Wall clock time and date at job start Tue Mar 31 2020 11:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30650 * 1 3 3 Si 1.86804 * 119.99900 * 2 1 4 4 H 1.48498 * 109.47197 * 275.41305 * 3 2 1 5 5 H 1.48508 * 109.47141 * 35.41408 * 3 2 1 6 6 H 1.48501 * 109.47051 * 155.40837 * 3 2 1 7 7 C 1.40221 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00161 * 341.74645 * 7 2 1 9 9 C 1.41118 * 119.99881 * 161.74532 * 7 2 1 10 10 C 1.40888 * 120.10513 * 330.15503 * 9 7 2 11 11 C 1.36310 * 119.89420 * 179.97438 * 10 9 7 12 12 C 1.40014 * 120.10345 * 0.02562 * 11 10 9 13 13 C 1.47646 * 119.89233 * 179.97438 * 12 11 10 14 14 O 1.21579 * 120.00086 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99622 * 179.72495 * 13 12 11 16 16 C 1.46498 * 119.99805 * 180.27838 * 15 13 12 17 17 H 1.08998 * 109.47168 * 35.00149 * 16 15 13 18 18 C 1.53001 * 109.47181 * 274.99959 * 16 15 13 19 19 C 1.52997 * 109.47492 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.47066 * 60.00024 * 19 18 16 21 21 C 1.53000 * 109.47295 * 300.00170 * 20 19 18 22 22 C 1.52998 * 109.47309 * 155.00025 * 16 15 13 23 23 H 1.08998 * 109.46904 * 59.99963 * 22 16 15 24 24 C 1.50698 * 109.47007 * 300.00193 * 22 16 15 25 25 N 1.34784 * 119.99955 * 180.02562 * 24 22 16 26 26 O 1.21279 * 120.00436 * 359.97438 * 24 22 16 27 27 C 1.40011 * 120.21387 * 0.24895 * 12 11 10 28 28 C 1.36318 * 120.10393 * 359.44923 * 27 12 11 29 29 H 0.96997 * 119.99963 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.04945 * 359.95816 * 10 9 7 31 31 H 1.08001 * 119.94988 * 180.02562 * 11 10 9 32 32 H 0.96999 * 120.00041 * 0.27532 * 15 13 12 33 33 H 1.08998 * 109.47224 * 300.00155 * 18 16 15 34 34 H 1.09007 * 109.47206 * 60.00015 * 18 16 15 35 35 H 1.09003 * 109.47451 * 179.97438 * 19 18 16 36 36 H 1.08998 * 109.47100 * 300.00338 * 19 18 16 37 37 H 1.08994 * 109.47171 * 59.99756 * 20 19 18 38 38 H 1.08995 * 109.47597 * 180.02562 * 20 19 18 39 39 H 1.08998 * 109.47741 * 179.97438 * 21 20 19 40 40 H 1.09000 * 109.47157 * 300.00415 * 21 20 19 41 41 H 0.97005 * 119.99704 * 359.97438 * 25 24 22 42 42 H 0.96997 * 119.99867 * 179.97438 * 25 24 22 43 43 H 1.07996 * 119.94924 * 179.72145 * 27 12 11 44 44 H 1.07995 * 120.05763 * 180.29383 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 2.3736 2.1125 -1.3938 5 1 1.4998 2.6170 0.8114 6 1 3.5905 1.4099 0.5826 7 6 2.0076 -1.2143 -0.0005 8 1 1.5084 -2.1262 0.2920 9 6 3.3655 -1.2449 -0.3834 10 6 3.8579 -0.3110 -1.3163 11 6 5.1705 -0.3440 -1.6826 12 6 6.0288 -1.3045 -1.1338 13 6 7.4495 -1.3364 -1.5343 14 8 7.8725 -0.5293 -2.3391 15 7 8.2788 -2.2565 -1.0031 16 6 9.6899 -2.2844 -1.3959 17 1 10.0395 -1.2663 -1.5671 18 6 9.8455 -3.1000 -2.6810 19 6 11.3191 -3.1286 -3.0917 20 6 12.1469 -3.7708 -1.9767 21 6 11.9913 -2.9552 -0.6916 22 6 10.5172 -2.9269 -0.2808 23 1 10.1675 -3.9450 -0.1095 24 6 10.3638 -2.1236 0.9850 25 7 11.0071 -2.5040 2.1067 26 8 9.6624 -1.1343 0.9942 27 6 5.5429 -2.2383 -0.2106 28 6 4.2332 -2.2092 0.1665 29 1 -0.4850 0.8400 0.0004 30 1 3.1964 0.4298 -1.7406 31 1 5.5490 0.3717 -2.3974 32 1 7.9414 -2.9003 -0.3607 33 1 9.4959 -4.1181 -2.5098 34 1 9.2562 -2.6423 -3.4756 35 1 11.4300 -3.7101 -4.0069 36 1 11.6683 -2.1104 -3.2630 37 1 11.7976 -4.7890 -1.8052 38 1 13.1967 -3.7908 -2.2689 39 1 12.5806 -3.4129 0.1030 40 1 12.3405 -1.9370 -0.8629 41 1 11.5685 -3.2951 2.0992 42 1 10.9087 -1.9867 2.9213 43 1 6.2076 -2.9801 0.2066 44 1 3.8603 -2.9269 0.8821 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270302632.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:00 Heat of formation + Delta-G solvation = -106.125497 kcal Electronic energy + Delta-G solvation = -26402.428676 eV Core-core repulsion = 22702.792576 eV Total energy + Delta-G solvation = -3699.636099 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.62216 -40.42636 -39.14825 -38.29400 -35.69667 -35.25589 -34.52558 -32.64602 -31.83547 -31.73205 -30.30519 -27.55390 -24.83624 -24.14149 -23.53859 -22.54385 -21.50644 -21.40199 -20.71882 -19.49449 -18.95413 -18.21448 -17.57659 -17.24214 -17.12956 -16.08109 -15.86740 -15.73950 -15.67877 -15.42414 -15.22390 -14.87676 -14.67505 -14.57396 -14.28119 -14.20121 -13.95442 -13.69613 -13.48152 -13.32041 -12.80979 -12.66125 -12.35869 -12.27980 -12.16052 -12.02524 -11.87795 -11.57029 -11.51373 -11.28515 -11.13055 -10.83656 -10.65692 -10.58232 -9.95227 -9.72843 -9.52689 -9.07652 -6.63746 0.26329 0.86175 1.21348 1.31749 1.41907 1.68702 1.99351 2.06492 2.37434 2.59616 2.69844 3.45531 3.49822 3.80090 3.92153 4.11738 4.12465 4.18500 4.25254 4.27229 4.33539 4.39519 4.47172 4.51639 4.60531 4.84319 4.87172 4.90999 4.95654 5.08135 5.14214 5.17112 5.20322 5.28158 5.37235 5.45612 5.52103 5.62294 5.65639 5.74723 5.83512 5.94873 6.07061 6.24157 6.52187 6.57239 6.67755 6.74987 7.43444 7.47158 7.98125 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.022622 B = 0.003201 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.437132 B = 8744.378967 C = 9155.848826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.059 3.941 3 Si 0.955 3.045 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.262 1.262 7 C -0.460 4.460 8 H 0.076 0.924 9 C 0.093 3.907 10 C -0.262 4.262 11 C -0.027 4.027 12 C -0.280 4.280 13 C 0.575 3.425 14 O -0.607 6.607 15 N -0.706 5.706 16 C 0.165 3.835 17 H 0.049 0.951 18 C -0.125 4.125 19 C -0.118 4.118 20 C -0.111 4.111 21 C -0.102 4.102 22 C -0.108 4.108 23 H 0.136 0.864 24 C 0.508 3.492 25 N -0.835 5.835 26 O -0.585 6.585 27 C -0.031 4.031 28 C -0.224 4.224 29 H 0.301 0.699 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.403 0.597 33 H 0.085 0.915 34 H 0.037 0.963 35 H 0.078 0.922 36 H 0.049 0.951 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.054 0.946 41 H 0.419 0.581 42 H 0.404 0.596 43 H 0.137 0.863 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.187 -11.582 2.566 27.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.160 4.160 3 Si 0.779 3.221 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.186 1.186 7 C -0.487 4.487 8 H 0.094 0.906 9 C 0.090 3.910 10 C -0.281 4.281 11 C -0.046 4.046 12 C -0.284 4.284 13 C 0.367 3.633 14 O -0.491 6.491 15 N -0.356 5.356 16 C 0.060 3.940 17 H 0.067 0.933 18 C -0.163 4.163 19 C -0.156 4.156 20 C -0.148 4.148 21 C -0.141 4.141 22 C -0.129 4.129 23 H 0.154 0.846 24 C 0.293 3.707 25 N -0.400 5.400 26 O -0.464 6.464 27 C -0.050 4.050 28 C -0.243 4.243 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.239 0.761 33 H 0.103 0.897 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.126 0.874 40 H 0.073 0.927 41 H 0.251 0.749 42 H 0.235 0.765 43 H 0.154 0.846 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 24.726 -10.369 1.870 26.877 hybrid contribution -0.580 0.803 0.483 1.102 sum 24.146 -9.566 2.353 26.078 Atomic orbital electron populations 1.69601 1.08965 1.32176 1.33582 1.26772 0.95238 1.03886 0.90115 0.85629 0.79606 0.77265 0.79580 1.18719 1.19367 1.18572 1.19697 0.94072 0.96065 1.38893 0.90565 1.18037 0.92894 0.91308 0.88748 1.20787 0.96015 1.05881 1.05403 1.20556 0.92756 0.95472 0.95856 1.19358 0.93178 1.05478 1.10394 1.18265 0.86110 0.79522 0.79354 1.90605 1.78528 1.42163 1.37794 1.45556 1.09334 1.34507 1.46169 1.20711 0.79949 0.99143 0.94178 0.93286 1.21914 0.98308 1.00458 0.95668 1.21542 0.93025 1.01192 0.99842 1.21551 1.00871 0.99620 0.92803 1.21571 0.91010 1.01550 0.99928 1.21722 0.99457 1.01180 0.90572 0.84634 1.21013 0.78428 0.84641 0.86583 1.43706 1.50985 1.33039 1.12232 1.90868 1.40642 1.29050 1.85793 1.20754 0.95258 0.95523 0.93457 1.20961 0.93560 1.04354 1.05410 0.88820 0.88172 0.87866 0.76087 0.89674 0.94435 0.90295 0.93210 0.89497 0.89532 0.87414 0.92714 0.74937 0.76491 0.84568 0.85952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.06 13.92 21.87 0.30 -42.75 16 2 C 0.06 3.10 5.40 85.35 0.46 3.56 16 3 Si 0.96 43.74 24.52 68.60 1.68 45.42 16 4 H -0.26 -11.67 6.71 99.48 0.67 -11.01 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.26 -12.78 6.87 99.48 0.68 -12.09 16 7 C -0.46 -24.94 9.56 23.46 0.22 -24.72 16 8 H 0.08 4.29 8.06 -2.91 -0.02 4.27 16 9 C 0.09 4.80 5.11 -21.27 -0.11 4.69 16 10 C -0.26 -13.36 7.11 22.47 0.16 -13.20 16 11 C -0.03 -1.35 9.52 22.25 0.21 -1.13 16 12 C -0.28 -12.78 5.89 -19.93 -0.12 -12.90 16 13 C 0.58 24.91 7.73 86.73 0.67 25.58 16 14 O -0.61 -30.32 15.98 -3.96 -0.06 -30.38 16 15 N -0.71 -22.72 3.82 -445.60 -1.70 -24.42 16 16 C 0.17 4.33 1.45 44.99 0.07 4.40 16 17 H 0.05 1.71 7.53 -2.39 -0.02 1.69 16 18 C -0.12 -2.72 5.49 30.59 0.17 -2.55 16 19 C -0.12 -1.79 5.92 30.59 0.18 -1.61 16 20 C -0.11 -0.91 5.92 30.59 0.18 -0.73 16 21 C -0.10 -0.99 5.10 30.61 0.16 -0.83 16 22 C -0.11 -1.68 2.11 -11.52 -0.02 -1.71 16 23 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 24 C 0.51 10.65 7.26 87.66 0.64 11.29 16 25 N -0.84 -8.95 8.77 -173.53 -1.52 -10.47 16 26 O -0.58 -20.37 16.04 -3.03 -0.05 -20.41 16 27 C -0.03 -1.27 9.47 22.25 0.21 -1.06 16 28 C -0.22 -10.09 9.73 22.47 0.22 -9.87 16 29 H 0.30 14.13 8.29 -92.71 -0.77 13.36 16 30 H 0.10 5.08 4.72 -2.91 -0.01 5.06 16 31 H 0.10 5.06 7.63 -2.91 -0.02 5.04 16 32 H 0.40 10.92 6.60 -92.71 -0.61 10.31 16 33 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.11 0.29 7.56 -2.39 -0.02 0.27 16 40 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.42 0.96 8.25 -92.70 -0.76 0.20 16 42 H 0.40 4.37 8.93 -92.71 -0.83 3.54 16 43 H 0.14 4.26 6.37 -2.91 -0.02 4.24 16 44 H 0.12 4.99 8.06 -2.91 -0.02 4.97 16 Total: -1.00 -77.96 353.67 0.74 -77.23 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: -1.21 Total: 26.58 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 3.29 Total: -20.80 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -2.92 Total: -77.64 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: -0.11 Total: -50.79 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.68 Total: 45.42 kcal Total: -77.96 0.74 -77.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270302632.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.899 kcal (2) G-P(sol) polarization free energy of solvation -77.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds