Wall clock time and date at job start Tue Mar 31 2020 10:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31018 * 1 3 3 Si 1.86797 * 120.00006 * 2 1 4 4 H 1.48503 * 109.46777 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47295 * 300.00036 * 3 2 1 6 6 H 1.48496 * 109.47117 * 60.00338 * 3 2 1 7 7 C 1.39588 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99664 * 190.31536 * 7 2 1 9 9 N 1.36115 * 119.99928 * 10.31302 * 7 2 1 10 10 C 1.34773 * 120.00148 * 208.95758 * 9 7 2 11 11 O 1.21500 * 119.99933 * 3.93362 * 10 9 7 12 12 C 1.48832 * 120.00108 * 183.93309 * 10 9 7 13 13 O 1.21436 * 120.00399 * 3.43310 * 12 10 9 14 14 N 1.34780 * 119.99735 * 183.15403 * 12 10 9 15 15 C 1.46502 * 119.99731 * 180.27773 * 14 12 10 16 16 C 1.52994 * 109.47017 * 180.02562 * 15 14 12 17 17 C 1.52997 * 109.47157 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.47569 * 180.02562 * 17 16 15 19 19 C 1.38236 * 119.99669 * 269.72777 * 18 17 16 20 20 C 1.38240 * 119.99676 * 179.75880 * 19 18 17 21 21 C 1.38234 * 120.00153 * 0.51021 * 20 19 18 22 22 C 1.38237 * 119.99637 * 359.74627 * 21 20 19 23 23 C 1.38230 * 120.00277 * 359.97438 * 22 21 20 24 24 C 1.46508 * 120.00139 * 28.96064 * 9 7 2 25 25 C 1.52999 * 117.49735 * 118.63480 * 24 9 7 26 26 C 1.52998 * 117.49692 * 49.97337 * 24 9 7 27 27 H 0.97005 * 119.99936 * 359.97438 * 1 2 3 28 28 H 0.96997 * 120.00152 * 0.28019 * 14 12 10 29 29 H 1.09004 * 109.47056 * 300.00261 * 15 14 12 30 30 H 1.08998 * 109.47149 * 59.99854 * 15 14 12 31 31 H 1.08994 * 109.47163 * 299.99828 * 16 15 14 32 32 H 1.08998 * 109.47455 * 59.99827 * 16 15 14 33 33 H 1.09006 * 109.47205 * 299.99619 * 17 16 15 34 34 H 1.08997 * 109.47640 * 60.00023 * 17 16 15 35 35 H 1.07999 * 120.00371 * 359.97438 * 19 18 17 36 36 H 1.07997 * 119.99889 * 180.22889 * 20 19 18 37 37 H 1.07998 * 120.00213 * 179.71797 * 21 20 19 38 38 H 1.08001 * 119.99931 * 179.97438 * 22 21 20 39 39 H 1.08007 * 120.00126 * 179.97438 * 23 22 21 40 40 H 1.09002 * 115.54960 * 264.30550 * 24 9 7 41 41 H 1.08994 * 117.50001 * 0.02562 * 25 24 9 42 42 H 1.08999 * 117.49508 * 145.02247 * 25 24 9 43 43 H 1.09002 * 117.50108 * 214.97716 * 26 24 9 44 44 H 1.09001 * 117.50238 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 3.7042 1.3463 -0.0006 5 1 1.8854 2.3965 -1.2125 6 1 1.8855 2.3963 1.2125 7 6 2.0081 -1.2089 -0.0005 8 1 3.0750 -1.2165 0.1669 9 7 1.3439 -2.3780 -0.2121 10 6 1.8048 -3.5225 0.3303 11 8 2.7714 -3.5000 1.0661 12 6 1.1296 -4.8140 0.0279 13 8 0.2027 -4.8457 -0.7560 14 7 1.5507 -5.9493 0.6199 15 6 0.8901 -7.2215 0.3176 16 6 1.5555 -8.3440 1.1163 17 6 0.8652 -9.6725 0.8011 18 6 1.5202 -10.7782 1.5882 19 6 2.5848 -11.4746 1.0473 20 6 3.1889 -12.4855 1.7713 21 6 2.7216 -12.8071 3.0319 22 6 1.6536 -12.1142 3.5706 23 6 1.0533 -11.0995 2.8490 24 6 0.1282 -2.3924 -1.0295 25 6 0.1442 -3.2377 -2.3046 26 6 0.1887 -1.7104 -2.3977 27 1 -0.4850 0.8401 0.0004 28 1 2.2911 -5.9240 1.2461 29 1 -0.1635 -7.1575 0.5900 30 1 0.9777 -7.4321 -0.7482 31 1 2.6091 -8.4081 0.8443 32 1 1.4676 -8.1332 2.1820 33 1 -0.1883 -9.6082 1.0735 34 1 0.9528 -9.8837 -0.2646 35 1 2.9469 -11.2266 0.0605 36 1 4.0230 -13.0271 1.3502 37 1 3.1906 -13.5999 3.5957 38 1 1.2882 -12.3657 4.5553 39 1 0.2186 -10.5584 3.2698 40 1 -0.8100 -2.3314 -0.4778 41 1 1.0590 -3.7835 -2.5352 42 1 -0.7835 -3.7325 -2.5921 43 1 -0.7096 -1.2011 -2.7465 44 1 1.1330 -1.2507 -2.6896 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264203327.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:37 Heat of formation + Delta-G solvation = -25.447496 kcal Electronic energy + Delta-G solvation = -25408.784902 eV Core-core repulsion = 21712.647263 eV Total energy + Delta-G solvation = -3696.137639 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.48399 -40.17447 -39.31002 -38.05308 -36.73562 -35.02640 -34.42954 -33.16239 -31.72162 -31.11309 -28.10876 -26.89307 -24.61983 -23.41683 -23.36546 -23.07098 -22.70223 -21.79499 -20.67316 -18.93767 -18.52938 -17.73429 -17.50495 -17.07874 -16.79203 -16.52012 -16.13198 -15.93181 -15.71469 -15.62832 -15.27793 -14.74962 -14.29173 -14.23377 -14.12511 -13.96253 -13.80769 -13.38214 -13.17196 -12.92366 -12.91094 -12.58938 -12.55132 -12.28043 -12.20507 -12.10176 -12.00493 -11.72952 -11.60086 -11.51224 -10.96219 -10.69610 -10.05640 -9.89240 -9.77816 -9.67690 -9.54967 -8.39284 -6.08555 0.48274 0.54314 0.72934 1.41054 1.43724 1.54295 1.89608 2.33286 2.48415 2.91564 3.03029 3.13629 3.35481 3.71825 3.79706 3.93905 4.15806 4.18753 4.27405 4.27907 4.33893 4.37649 4.39584 4.54072 4.57770 4.66896 4.71977 4.80752 4.88650 4.94165 5.12345 5.13187 5.18481 5.25135 5.29342 5.35394 5.41193 5.45727 5.47626 5.62356 5.67191 5.77885 5.91057 6.17641 6.23734 6.46199 6.94780 7.15236 7.31667 7.86490 8.60894 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.028404 B = 0.002294 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.547613 B =12201.276099 C =12702.295728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.017 3.983 3 Si 0.990 3.010 4 H -0.270 1.270 5 H -0.262 1.262 6 H -0.273 1.273 7 C -0.354 4.354 8 H 0.079 0.921 9 N -0.378 5.378 10 C 0.395 3.605 11 O -0.618 6.618 12 C 0.509 3.491 13 O -0.529 6.529 14 N -0.703 5.703 15 C 0.122 3.878 16 C -0.113 4.113 17 C -0.072 4.072 18 C -0.091 4.091 19 C -0.130 4.130 20 C -0.129 4.129 21 C -0.136 4.136 22 C -0.130 4.130 23 C -0.131 4.131 24 C 0.105 3.895 25 C -0.116 4.116 26 C -0.164 4.164 27 H 0.280 0.720 28 H 0.410 0.590 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.131 0.869 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.130 0.870 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.106 0.894 43 H 0.097 0.903 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.174 -20.735 0.952 20.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.190 4.190 3 Si 0.812 3.188 4 H -0.194 1.194 5 H -0.187 1.187 6 H -0.198 1.198 7 C -0.482 4.482 8 H 0.097 0.903 9 N -0.094 5.094 10 C 0.182 3.818 11 O -0.507 6.507 12 C 0.291 3.709 13 O -0.406 6.406 14 N -0.357 5.357 15 C 0.000 4.000 16 C -0.151 4.151 17 C -0.109 4.109 18 C -0.091 4.091 19 C -0.148 4.148 20 C -0.147 4.147 21 C -0.154 4.154 22 C -0.147 4.147 23 C -0.149 4.149 24 C 0.001 3.999 25 C -0.154 4.154 26 C -0.202 4.202 27 H 0.090 0.910 28 H 0.246 0.754 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.148 0.852 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.124 0.876 43 H 0.115 0.885 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.244 -20.626 0.714 20.640 hybrid contribution 0.701 1.010 0.591 1.364 sum 0.456 -19.616 1.305 19.665 Atomic orbital electron populations 1.69833 1.07308 1.29303 1.43118 1.26268 0.96220 1.02428 0.94127 0.84939 0.78472 0.76746 0.78606 1.19389 1.18694 1.19790 1.19648 0.92997 0.83667 1.51864 0.90337 1.43018 1.21990 1.05942 1.38431 1.20143 0.89248 0.86257 0.86123 1.90535 1.31490 1.87106 1.41575 1.20005 0.84141 0.85436 0.81299 1.90715 1.28881 1.86769 1.34222 1.45756 1.37132 1.06579 1.46195 1.21527 0.96992 0.81068 1.00463 1.21671 1.00389 0.92671 1.00393 1.20474 0.99641 0.90581 1.00250 1.20021 0.96615 0.97225 0.95240 1.21328 0.96200 0.96497 1.00776 1.21446 1.00336 0.97783 0.95146 1.21458 0.97228 1.00540 0.96145 1.21441 0.96573 0.96143 1.00590 1.21324 1.00817 0.98201 0.94546 1.21144 0.87388 1.05285 0.86091 1.22896 1.02257 0.91284 0.98983 1.23121 1.01889 0.95724 0.99432 0.91007 0.75370 0.91422 0.91129 0.90864 0.91040 0.89861 0.89703 0.85110 0.84549 0.84483 0.84617 0.85242 0.89598 0.91154 0.87576 0.88506 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -45.08 10.96 21.77 0.24 -44.84 16 2 C 0.02 0.89 4.87 85.14 0.41 1.30 16 3 Si 0.99 41.26 29.57 68.60 2.03 43.29 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 6 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.35 -20.07 8.77 84.35 0.74 -19.33 16 8 H 0.08 4.69 7.56 -2.91 -0.02 4.66 16 9 N -0.38 -20.55 2.89 -615.44 -1.78 -22.32 16 10 C 0.40 20.71 7.60 87.08 0.66 21.37 16 11 O -0.62 -34.92 16.26 -3.71 -0.06 -34.99 16 12 C 0.51 21.82 7.62 87.08 0.66 22.48 16 13 O -0.53 -22.79 11.26 -3.52 -0.04 -22.83 16 14 N -0.70 -23.39 5.55 -465.01 -2.58 -25.97 16 15 C 0.12 2.98 5.67 86.38 0.49 3.47 16 16 C -0.11 -2.08 5.31 30.59 0.16 -1.92 16 17 C -0.07 -1.10 5.35 29.85 0.16 -0.94 16 18 C -0.09 -1.54 5.13 -19.86 -0.10 -1.64 16 19 C -0.13 -2.12 9.70 22.27 0.22 -1.90 16 20 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 21 C -0.14 -1.98 10.05 22.27 0.22 -1.75 16 22 C -0.13 -1.97 10.05 22.27 0.22 -1.75 16 23 C -0.13 -2.17 9.70 22.27 0.22 -1.95 16 24 C 0.11 5.13 3.02 44.99 0.14 5.26 16 25 C -0.12 -4.78 7.05 30.62 0.22 -4.57 16 26 C -0.16 -7.07 8.99 30.62 0.28 -6.80 16 27 H 0.28 13.50 8.30 -92.70 -0.77 12.73 16 28 H 0.41 13.26 7.94 -92.71 -0.74 12.53 16 29 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.17 8.09 -2.38 -0.02 1.15 16 34 H 0.08 1.16 8.08 -2.39 -0.02 1.14 16 35 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 37 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 38 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 39 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16 40 H 0.09 4.50 7.93 -2.39 -0.02 4.48 16 41 H 0.07 2.98 7.69 -2.39 -0.02 2.96 16 42 H 0.11 3.94 8.04 -2.39 -0.02 3.92 16 43 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 44 H 0.07 3.35 8.04 -2.39 -0.02 3.33 16 Total: -1.00 -66.94 369.39 3.00 -63.94 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: 0.26 Total: 34.10 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 4.92 Total: 9.62 kcal Atomic # 7 Polarization: -89.01 SS G_CDS: -4.12 Total: -93.13 kcal Atomic # 8 Polarization: -57.72 SS G_CDS: -0.10 Total: -57.82 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -66.94 3.00 -63.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264203327.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.491 kcal (2) G-P(sol) polarization free energy of solvation -66.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds