Wall clock time and date at job start Tue Mar 31 2020 11:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30648 * 1 3 3 Si 1.86798 * 119.99716 * 2 1 4 4 H 1.48500 * 109.46856 * 269.99381 * 3 2 1 5 5 H 1.48502 * 109.47355 * 29.99461 * 3 2 1 6 6 H 1.48506 * 109.47102 * 149.99646 * 3 2 1 7 7 C 1.40222 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99838 * 197.86537 * 7 2 1 9 9 C 1.41110 * 120.00199 * 17.87152 * 7 2 1 10 10 C 1.40885 * 120.10142 * 204.62935 * 9 7 2 11 11 C 1.36318 * 119.88995 * 180.02562 * 10 9 7 12 12 C 1.40010 * 120.11017 * 359.97438 * 11 10 9 13 13 C 1.47642 * 119.89955 * 179.97438 * 12 11 10 14 14 O 1.21584 * 119.99820 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00238 * 180.02562 * 13 12 11 16 16 N 1.40091 * 120.00150 * 180.02562 * 15 13 12 17 17 C 1.34775 * 120.00150 * 180.02562 * 16 15 13 18 18 O 1.21280 * 120.00295 * 0.02562 * 17 16 15 19 19 C 1.50698 * 120.00225 * 180.02562 * 17 16 15 20 20 C 1.53002 * 109.47417 * 180.02562 * 19 17 16 21 21 C 1.54267 * 110.02872 * 292.90706 * 20 19 17 22 22 C 1.54967 * 104.16132 * 217.13635 * 21 20 19 23 23 C 1.54891 * 102.77618 * 37.88497 * 22 21 20 24 24 C 1.53869 * 110.03415 * 175.69190 * 20 19 17 25 25 C 1.40013 * 120.20763 * 0.25255 * 12 11 10 26 26 C 1.36323 * 120.10461 * 359.48913 * 25 12 11 27 27 H 0.96999 * 120.00250 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.05657 * 359.97438 * 10 9 7 29 29 H 1.08004 * 119.94631 * 179.97438 * 11 10 9 30 30 H 0.96999 * 119.99412 * 359.72139 * 15 13 12 31 31 H 0.97008 * 120.00204 * 359.97438 * 16 15 13 32 32 H 1.09007 * 109.47296 * 299.99660 * 19 17 16 33 33 H 1.09000 * 109.47397 * 59.99517 * 19 17 16 34 34 H 1.08996 * 110.01940 * 54.29369 * 20 19 17 35 35 H 1.09005 * 110.48672 * 335.78219 * 21 20 19 36 36 H 1.08993 * 110.48980 * 98.42527 * 21 20 19 37 37 H 1.09000 * 110.71931 * 279.57925 * 22 21 20 38 38 H 1.08999 * 110.92660 * 156.29437 * 22 21 20 39 39 H 1.09001 * 110.49043 * 203.40571 * 23 22 21 40 40 H 1.09003 * 110.59794 * 80.81699 * 23 22 21 41 41 H 1.09004 * 110.03267 * 238.56876 * 24 20 19 42 42 H 1.09008 * 110.03372 * 359.97438 * 24 20 19 43 43 H 1.07999 * 119.95179 * 179.74175 * 25 12 11 44 44 H 1.07999 * 120.05569 * 180.22928 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.4880 2.0463 -1.4001 5 1 1.4378 2.6527 0.6999 6 1 3.5380 1.4403 0.7001 7 6 2.0076 -1.2144 0.0005 8 1 3.0485 -1.2368 0.2875 9 6 1.3531 -2.4071 -0.3739 10 6 1.8267 -3.6493 0.0923 11 6 1.1915 -4.7989 -0.2726 12 6 0.0698 -4.7466 -1.1088 13 6 -0.6143 -5.9946 -1.5016 14 8 -0.2037 -7.0657 -1.0985 15 7 -1.6940 -5.9466 -2.3069 16 7 -2.3434 -7.1308 -2.6791 17 6 -3.4227 -7.0829 -3.4848 18 8 -3.8315 -6.0146 -3.8880 19 6 -4.1217 -8.3566 -3.8847 20 6 -5.3055 -8.0246 -4.7954 21 6 -6.3851 -7.2607 -4.0011 22 6 -7.7237 -7.7993 -4.5663 23 6 -7.4206 -9.3014 -4.7921 24 6 -5.9635 -9.3213 -5.2984 25 6 -0.4018 -3.5148 -1.5785 26 6 0.2237 -2.3594 -1.2148 27 1 -0.4850 0.8400 -0.0004 28 1 2.6922 -3.6908 0.7371 29 1 1.5541 -5.7518 0.0840 30 1 -2.0239 -5.0918 -2.6251 31 1 -2.0158 -7.9854 -2.3575 32 1 -3.4236 -9.0022 -4.4179 33 1 -4.4816 -8.8692 -2.9926 34 1 -4.9692 -7.4242 -5.6406 35 1 -6.3039 -7.4821 -2.9368 36 1 -6.3002 -6.1883 -4.1761 37 1 -7.9697 -7.3091 -5.5082 38 1 -8.5303 -7.6723 -3.8442 39 1 -8.0915 -9.7172 -5.5438 40 1 -7.5070 -9.8548 -3.8570 41 1 -5.9472 -9.3500 -6.3880 42 1 -5.4392 -10.1873 -4.8942 43 1 -1.2649 -3.4795 -2.2268 44 1 -0.1430 -1.4094 -1.5746 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270508931.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:04 Heat of formation + Delta-G solvation = -65.362266 kcal Electronic energy + Delta-G solvation = -25011.458158 eV Core-core repulsion = 21313.589685 eV Total energy + Delta-G solvation = -3697.868473 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.51042 -40.45364 -39.07342 -38.57476 -36.31418 -35.72792 -33.41133 -32.36633 -31.37379 -31.05802 -29.50012 -27.84005 -26.57507 -23.95088 -22.94205 -22.40081 -21.72832 -21.42013 -20.36910 -19.41001 -18.95971 -18.69863 -17.47803 -17.18027 -16.78216 -16.49429 -15.95521 -15.82734 -15.74596 -15.58692 -15.09391 -14.89607 -14.53707 -14.24068 -14.13831 -13.96012 -13.75495 -13.30501 -13.06441 -12.89356 -12.70282 -12.43728 -12.33172 -12.13017 -11.91087 -11.83088 -11.79620 -11.68642 -11.51048 -11.41923 -11.29980 -11.21492 -11.14079 -10.85688 -9.68237 -9.57615 -9.29231 -8.83051 -6.52123 0.33115 0.89311 1.12128 1.35356 1.40181 1.50412 1.53285 2.05045 2.15214 2.72286 3.07668 3.57845 3.64481 3.72600 3.80910 3.92090 4.17429 4.24307 4.34666 4.41316 4.41751 4.60304 4.63165 4.73818 4.85730 4.90131 4.91356 4.97942 4.98953 5.10207 5.13584 5.14476 5.23907 5.29212 5.39398 5.51550 5.53179 5.56486 5.64491 5.66339 5.82516 5.95679 5.99064 6.17851 6.50011 6.57006 6.72935 6.83820 6.91958 7.41261 8.11694 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.022667 B = 0.002276 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.976436 B =12300.314304 C =13316.577716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.035 3.965 3 Si 0.990 3.010 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.254 1.254 7 C -0.465 4.465 8 H 0.090 0.910 9 C 0.102 3.898 10 C -0.249 4.249 11 C -0.024 4.024 12 C -0.290 4.290 13 C 0.578 3.422 14 O -0.593 6.593 15 N -0.534 5.534 16 N -0.519 5.519 17 C 0.506 3.494 18 O -0.576 6.576 19 C -0.116 4.116 20 C -0.076 4.076 21 C -0.119 4.119 22 C -0.127 4.127 23 C -0.122 4.122 24 C -0.116 4.116 25 C -0.057 4.057 26 C -0.197 4.197 27 H 0.298 0.702 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.429 0.571 31 H 0.436 0.564 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.045 0.955 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.112 0.888 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.372 -12.736 -8.409 19.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.178 1.178 7 C -0.492 4.492 8 H 0.108 0.892 9 C 0.098 3.902 10 C -0.268 4.268 11 C -0.043 4.043 12 C -0.295 4.295 13 C 0.373 3.627 14 O -0.476 6.476 15 N -0.281 5.281 16 N -0.267 5.267 17 C 0.295 3.705 18 O -0.454 6.454 19 C -0.156 4.156 20 C -0.095 4.095 21 C -0.157 4.157 22 C -0.165 4.165 23 C -0.160 4.160 24 C -0.153 4.153 25 C -0.076 4.076 26 C -0.217 4.217 27 H 0.109 0.891 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.273 0.727 31 H 0.279 0.721 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.130 0.870 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.615 -12.591 -8.410 19.084 hybrid contribution 0.372 1.089 0.231 1.174 sum -11.243 -11.502 -8.179 18.044 Atomic orbital electron populations 1.69768 1.09369 1.31785 1.30987 1.26998 0.95542 1.05076 0.90814 0.85074 0.79160 0.75036 0.79818 1.18431 1.19025 1.17774 1.20181 0.98901 0.92029 1.38064 0.89155 1.18167 0.91042 0.93205 0.87751 1.20871 1.05233 0.92427 1.08281 1.20492 0.92802 0.97492 0.93516 1.18822 1.04831 0.90781 1.15113 1.18477 0.78121 0.89637 0.76502 1.90624 1.67249 1.31619 1.58134 1.44904 1.29029 1.02521 1.51651 1.45171 1.28831 1.02008 1.50730 1.21942 0.78257 0.93600 0.76731 1.90713 1.65713 1.32965 1.55984 1.21930 0.98107 0.92529 1.03055 1.21543 0.93582 0.97264 0.97147 1.22410 0.94961 0.99157 0.99155 1.22540 0.96637 0.96585 1.00729 1.22367 0.96315 0.95638 1.01653 1.22209 0.95686 0.96363 1.01088 1.20682 0.97603 0.92003 0.97289 1.20996 1.00622 0.97217 1.02831 0.89105 0.87126 0.86999 0.72745 0.72109 0.85546 0.85919 0.91927 0.92205 0.93654 0.91883 0.91434 0.90835 0.90950 0.91134 0.89642 0.86984 0.86985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.17 10.95 21.87 0.24 -37.93 16 2 C 0.04 1.62 5.14 85.35 0.44 2.06 16 3 Si 0.99 34.50 29.60 68.60 2.03 36.53 16 4 H -0.26 -8.84 7.11 99.48 0.71 -8.14 16 5 H -0.27 -8.82 7.11 99.48 0.71 -8.12 16 6 H -0.25 -8.62 7.11 99.48 0.71 -7.91 16 7 C -0.46 -23.05 9.04 23.46 0.21 -22.84 16 8 H 0.09 4.25 7.91 -2.91 -0.02 4.22 16 9 C 0.10 5.21 5.58 -21.28 -0.12 5.10 16 10 C -0.25 -11.94 9.73 22.47 0.22 -11.72 16 11 C -0.02 -1.09 9.52 22.25 0.21 -0.88 16 12 C -0.29 -13.07 5.89 -19.93 -0.12 -13.19 16 13 C 0.58 23.88 7.88 86.73 0.68 24.57 16 14 O -0.59 -26.13 16.16 -3.98 -0.06 -26.19 16 15 N -0.53 -18.77 6.21 -175.74 -1.09 -19.86 16 16 N -0.52 -14.48 6.26 -173.54 -1.09 -15.56 16 17 C 0.51 12.82 7.73 87.66 0.68 13.50 16 18 O -0.58 -19.03 14.62 -3.03 -0.04 -19.07 16 19 C -0.12 -1.71 4.83 29.85 0.14 -1.57 16 20 C -0.08 -1.26 2.55 -10.07 -0.03 -1.28 16 21 C -0.12 -2.32 5.40 31.70 0.17 -2.15 16 22 C -0.13 -1.91 6.91 31.91 0.22 -1.69 16 23 C -0.12 -1.37 6.83 31.67 0.22 -1.15 16 24 C -0.12 -1.28 6.46 31.32 0.20 -1.08 16 25 C -0.06 -2.55 9.47 22.25 0.21 -2.34 16 26 C -0.20 -9.85 8.64 22.47 0.19 -9.66 16 27 H 0.30 12.73 8.29 -92.71 -0.77 11.96 16 28 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 29 H 0.11 4.89 7.63 -2.91 -0.02 4.86 16 30 H 0.43 15.12 6.00 -213.33 -1.28 13.84 16 31 H 0.44 10.51 8.00 -213.32 -1.71 8.81 16 32 H 0.13 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.12 1.29 8.02 -2.39 -0.02 1.27 16 34 H 0.06 1.28 7.95 -2.39 -0.02 1.26 16 35 H 0.06 1.16 7.77 -2.38 -0.02 1.14 16 36 H 0.04 1.14 7.62 -2.39 -0.02 1.12 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 42 H 0.08 0.65 7.67 -2.38 -0.02 0.63 16 43 H 0.11 4.41 6.37 -2.91 -0.02 4.40 16 44 H 0.11 5.72 6.15 -2.91 -0.02 5.70 16 Total: -1.00 -62.89 363.02 1.57 -61.32 By element: Atomic # 1 Polarization: 47.04 SS G_CDS: -1.95 Total: 45.09 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: 3.54 Total: -24.32 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -1.94 Total: -73.35 kcal Atomic # 8 Polarization: -45.15 SS G_CDS: -0.11 Total: -45.26 kcal Atomic # 14 Polarization: 34.50 SS G_CDS: 2.03 Total: 36.53 kcal Total: -62.89 1.57 -61.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270508931.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.042 kcal (2) G-P(sol) polarization free energy of solvation -62.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds