Wall clock time and date at job start Tue Mar 31 2020 11:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30648 * 1 3 3 Si 1.86798 * 119.99716 * 2 1 4 4 H 1.48500 * 109.46856 * 269.99381 * 3 2 1 5 5 H 1.48502 * 109.47355 * 29.99461 * 3 2 1 6 6 H 1.48506 * 109.47102 * 149.99646 * 3 2 1 7 7 C 1.40222 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99838 * 197.86537 * 7 2 1 9 9 C 1.41110 * 120.00199 * 17.87152 * 7 2 1 10 10 C 1.40885 * 120.10142 * 204.62935 * 9 7 2 11 11 C 1.36318 * 119.88995 * 180.02562 * 10 9 7 12 12 C 1.40010 * 120.11017 * 359.97438 * 11 10 9 13 13 C 1.47642 * 119.89955 * 179.97438 * 12 11 10 14 14 O 1.21584 * 119.99820 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00238 * 180.02562 * 13 12 11 16 16 N 1.40091 * 120.00150 * 180.02562 * 15 13 12 17 17 C 1.34775 * 120.00150 * 180.02562 * 16 15 13 18 18 O 1.21280 * 120.00295 * 0.02562 * 17 16 15 19 19 C 1.50698 * 120.00225 * 180.02562 * 17 16 15 20 20 C 1.53002 * 109.47417 * 180.02562 * 19 17 16 21 21 C 1.54267 * 110.02872 * 292.90706 * 20 19 17 22 22 C 1.54967 * 104.16132 * 217.13635 * 21 20 19 23 23 C 1.54891 * 102.77618 * 37.88497 * 22 21 20 24 24 C 1.53869 * 110.03415 * 175.69190 * 20 19 17 25 25 C 1.40013 * 120.20763 * 0.25255 * 12 11 10 26 26 C 1.36323 * 120.10461 * 359.48913 * 25 12 11 27 27 H 0.96999 * 120.00250 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.05657 * 359.97438 * 10 9 7 29 29 H 1.08004 * 119.94631 * 179.97438 * 11 10 9 30 30 H 0.96999 * 119.99412 * 359.72139 * 15 13 12 31 31 H 0.97008 * 120.00204 * 359.97438 * 16 15 13 32 32 H 1.09007 * 109.47296 * 299.99660 * 19 17 16 33 33 H 1.09000 * 109.47397 * 59.99517 * 19 17 16 34 34 H 1.08996 * 110.01940 * 54.29369 * 20 19 17 35 35 H 1.09005 * 110.48672 * 335.78219 * 21 20 19 36 36 H 1.08993 * 110.48980 * 98.42527 * 21 20 19 37 37 H 1.09000 * 110.71931 * 279.57925 * 22 21 20 38 38 H 1.08999 * 110.92660 * 156.29437 * 22 21 20 39 39 H 1.09001 * 110.49043 * 203.40571 * 23 22 21 40 40 H 1.09003 * 110.59794 * 80.81699 * 23 22 21 41 41 H 1.09004 * 110.03267 * 238.56876 * 24 20 19 42 42 H 1.09008 * 110.03372 * 359.97438 * 24 20 19 43 43 H 1.07999 * 119.95179 * 179.74175 * 25 12 11 44 44 H 1.07999 * 120.05569 * 180.22928 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.4880 2.0463 -1.4001 5 1 1.4378 2.6527 0.6999 6 1 3.5380 1.4403 0.7001 7 6 2.0076 -1.2144 0.0005 8 1 3.0485 -1.2368 0.2875 9 6 1.3531 -2.4071 -0.3739 10 6 1.8267 -3.6493 0.0923 11 6 1.1915 -4.7989 -0.2726 12 6 0.0698 -4.7466 -1.1088 13 6 -0.6143 -5.9946 -1.5016 14 8 -0.2037 -7.0657 -1.0985 15 7 -1.6940 -5.9466 -2.3069 16 7 -2.3434 -7.1308 -2.6791 17 6 -3.4227 -7.0829 -3.4848 18 8 -3.8315 -6.0146 -3.8880 19 6 -4.1217 -8.3566 -3.8847 20 6 -5.3055 -8.0246 -4.7954 21 6 -6.3851 -7.2607 -4.0011 22 6 -7.7237 -7.7993 -4.5663 23 6 -7.4206 -9.3014 -4.7921 24 6 -5.9635 -9.3213 -5.2984 25 6 -0.4018 -3.5148 -1.5785 26 6 0.2237 -2.3594 -1.2148 27 1 -0.4850 0.8400 -0.0004 28 1 2.6922 -3.6908 0.7371 29 1 1.5541 -5.7518 0.0840 30 1 -2.0239 -5.0918 -2.6251 31 1 -2.0158 -7.9854 -2.3575 32 1 -3.4236 -9.0022 -4.4179 33 1 -4.4816 -8.8692 -2.9926 34 1 -4.9692 -7.4242 -5.6406 35 1 -6.3039 -7.4821 -2.9368 36 1 -6.3002 -6.1883 -4.1761 37 1 -7.9697 -7.3091 -5.5082 38 1 -8.5303 -7.6723 -3.8442 39 1 -8.0915 -9.7172 -5.5438 40 1 -7.5070 -9.8548 -3.8570 41 1 -5.9472 -9.3500 -6.3880 42 1 -5.4392 -10.1873 -4.8942 43 1 -1.2649 -3.4795 -2.2268 44 1 -0.1430 -1.4094 -1.5746 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270508931.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:04 Heat of formation + Delta-G solvation = -49.800066 kcal Electronic energy + Delta-G solvation = -25010.783330 eV Core-core repulsion = 21313.589685 eV Total energy + Delta-G solvation = -3697.193645 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.25734 -39.04251 -37.90179 -37.12834 -34.90676 -33.96188 -32.25730 -31.07951 -29.65367 -29.47588 -28.85944 -26.35429 -25.47722 -22.29076 -21.39750 -20.94798 -20.86879 -20.16048 -19.55130 -17.69766 -17.54945 -17.31960 -16.21980 -15.73819 -15.56260 -15.38864 -15.09470 -14.35954 -14.20673 -14.06422 -13.80884 -13.53893 -13.33674 -13.28212 -12.86075 -12.35310 -12.18070 -12.03817 -11.49997 -11.47274 -11.34078 -11.31326 -11.19993 -11.08114 -10.99692 -10.90767 -10.81011 -10.69896 -10.62666 -10.13338 -10.01378 -9.63399 -9.42639 -9.24131 -8.08692 -7.78908 -7.60606 -7.10177 -4.67646 2.07570 2.18447 2.56589 2.88477 2.92990 2.95331 2.97695 3.69049 3.74455 4.17144 4.35333 4.42612 4.47615 4.56177 4.88841 4.95595 5.03867 5.24425 5.29890 5.41834 5.45236 5.49143 5.55399 5.60618 5.68658 5.76915 5.81570 5.90355 5.98847 6.08354 6.15751 6.23192 6.28895 6.70690 6.75530 6.88022 6.99569 7.04056 7.08234 7.36558 7.58670 7.69598 7.78955 7.99122 8.05243 8.16987 8.32751 8.55603 8.67281 8.92824 9.81430 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.022667 B = 0.002276 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.976436 B =12300.314304 C =13316.577716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.073 3.927 3 Si 0.916 3.084 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.437 4.437 8 H 0.087 0.913 9 C 0.129 3.871 10 C -0.238 4.238 11 C -0.016 4.016 12 C -0.281 4.281 13 C 0.574 3.426 14 O -0.578 6.578 15 N -0.537 5.537 16 N -0.522 5.522 17 C 0.506 3.494 18 O -0.542 6.542 19 C -0.124 4.124 20 C -0.076 4.076 21 C -0.115 4.115 22 C -0.128 4.128 23 C -0.125 4.125 24 C -0.122 4.122 25 C -0.062 4.062 26 C -0.176 4.176 27 H 0.288 0.712 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.429 0.571 31 H 0.427 0.573 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.090 0.910 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.773 -11.427 -7.836 17.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.149 4.149 3 Si 0.739 3.261 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.464 4.464 8 H 0.105 0.895 9 C 0.125 3.875 10 C -0.257 4.257 11 C -0.036 4.036 12 C -0.287 4.287 13 C 0.370 3.630 14 O -0.459 6.459 15 N -0.287 5.287 16 N -0.268 5.268 17 C 0.292 3.708 18 O -0.418 6.418 19 C -0.166 4.166 20 C -0.095 4.095 21 C -0.153 4.153 22 C -0.165 4.165 23 C -0.163 4.163 24 C -0.159 4.159 25 C -0.081 4.081 26 C -0.195 4.195 27 H 0.100 0.900 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.272 0.728 31 H 0.268 0.732 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.992 -11.254 -7.825 17.570 hybrid contribution 0.298 0.745 0.094 0.808 sum -10.694 -10.509 -7.731 16.869 Atomic orbital electron populations 1.69738 1.07962 1.30311 1.30908 1.26145 0.94853 1.02057 0.91892 0.86170 0.80549 0.79633 0.79736 1.18843 1.19944 1.18211 1.19906 0.98486 0.91138 1.36849 0.89501 1.17819 0.90327 0.92259 0.87056 1.20704 1.04652 0.92502 1.07885 1.20317 0.92563 0.97310 0.93397 1.18573 1.04823 0.89856 1.15490 1.18842 0.77489 0.90562 0.76077 1.90641 1.66541 1.31393 1.57310 1.45166 1.29767 1.00927 1.52868 1.44889 1.28591 1.03066 1.50209 1.20943 0.79251 0.92419 0.78181 1.90715 1.64985 1.31128 1.54930 1.21792 0.98208 0.94760 1.01795 1.21544 0.93669 0.96361 0.97900 1.22426 0.93135 1.00740 0.98980 1.22539 0.97615 0.95453 1.00900 1.22360 0.96158 0.96864 1.00883 1.22234 0.95784 0.97205 1.00711 1.20502 0.97384 0.92590 0.97634 1.20986 0.99803 0.96942 1.01793 0.90027 0.88148 0.87907 0.72787 0.73164 0.88541 0.88468 0.90017 0.91987 0.90609 0.91617 0.91774 0.91925 0.91717 0.91634 0.91566 0.89189 0.86021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.15 10.95 55.56 0.61 -17.54 16 2 C 0.07 1.66 5.14 -17.31 -0.09 1.58 16 3 Si 0.92 16.99 29.60 -169.99 -5.03 11.96 16 4 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 5 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 6 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 7 C -0.44 -10.62 9.04 -37.75 -0.34 -10.96 16 8 H 0.09 2.01 7.91 -52.48 -0.42 1.59 16 9 C 0.13 3.22 5.58 -106.80 -0.60 2.62 16 10 C -0.24 -5.60 9.73 -39.27 -0.38 -5.98 16 11 C -0.02 -0.38 9.52 -39.61 -0.38 -0.75 16 12 C -0.28 -6.33 5.89 -104.73 -0.62 -6.95 16 13 C 0.57 12.03 7.88 -12.42 -0.10 11.93 16 14 O -0.58 -12.98 16.16 5.29 0.09 -12.89 16 15 N -0.54 -9.64 6.21 30.48 0.19 -9.46 16 16 N -0.52 -7.66 6.26 31.22 0.20 -7.47 16 17 C 0.51 6.76 7.73 -10.99 -0.08 6.67 16 18 O -0.54 -8.98 14.62 5.56 0.08 -8.90 16 19 C -0.12 -1.10 4.83 -27.88 -0.13 -1.23 16 20 C -0.08 -0.69 2.55 -89.50 -0.23 -0.92 16 21 C -0.12 -1.15 5.40 -25.03 -0.14 -1.29 16 22 C -0.13 -1.03 6.91 -24.69 -0.17 -1.20 16 23 C -0.13 -0.87 6.83 -25.07 -0.17 -1.04 16 24 C -0.12 -0.86 6.46 -25.62 -0.17 -1.02 16 25 C -0.06 -1.38 9.47 -39.61 -0.38 -1.75 16 26 C -0.18 -4.28 8.64 -39.27 -0.34 -4.62 16 27 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16 28 H 0.10 2.19 8.06 -52.48 -0.42 1.77 16 29 H 0.10 2.24 7.63 -52.48 -0.40 1.84 16 30 H 0.43 7.63 6.00 -182.60 -1.10 6.53 16 31 H 0.43 5.59 8.00 -182.60 -1.46 4.13 16 32 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.70 8.02 -51.93 -0.42 0.28 16 34 H 0.08 0.86 7.95 -51.93 -0.41 0.45 16 35 H 0.06 0.63 7.77 -51.93 -0.40 0.22 16 36 H 0.08 0.91 7.62 -51.93 -0.40 0.52 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.40 7.67 -51.92 -0.40 0.00 16 43 H 0.09 1.77 6.37 -52.49 -0.33 1.43 16 44 H 0.12 3.01 6.15 -52.49 -0.32 2.68 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -28.65 363.02 -10.86 -39.51 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: -8.15 Total: 14.24 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -4.30 Total: -14.92 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.99 Total: -34.46 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: 0.17 Total: -21.80 kcal Atomic # 14 Polarization: 16.99 SS G_CDS: -5.03 Total: 11.96 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.65 -10.86 -39.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270508931.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.294 kcal (2) G-P(sol) polarization free energy of solvation -28.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds