Wall clock time and date at job start Tue Mar 31 2020 11:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30650 * 1 3 3 Si 1.86804 * 119.99900 * 2 1 4 4 H 1.48498 * 109.47197 * 275.41305 * 3 2 1 5 5 H 1.48508 * 109.47141 * 35.41408 * 3 2 1 6 6 H 1.48501 * 109.47051 * 155.40837 * 3 2 1 7 7 C 1.40221 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00161 * 341.74645 * 7 2 1 9 9 C 1.41118 * 119.99881 * 161.74532 * 7 2 1 10 10 C 1.40888 * 120.10513 * 330.15503 * 9 7 2 11 11 C 1.36310 * 119.89420 * 179.97438 * 10 9 7 12 12 C 1.40014 * 120.10345 * 0.02562 * 11 10 9 13 13 C 1.47646 * 119.89233 * 179.97438 * 12 11 10 14 14 O 1.21579 * 120.00086 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99622 * 179.72495 * 13 12 11 16 16 C 1.46498 * 119.99805 * 180.27838 * 15 13 12 17 17 H 1.08998 * 109.47168 * 35.00149 * 16 15 13 18 18 C 1.53001 * 109.47181 * 274.99959 * 16 15 13 19 19 C 1.52997 * 109.47492 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.47066 * 60.00024 * 19 18 16 21 21 C 1.53000 * 109.47295 * 300.00170 * 20 19 18 22 22 C 1.52998 * 109.47309 * 155.00025 * 16 15 13 23 23 H 1.08998 * 109.46904 * 59.99963 * 22 16 15 24 24 C 1.50698 * 109.47007 * 300.00193 * 22 16 15 25 25 N 1.34784 * 119.99955 * 180.02562 * 24 22 16 26 26 O 1.21279 * 120.00436 * 359.97438 * 24 22 16 27 27 C 1.40011 * 120.21387 * 0.24895 * 12 11 10 28 28 C 1.36318 * 120.10393 * 359.44923 * 27 12 11 29 29 H 0.96997 * 119.99963 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.04945 * 359.95816 * 10 9 7 31 31 H 1.08001 * 119.94988 * 180.02562 * 11 10 9 32 32 H 0.96999 * 120.00041 * 0.27532 * 15 13 12 33 33 H 1.08998 * 109.47224 * 300.00155 * 18 16 15 34 34 H 1.09007 * 109.47206 * 60.00015 * 18 16 15 35 35 H 1.09003 * 109.47451 * 179.97438 * 19 18 16 36 36 H 1.08998 * 109.47100 * 300.00338 * 19 18 16 37 37 H 1.08994 * 109.47171 * 59.99756 * 20 19 18 38 38 H 1.08995 * 109.47597 * 180.02562 * 20 19 18 39 39 H 1.08998 * 109.47741 * 179.97438 * 21 20 19 40 40 H 1.09000 * 109.47157 * 300.00415 * 21 20 19 41 41 H 0.97005 * 119.99704 * 359.97438 * 25 24 22 42 42 H 0.96997 * 119.99867 * 179.97438 * 25 24 22 43 43 H 1.07996 * 119.94924 * 179.72145 * 27 12 11 44 44 H 1.07995 * 120.05763 * 180.29383 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 2.3736 2.1125 -1.3938 5 1 1.4998 2.6170 0.8114 6 1 3.5905 1.4099 0.5826 7 6 2.0076 -1.2143 -0.0005 8 1 1.5084 -2.1262 0.2920 9 6 3.3655 -1.2449 -0.3834 10 6 3.8579 -0.3110 -1.3163 11 6 5.1705 -0.3440 -1.6826 12 6 6.0288 -1.3045 -1.1338 13 6 7.4495 -1.3364 -1.5343 14 8 7.8725 -0.5293 -2.3391 15 7 8.2788 -2.2565 -1.0031 16 6 9.6899 -2.2844 -1.3959 17 1 10.0395 -1.2663 -1.5671 18 6 9.8455 -3.1000 -2.6810 19 6 11.3191 -3.1286 -3.0917 20 6 12.1469 -3.7708 -1.9767 21 6 11.9913 -2.9552 -0.6916 22 6 10.5172 -2.9269 -0.2808 23 1 10.1675 -3.9450 -0.1095 24 6 10.3638 -2.1236 0.9850 25 7 11.0071 -2.5040 2.1067 26 8 9.6624 -1.1343 0.9942 27 6 5.5429 -2.2383 -0.2106 28 6 4.2332 -2.2092 0.1665 29 1 -0.4850 0.8400 0.0004 30 1 3.1964 0.4298 -1.7406 31 1 5.5490 0.3717 -2.3974 32 1 7.9414 -2.9003 -0.3607 33 1 9.4959 -4.1181 -2.5098 34 1 9.2562 -2.6423 -3.4756 35 1 11.4300 -3.7101 -4.0069 36 1 11.6683 -2.1104 -3.2630 37 1 11.7976 -4.7890 -1.8052 38 1 13.1967 -3.7908 -2.2689 39 1 12.5806 -3.4129 0.1030 40 1 12.3405 -1.9370 -0.8629 41 1 11.5685 -3.2951 2.0992 42 1 10.9087 -1.9867 2.9213 43 1 6.2076 -2.9801 0.2066 44 1 3.8603 -2.9269 0.8821 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270302632.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:01 Heat of formation + Delta-G solvation = -81.445204 kcal Electronic energy + Delta-G solvation = -26401.358458 eV Core-core repulsion = 22702.792576 eV Total energy + Delta-G solvation = -3698.565882 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.56182 -38.88653 -37.74547 -36.95776 -34.09422 -33.77853 -33.49149 -31.08866 -30.87877 -29.90832 -29.11830 -25.77576 -23.99209 -22.89029 -21.83663 -20.91848 -20.73762 -20.11222 -19.46039 -17.87494 -17.56741 -16.94063 -16.68976 -15.97336 -15.32282 -15.00072 -14.70412 -14.42391 -14.22951 -14.11123 -13.76211 -13.53907 -13.39423 -13.32378 -12.75202 -12.63198 -12.48899 -12.38109 -12.24864 -11.78591 -11.55733 -11.40182 -11.11217 -10.91757 -10.84115 -10.76071 -10.48685 -10.34643 -10.14425 -9.86992 -9.79748 -9.63386 -9.26265 -8.93840 -8.51340 -7.85776 -7.65632 -7.14290 -4.65129 2.12650 2.55822 2.73867 3.06876 3.17929 3.28445 3.33055 3.70435 3.82368 3.92089 4.31172 4.44351 4.58288 4.63093 4.88042 4.97491 5.01749 5.08308 5.23699 5.27286 5.39621 5.45564 5.61999 5.76684 5.78905 5.83446 5.87153 5.95086 6.03314 6.13774 6.22759 6.32877 6.48488 6.63068 6.73999 6.77093 6.99524 7.05770 7.15478 7.34549 7.47956 7.59047 7.77983 7.98235 8.17869 8.18798 8.24334 8.52296 8.63317 9.11315 9.85548 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.022622 B = 0.003201 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.437132 B = 8744.378967 C = 9155.848826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.084 3.916 3 Si 0.913 3.087 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.240 1.240 7 C -0.429 4.429 8 H 0.095 0.905 9 C 0.107 3.893 10 C -0.252 4.252 11 C -0.010 4.010 12 C -0.278 4.278 13 C 0.581 3.419 14 O -0.572 6.572 15 N -0.726 5.726 16 C 0.171 3.829 17 H 0.090 0.910 18 C -0.130 4.130 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.106 4.106 22 C -0.117 4.117 23 H 0.101 0.899 24 C 0.512 3.488 25 N -0.861 5.861 26 O -0.514 6.514 27 C -0.042 4.042 28 C -0.219 4.219 29 H 0.290 0.710 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.392 0.608 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.397 0.603 42 H 0.400 0.600 43 H 0.092 0.908 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.859 -9.022 1.496 23.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.138 4.138 3 Si 0.739 3.261 4 H -0.192 1.192 5 H -0.216 1.216 6 H -0.163 1.163 7 C -0.455 4.455 8 H 0.113 0.887 9 C 0.104 3.896 10 C -0.271 4.271 11 C -0.029 4.029 12 C -0.282 4.282 13 C 0.375 3.625 14 O -0.454 6.454 15 N -0.376 5.376 16 C 0.065 3.935 17 H 0.108 0.892 18 C -0.169 4.169 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.144 4.144 22 C -0.139 4.139 23 H 0.119 0.881 24 C 0.296 3.704 25 N -0.425 5.425 26 O -0.387 6.387 27 C -0.061 4.061 28 C -0.238 4.238 29 H 0.101 0.899 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.226 0.774 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.225 0.775 42 H 0.231 0.769 43 H 0.110 0.890 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 21.344 -7.731 0.756 22.713 hybrid contribution 0.216 0.101 0.827 0.861 sum 21.560 -7.630 1.584 22.925 Atomic orbital electron populations 1.69609 1.08369 1.30962 1.32298 1.26330 0.94765 1.02267 0.90437 0.86264 0.81481 0.79050 0.79338 1.19158 1.21562 1.16335 1.19712 0.93229 0.96168 1.36437 0.88693 1.17845 0.92795 0.90436 0.88559 1.20738 0.95726 1.05569 1.05050 1.20415 0.92567 0.94633 0.95297 1.18948 0.92306 1.06019 1.10952 1.18349 0.86062 0.78839 0.79294 1.90624 1.78031 1.40554 1.36147 1.45693 1.08392 1.36139 1.47408 1.20509 0.81517 1.00248 0.91243 0.89184 1.21980 0.96479 1.00376 0.98095 1.21529 0.94858 1.01356 0.97967 1.21557 1.00244 0.99213 0.94558 1.21504 0.92904 1.01788 0.98242 1.21716 0.98317 1.00628 0.93286 0.88130 1.20623 0.79176 0.85468 0.85173 1.43916 1.52412 1.32825 1.13387 1.90881 1.37184 1.25973 1.84655 1.20422 0.95310 0.95587 0.94804 1.20673 0.93144 1.04657 1.05333 0.89920 0.87861 0.87646 0.77391 0.91816 0.90678 0.91606 0.91615 0.91602 0.91484 0.91225 0.91011 0.77454 0.76942 0.88995 0.87869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.37 13.92 55.56 0.77 -19.60 16 2 C 0.08 2.16 5.40 -17.31 -0.09 2.06 16 3 Si 0.91 20.93 24.52 -169.99 -4.17 16.76 16 4 H -0.27 -5.96 6.71 56.52 0.38 -5.58 16 5 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.24 -5.79 6.87 56.52 0.39 -5.41 16 7 C -0.43 -11.30 9.56 -37.75 -0.36 -11.66 16 8 H 0.10 2.57 8.06 -52.49 -0.42 2.15 16 9 C 0.11 2.71 5.11 -106.80 -0.55 2.17 16 10 C -0.25 -6.29 7.11 -39.27 -0.28 -6.57 16 11 C -0.01 -0.24 9.52 -39.61 -0.38 -0.62 16 12 C -0.28 -6.37 5.89 -104.73 -0.62 -6.98 16 13 C 0.58 12.50 7.73 -12.42 -0.10 12.40 16 14 O -0.57 -13.82 15.98 5.30 0.08 -13.73 16 15 N -0.73 -12.09 3.82 -54.81 -0.21 -12.29 16 16 C 0.17 2.33 1.45 -67.93 -0.10 2.23 16 17 H 0.09 1.52 7.53 -51.93 -0.39 1.13 16 18 C -0.13 -1.52 5.49 -26.73 -0.15 -1.66 16 19 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 20 C -0.12 -0.76 5.92 -26.73 -0.16 -0.92 16 21 C -0.11 -0.73 5.10 -26.70 -0.14 -0.87 16 22 C -0.12 -1.12 2.11 -91.75 -0.19 -1.31 16 23 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 24 C 0.51 5.98 7.26 -10.98 -0.08 5.90 16 25 N -0.86 -6.15 8.77 31.22 0.27 -5.88 16 26 O -0.51 -9.05 16.04 5.56 0.09 -8.96 16 27 C -0.04 -0.89 9.47 -39.61 -0.38 -1.27 16 28 C -0.22 -5.02 9.73 -39.27 -0.38 -5.40 16 29 H 0.29 6.74 8.29 -40.82 -0.34 6.40 16 30 H 0.10 2.55 4.72 -52.49 -0.25 2.30 16 31 H 0.11 2.49 7.63 -52.49 -0.40 2.09 16 32 H 0.39 5.85 6.60 -40.82 -0.27 5.58 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.31 7.56 -51.93 -0.39 -0.08 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.40 1.47 8.25 -40.82 -0.34 1.13 16 42 H 0.40 2.75 8.93 -40.82 -0.36 2.38 16 43 H 0.09 1.61 6.37 -52.49 -0.33 1.27 16 44 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 353.67 15.07 5.33 5.33 Total: -1.00 -33.25 353.67 -8.06 -41.31 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -6.14 Total: 10.77 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -4.10 Total: -13.70 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.84 Total: -37.77 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: 0.17 Total: -22.70 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.17 Total: 16.76 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.25 -8.06 -41.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270302632.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.136 kcal (2) G-P(sol) polarization free energy of solvation -33.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds