.298123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.030 3.970 3 Si 0.987 3.013 4 H -0.266 1.266 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.500 4.500 8 H 0.069 0.931 9 C 0.068 3.932 10 C -0.219 4.219 11 C -0.097 4.097 12 C 0.039 3.961 13 N -0.658 5.658 14 C 0.699 3.301 15 O -0.619 6.619 16 N -0.628 5.628 17 C 0.092 3.908 18 C 0.054 3.946 19 O -0.360 6.360 20 C 0.073 3.927 21 C -0.169 4.169 22 C -0.128 4.128 23 C -0.111 4.111 24 C 0.093 3.907 25 C -0.118 4.118 26 C -0.156 4.156 27 H 0.285 0.715 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.409 0.591 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.135 0.865 34 H 0.047 0.953 35 H 0.088 0.912 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.116 0.884 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.124 0.876 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.289 -17.711 -3.092 21.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.182 4.182 3 Si 0.808 3.192 4 H -0.191 1.191 5 H -0.190 1.190 6 H -0.186 1.186 7 C -0.531 4.531 8 H 0.087 0.913 9 C 0.066 3.934 10 C -0.239 4.239 11 C -0.117 4.117 12 C -0.055 4.055 13 N -0.307 5.307 14 C 0.401 3.599 15 O -0.500 6.500 16 N -0.366 5.366 17 C -0.031 4.031 18 C -0.023 4.023 19 O -0.279 6.279 20 C 0.033 3.967 21 C -0.206 4.206 22 C -0.165 4.165 23 C -0.149 4.149 24 C -0.030 4.030 25 C -0.139 4.139 26 C -0.176 4.176 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.123 0.877 30 H 0.248 0.752 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.152 0.848 34 H 0.065 0.935 35 H 0.107 0.893 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.135 0.865 41 H 0.110 0.890 42 H 0.116 0.884 43 H 0.142 0.858 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.734 -17.773 -3.039 20.984 hybrid contribution 0.513 1.051 -0.166 1.181 sum -10.221 -16.723 -3.205 19.859 Atomic orbital electron populations 1.69813 1.08406 1.29928 1.38603 1.26680 0.95843 1.04085 0.91552 0.85126 0.78779 0.76034 0.79222 1.19087 1.18962 1.18643 1.19694 0.94734 0.91422 1.47273 0.91261 1.18014 0.93264 0.92574 0.89597 1.20944 1.01578 0.95254 1.06145 1.20505 0.95266 0.96365 0.99583 1.17103 0.95515 0.85959 1.06911 1.42030 1.09899 1.02533 1.76246 1.16015 0.84949 0.81008 0.77892 1.90867 1.13461 1.86287 1.59344 1.47315 1.07626 1.04209 1.77449 1.22143 0.98498 0.82094 1.00338 1.22970 0.80986 1.01545 0.96845 1.87902 1.18570 1.28166 1.93213 1.22753 0.95920 0.84745 0.93328 1.23509 0.99503 1.00946 0.96669 1.22760 0.96401 1.00579 0.96781 1.22969 0.91152 1.04580 0.96176 1.22479 0.79013 1.00807 1.00658 1.20525 1.00388 0.93120 0.99845 1.21168 0.97192 0.96605 1.02659 0.90439 0.88726 0.87692 0.75180 0.89517 0.89504 0.84774 0.93507 0.89309 0.92533 0.90098 0.89853 0.89615 0.86530 0.89019 0.88389 0.85783 0.86180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.88 10.59 21.82 0.23 -43.65 16 2 C 0.03 1.56 5.42 85.24 0.46 2.02 16 3 Si 0.99 39.31 29.56 68.60 2.03 41.34 16 4 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 5 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 6 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 7 C -0.50 -27.88 9.02 23.39 0.21 -27.67 16 8 H 0.07 3.78 7.85 -2.91 -0.02 3.75 16 9 C 0.07 3.80 5.55 -21.27 -0.12 3.68 16 10 C -0.22 -11.68 9.74 22.48 0.22 -11.46 16 11 C -0.10 -4.82 8.61 22.13 0.19 -4.63 16 12 C 0.04 1.74 6.31 38.56 0.24 1.98 16 13 N -0.66 -22.90 5.21 -316.78 -1.65 -24.55 16 14 C 0.70 24.96 8.15 179.05 1.46 26.42 16 15 O -0.62 -27.71 13.22 -3.98 -0.05 -27.76 16 16 N -0.63 -16.28 3.03 -836.55 -2.54 -18.82 16 17 C 0.09 2.06 6.58 86.19 0.57 2.62 16 18 C 0.05 0.97 6.86 71.92 0.49 1.46 16 19 O -0.36 -6.86 10.44 -148.98 -1.56 -8.41 16 20 C 0.07 1.24 1.12 -10.56 -0.01 1.23 16 21 C -0.17 -2.96 7.23 31.01 0.22 -2.73 16 22 C -0.13 -1.69 8.02 31.17 0.25 -1.44 16 23 C -0.11 -1.32 7.47 31.00 0.23 -1.09 16 24 C 0.09 1.71 5.68 86.21 0.49 2.20 16 25 C -0.12 -5.35 9.90 22.13 0.22 -5.13 16 26 C -0.16 -8.20 8.62 22.48 0.19 -8.01 16 27 H 0.28 13.47 8.30 -92.71 -0.77 12.71 16 28 H 0.09 4.87 8.06 -2.91 -0.02 4.84 16 29 H 0.11 5.25 6.21 -2.91 -0.02 5.24 16 30 H 0.41 10.92 6.41 -92.71 -0.59 10.33 16 31 H 0.09 2.28 7.05 -2.39 -0.02 2.26 16 32 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.13 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.05 0.95 7.11 -2.39 -0.02 0.93 16 35 H 0.09 1.57 7.95 -2.39 -0.02 1.55 16 36 H 0.06 1.16 7.18 -2.39 -0.02 1.14 16 37 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.12 0.95 8.09 -2.39 -0.02 0.93 16 41 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.10 1.58 5.65 -2.39 -0.01 1.56 16 43 H 0.12 4.67 8.06 -2.91 -0.02 4.64 16 44 H 0.12 6.54 6.13 -2.91 -0.02 6.52 16 Total: -1.00 -68.96 350.56 2.22 -66.74 By element: Atomic # 1 Polarization: 35.23 SS G_CDS: 0.43 Total: 35.67 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: 5.32 Total: -20.55 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -3.96 Total: -87.02 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -1.61 Total: -36.18 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Total: -68.96 2.22 -66.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157399498.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.509 kcal (2) G-P(sol) polarization free energy of solvation -68.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds