Wall clock time and date at job start Tue Mar 31 2020 10:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31018 * 1 3 3 Si 1.86797 * 120.00006 * 2 1 4 4 H 1.48503 * 109.46777 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47295 * 300.00036 * 3 2 1 6 6 H 1.48496 * 109.47117 * 60.00338 * 3 2 1 7 7 C 1.39588 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99664 * 190.31536 * 7 2 1 9 9 N 1.36115 * 119.99928 * 10.31302 * 7 2 1 10 10 C 1.34773 * 120.00148 * 208.95758 * 9 7 2 11 11 O 1.21500 * 119.99933 * 3.93362 * 10 9 7 12 12 C 1.48832 * 120.00108 * 183.93309 * 10 9 7 13 13 O 1.21436 * 120.00399 * 3.43310 * 12 10 9 14 14 N 1.34780 * 119.99735 * 183.15403 * 12 10 9 15 15 C 1.46502 * 119.99731 * 180.27773 * 14 12 10 16 16 C 1.52994 * 109.47017 * 180.02562 * 15 14 12 17 17 C 1.52997 * 109.47157 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.47569 * 180.02562 * 17 16 15 19 19 C 1.38236 * 119.99669 * 269.72777 * 18 17 16 20 20 C 1.38240 * 119.99676 * 179.75880 * 19 18 17 21 21 C 1.38234 * 120.00153 * 0.51021 * 20 19 18 22 22 C 1.38237 * 119.99637 * 359.74627 * 21 20 19 23 23 C 1.38230 * 120.00277 * 359.97438 * 22 21 20 24 24 C 1.46508 * 120.00139 * 28.96064 * 9 7 2 25 25 C 1.52999 * 117.49735 * 118.63480 * 24 9 7 26 26 C 1.52998 * 117.49692 * 49.97337 * 24 9 7 27 27 H 0.97005 * 119.99936 * 359.97438 * 1 2 3 28 28 H 0.96997 * 120.00152 * 0.28019 * 14 12 10 29 29 H 1.09004 * 109.47056 * 300.00261 * 15 14 12 30 30 H 1.08998 * 109.47149 * 59.99854 * 15 14 12 31 31 H 1.08994 * 109.47163 * 299.99828 * 16 15 14 32 32 H 1.08998 * 109.47455 * 59.99827 * 16 15 14 33 33 H 1.09006 * 109.47205 * 299.99619 * 17 16 15 34 34 H 1.08997 * 109.47640 * 60.00023 * 17 16 15 35 35 H 1.07999 * 120.00371 * 359.97438 * 19 18 17 36 36 H 1.07997 * 119.99889 * 180.22889 * 20 19 18 37 37 H 1.07998 * 120.00213 * 179.71797 * 21 20 19 38 38 H 1.08001 * 119.99931 * 179.97438 * 22 21 20 39 39 H 1.08007 * 120.00126 * 179.97438 * 23 22 21 40 40 H 1.09002 * 115.54960 * 264.30550 * 24 9 7 41 41 H 1.08994 * 117.50001 * 0.02562 * 25 24 9 42 42 H 1.08999 * 117.49508 * 145.02247 * 25 24 9 43 43 H 1.09002 * 117.50108 * 214.97716 * 26 24 9 44 44 H 1.09001 * 117.50238 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 3.7042 1.3463 -0.0006 5 1 1.8854 2.3965 -1.2125 6 1 1.8855 2.3963 1.2125 7 6 2.0081 -1.2089 -0.0005 8 1 3.0750 -1.2165 0.1669 9 7 1.3439 -2.3780 -0.2121 10 6 1.8048 -3.5225 0.3303 11 8 2.7714 -3.5000 1.0661 12 6 1.1296 -4.8140 0.0279 13 8 0.2027 -4.8457 -0.7560 14 7 1.5507 -5.9493 0.6199 15 6 0.8901 -7.2215 0.3176 16 6 1.5555 -8.3440 1.1163 17 6 0.8652 -9.6725 0.8011 18 6 1.5202 -10.7782 1.5882 19 6 2.5848 -11.4746 1.0473 20 6 3.1889 -12.4855 1.7713 21 6 2.7216 -12.8071 3.0319 22 6 1.6536 -12.1142 3.5706 23 6 1.0533 -11.0995 2.8490 24 6 0.1282 -2.3924 -1.0295 25 6 0.1442 -3.2377 -2.3046 26 6 0.1887 -1.7104 -2.3977 27 1 -0.4850 0.8401 0.0004 28 1 2.2911 -5.9240 1.2461 29 1 -0.1635 -7.1575 0.5900 30 1 0.9777 -7.4321 -0.7482 31 1 2.6091 -8.4081 0.8443 32 1 1.4676 -8.1332 2.1820 33 1 -0.1883 -9.6082 1.0735 34 1 0.9528 -9.8837 -0.2646 35 1 2.9469 -11.2266 0.0605 36 1 4.0230 -13.0271 1.3502 37 1 3.1906 -13.5999 3.5957 38 1 1.2882 -12.3657 4.5553 39 1 0.2186 -10.5584 3.2698 40 1 -0.8100 -2.3314 -0.4778 41 1 1.0590 -3.7835 -2.5352 42 1 -0.7835 -3.7325 -2.5921 43 1 -0.7096 -1.2011 -2.7465 44 1 1.1330 -1.2507 -2.6896 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264203327.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:38 Heat of formation + Delta-G solvation = -8.208249 kcal Electronic energy + Delta-G solvation = -25408.037352 eV Core-core repulsion = 21712.647263 eV Total energy + Delta-G solvation = -3695.390089 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.75317 -39.48910 -37.60648 -36.14746 -35.56997 -33.33475 -33.08535 -31.18597 -31.11867 -30.18132 -26.56403 -25.47533 -23.11179 -22.80670 -21.91855 -21.45936 -21.04913 -21.04367 -19.02082 -17.12151 -16.94101 -16.70267 -15.92992 -15.84700 -15.42685 -15.20125 -14.94263 -14.67153 -14.16688 -13.95006 -13.88438 -13.61235 -13.51706 -13.21202 -12.92003 -12.51945 -12.24356 -12.13762 -11.87324 -11.71309 -11.49064 -11.31878 -11.15476 -11.03590 -10.86175 -10.57148 -10.47549 -10.45157 -10.35033 -9.65533 -9.15604 -9.06425 -8.92952 -8.87832 -8.55460 -7.97632 -7.73031 -6.42978 -4.00302 1.11602 1.16610 2.54462 3.15667 3.19701 3.24817 3.42455 3.60077 4.11151 4.36686 4.48440 4.58498 4.76443 4.84904 4.88153 4.90458 4.97559 5.10719 5.16044 5.23088 5.27003 5.29035 5.51559 5.52468 5.55567 5.76426 5.80920 5.84247 6.02932 6.07312 6.13070 6.16718 6.23298 6.27910 6.41696 6.42330 6.67276 6.77423 6.86659 6.89409 7.16616 7.32658 7.42977 7.80047 8.02086 8.32589 8.73754 9.07099 9.27145 9.85683 10.58421 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.028404 B = 0.002294 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.547613 B =12201.276099 C =12702.295728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.047 3.953 3 Si 0.926 3.074 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.315 4.315 8 H 0.101 0.899 9 N -0.366 5.366 10 C 0.413 3.587 11 O -0.587 6.587 12 C 0.504 3.496 13 O -0.522 6.522 14 N -0.719 5.719 15 C 0.123 3.877 16 C -0.125 4.125 17 C -0.078 4.078 18 C -0.078 4.078 19 C -0.117 4.117 20 C -0.119 4.119 21 C -0.128 4.128 22 C -0.119 4.119 23 C -0.117 4.117 24 C 0.127 3.873 25 C -0.147 4.147 26 C -0.174 4.174 27 H 0.272 0.728 28 H 0.407 0.593 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.482 -19.846 1.402 19.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.162 4.162 3 Si 0.751 3.249 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.444 4.444 8 H 0.119 0.881 9 N -0.082 5.082 10 C 0.199 3.801 11 O -0.474 6.474 12 C 0.288 3.712 13 O -0.397 6.397 14 N -0.374 5.374 15 C -0.001 4.001 16 C -0.163 4.163 17 C -0.116 4.116 18 C -0.078 4.078 19 C -0.135 4.135 20 C -0.137 4.137 21 C -0.146 4.146 22 C -0.137 4.137 23 C -0.135 4.135 24 C 0.023 3.977 25 C -0.186 4.186 26 C -0.211 4.211 27 H 0.083 0.917 28 H 0.242 0.758 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.124 0.876 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.099 0.901 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.085 -19.700 1.166 19.735 hybrid contribution 0.608 0.832 0.382 1.099 sum 0.693 -18.868 1.549 18.944 Atomic orbital electron populations 1.69765 1.06374 1.28065 1.43787 1.25517 0.95367 0.99944 0.95351 0.85875 0.80094 0.80899 0.77984 1.18933 1.20352 1.20431 1.19654 0.93469 0.82129 1.49143 0.88098 1.42799 1.21564 1.05835 1.38026 1.19308 0.89416 0.84715 0.86685 1.90583 1.30215 1.86222 1.40429 1.20728 0.84233 0.85686 0.80540 1.90747 1.28691 1.86736 1.33573 1.45758 1.37613 1.06457 1.47608 1.21270 0.96944 0.82388 0.99542 1.21771 1.00461 0.93068 1.01030 1.20534 0.99550 0.91773 0.99754 1.19919 0.96175 0.96791 0.94932 1.21101 0.96080 0.96196 1.00144 1.21155 0.99864 0.97784 0.94946 1.21145 0.97300 1.00184 0.95969 1.21156 0.96468 0.96287 0.99821 1.21104 1.00321 0.97727 0.94350 1.21216 0.88952 1.01993 0.85556 1.22970 1.01624 0.91817 1.02155 1.23135 1.01798 0.94917 1.01292 0.91736 0.75763 0.91651 0.91701 0.91016 0.90989 0.90507 0.90525 0.86008 0.86183 0.86308 0.86172 0.85986 0.87594 0.90663 0.89615 0.90087 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.10 10.96 55.53 0.61 -21.50 16 2 C 0.05 1.22 4.87 -17.40 -0.08 1.13 16 3 Si 0.93 20.16 29.57 -169.99 -5.03 15.13 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 7 C -0.32 -8.70 8.77 -15.15 -0.13 -8.83 16 8 H 0.10 2.88 7.56 -52.49 -0.40 2.48 16 9 N -0.37 -9.70 2.89 -108.49 -0.31 -10.01 16 10 C 0.41 10.54 7.60 -11.88 -0.09 10.45 16 11 O -0.59 -16.08 16.26 5.37 0.09 -15.99 16 12 C 0.50 10.82 7.62 -11.87 -0.09 10.73 16 13 O -0.52 -11.44 11.26 5.42 0.06 -11.37 16 14 N -0.72 -12.21 5.55 -60.93 -0.34 -12.55 16 15 C 0.12 1.59 5.67 -4.04 -0.02 1.57 16 16 C -0.13 -1.25 5.31 -26.74 -0.14 -1.40 16 17 C -0.08 -0.67 5.35 -27.88 -0.15 -0.82 16 18 C -0.08 -0.72 5.13 -104.62 -0.54 -1.25 16 19 C -0.12 -1.04 9.70 -39.58 -0.38 -1.42 16 20 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 21 C -0.13 -1.03 10.05 -39.58 -0.40 -1.43 16 22 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 23 C -0.12 -1.04 9.70 -39.59 -0.38 -1.43 16 24 C 0.13 3.09 3.02 -67.93 -0.20 2.88 16 25 C -0.15 -3.11 7.05 -26.69 -0.19 -3.30 16 26 C -0.17 -3.80 8.99 -26.69 -0.24 -4.04 16 27 H 0.27 6.66 8.30 -40.82 -0.34 6.32 16 28 H 0.41 6.66 7.94 -40.82 -0.32 6.33 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 34 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 40 H 0.11 2.73 7.93 -51.93 -0.41 2.32 16 41 H 0.07 1.63 7.69 -51.93 -0.40 1.23 16 42 H 0.09 1.68 8.04 -51.93 -0.42 1.27 16 43 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 44 H 0.08 1.94 8.04 -51.93 -0.42 1.52 16 LS Contribution 369.39 15.07 5.57 5.57 Total: -1.00 -30.85 369.39 -9.77 -40.61 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -6.57 Total: 10.04 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -3.84 Total: 0.07 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: -0.04 Total: -44.06 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: 0.15 Total: -27.37 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.13 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.85 -9.77 -40.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264203327.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.404 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds